MD09G1099800.v1.1

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000412
Physical Location & Seq
Forward (+)
7287144 .. 7292272
5129 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1099800.v1.1.491

Sequence Viewer

Length: 2391 bp
ATGATGTTTCTCTTAGGGAGGTTAACAATATCAAATTACGTGGTTGCGTGGTTTGCGAATCGCATGCTGTTTTCCATCTTCGTTTCTTATGCAGTAGCGGTCTTGTTGTGCTCATCTCACCCATTTTGCTGTGCTAGAGATACAGTAACATATGACACTCCAATTACCGACGGTGTTGAATCAGAAACTCTTGTTTCGTCTGGTGGAAGATTTGAACTCGGATTCTTTAGCCCTTCACCTGAAGGGACTCAAAGATATGTTGGCATATGGTATCACCAACTGAGTCCGAGGACAGTGGTATGGGTTGCCAACAGAGAAAAGGCAGTTGACAATTCCACTAGTAATGGAAGTCTTGCACTCCAAGATGGTAACCTCCATGTGTTGGATGCTGCTGGAAAGAGGTACTGGTCAACGGAGGTTGAAACATCCGAGTCTTTGACGCAGACTGTGACGCTCATGGATTCCGGGAACCTTGTTCTAAGCAGTGGCCATGATAAGTTGGCAGTGAATATTCTGTGGCAGAGCTTTCAAAGTCCAACCGATACATTCATTCCTGGGATGGTAATGGATAAAAGCTTGGTGTTGACTTCATGGAGAGGCGAAGATGACCCGGAAAGCGGGCGATTCATCTTCAAAAAAGATCCAGTTCGAGAGGACCACTTTGATCAAATGCTTCCTGCAGTTACTTACTCATTATCAAATTTCAGCAAGAAATATGTTGTTGGAAATTCCAGCAAGGTTTTCAGTTCTCCGAGTCAAAACTCTTCTTATAAAAACCCAGGAATTCCTCCACGATCAGAATACAATTATACAAGGTTGGTGATTAATATTACTGGAGAGATACAGTTTTGGACGTGGATTAATTCCACAAAGCGGTGGAATTTGAATTGGTCGGCGCCAAGAGATGAATGTAGTGTGTTTAATGCTTGCGGCTACTTTGGCAGCTGCAATAGTAATAATAGGCCGCTGCTGTGCAAATGTTTGCCAGGTTTCAAGCCCCAGTATCTACAGCAGTGGAATTCTGGAGACTTTTCAGGTGGATGCAAAAGAGACTCTGCATTATGTGGCAACAACAAGATTGATACCTTCTTGAGCTTGAAGAAGATGAAAGTGGGAAACCCAGATTCAAAAATCAACGTTGAAAAAGAAGAAGAATGCAGGAACGGGTGCTTAAATAGCTGCCAGTGCAAGGCCTATTCATATGCTATATCTGGAGAGTATAGTAATCGAAGGGATGCTTCATTGTGCAAAATATGGAACGAGGGAGATCTAAATAATCTTGAAGAAGAGTATACTGATGGGGGCCAGGACCTCTCTGTTCGTGTTGCGTTTGAAAGGCGAGTCAAGGAGTTGATAGACACAAGCGAGTTCAAGGAAGAGGAAGGTATAGATGTACCTTTTTTTGATATGCAAACTATACTAGACGCTACAGATAATTTCTCAAATGCAAACAAGCTTGGACAAGGGGGATACGGGCCTGTTTACAAGGGAATGTTTATTGGAGGCCAAGAAATCGCGGTGAAAAGGCTATCAAGGGTTTCAGGACAAGGCTTGCAGGAATTTAGGAATGAGGTGGTGCTGATTGCCAAACTTCAACACCGAAACCTTGTTAGACTTAAGGGATGTTGCATGAAGGGAGAAGAAAAGATCTTACTATATGAGTACATGCCTAACAAAAGTTTAGACTTCTTTATATTTGATCATACAAAAAGCATGTTTCTCAACTGGGAGATGCGTTTTAGCATCATTTTAGGAATCGCTCGAGGGCTTCTTTATCTTCATCAAGATTCCAGATTGAGGATCATTCATAGAGATTTGAAAACCAGCAACATTCTTCTAGATGAGGAGATGAACCCCAAAATATCTGACTTCGGTTTAGCGAGGATTGTTGGAGGCAAGGAAACTCAGGCAAACACAAACACTGTAGTTGGAACTTATGGTTACATGGCTCCGGAGTATGCATTGGATGGAACTTTCTCAGTGAAATCAGATGTCTTTAGCTTTGACGTGGTTCGTCTTGAGATAATCAGCGGAAAAAAGAACACAGGCTTTTACCAATCCGAACAAACTTTCAGCCTCATAAATTATGCATGGAGACTCTGGACAGAAAACAAGGTGCTGGATTTAATGGACAAGATTTTGGACGAAAGTTGCAACAAAACCCAGTTTATCCAGTGTGTCAATGTCGGTCTCTTATGCGTACAAGAAGATCCAAACGATCGGCCCGCCATGTCAAACGTTATCACCCTGCTTGACAATGAAACTGCAACCTCTCCATCTCCTAAACAACCAGGGTTTCTCACAAGGGGAGGCAAATACAGCACAGCTTCTTCTTCTAGTAAGCCAGAAGCTATATCTGAAATAACCACCAGTATAGTAGAAGGTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

797

Amino Acids

89.55

Weight (kDa)

5.73

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 98 - 192 2.2e-24 D-mannose binding lectin
S_locus_glycop PF00954 265 - 334 4.1e-20 S-locus glycoprotein domain
PAN_2 PF08276 355 - 421 7e-11 PAN-like domain
Pkinase PF00069 481 - 747 1.1e-42 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 483 - 749 1.6e-45 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230
fragaria_vesca FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44244 FvH4_6g44245 FvH4_6g44245 FvH4_6g44260
malus_domestica MD04G1084700.v1.1 MD09G1099700.v1.1 MD09G1099800.v1.1 MD09G1099900.v1.1 MD09G1100000.v1.1 MD09G1100100.v1.1 MD17G1087900.v1.1
prunus_persica Prupe.3G226000_v2.0.a1 Prupe.3G226200_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226600_v2.0.a1 Prupe.3G226700_v2.0.a1
pyrus_communis pycom02g23070 pycom07g15320 pycom09g02310 pycom09g02330 pycom09g02340 pycom09g02350 pycom09g02360 pycom09g02400 pycom09g02410 pycom09g02430 pycom10g07020 pycom17g08490
rosa_chinensis RchiOBHm_Chr1g0328701 RchiOBHm_Chr2g0161021 RchiOBHm_Chr2g0161031 RchiOBHm_Chr2g0161081 RchiOBHm_Chr2g0161101
rosa_laevigata RLG00000021249 RLG00000021250 RLG00000021251 RLG00000021253 RLG00000021257 RLG00000029922
rosa_multiflora Rmu_sc0000955.1_g000023 Rmu_sc0000955.1_g000025 Rmu_sc0000955.1_g000041 Rmu_sc0002312.1_g000012 Rmu_sc0002481.1_g000021 Rmu_sc0002481.1_g000026 Rmu_sc0002481.1_g000028 Rmu_sc0002481.1_g000039 Rmu_sc0006420.1_g000017
rosa_roxburghii Rroxscaffold_2G00089160 Rroxscaffold_2G00089200 Rroxscaffold_2G00089220 Rroxscaffold_2G00089270 Rroxscaffold_2G00089300 Rroxscaffold_4G00321430
rosa_rugosa Rorug02G0485900 Rorug02G0486100 Rorug03G0345100
rosa_samantha Rh1AG094100 Rh1DG097200 Rh2AG552000 Rh2AG552100 Rh2AG552200 Rh2AG552300 Rh2AG552500 Rh2BG566400 Rh2BG566500 Rh2CG535800 Rh2CG535900 Rh2CG536100 Rh2CG536200 Rh2DG575000 Rh2DG575100 Rh2DG575400 Rh2DG575500 Rh2DG575600 Rh4AG077200 Rh4CG082400
rosa_wichuraiana Rw2G045690 Rw2G045700 Rw2G045710 Rw4G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 771
AccB1I GGYRCC 1 cut(s) 895
AccB7I CCANNNNNTGG 1 cut(s) 382
AccI GTMKAC 1 cut(s) 1292
AccII CGCG 1 cut(s) 1517
AccIII TCCGGA 1 cut(s) 1951
AciI CCGC 8 cut(s) 98, 618, 874, 930, 965, 1517, 2031, 2226
AclI AACGTT 2 cut(s) 1137, 2238
AclWI GGATC 3 cut(s) 635, 1808, 2204
AcoI YGGCCR 1 cut(s) 487
AcsI RAATTY 6 cut(s) 700, 727, 783, 880, 1018, 1559
AcuI CTGAAG 1 cut(s) 261
AcyI GRCGYC 1 cut(s) 896
AfaI GTAC 4 cut(s) 404, 1395, 1664, 2202
AfiI CCNNNNNNNGG 5 cut(s) 382, 617, 873, 1189, 1797
AflII CTTAAG 1 cut(s) 1616
AhlI ACTAGT 1 cut(s) 338
AjiI CACGTC 2 cut(s) 855, 2008
AjnI CCWGG 5 cut(s) 553, 778, 985, 1305, 2290
AluBI AGCT 9 cut(s) 525, 576, 945, 1095, 1179, 1456, 2001, 2327, 2351
AluI AGCT 9 cut(s) 525, 576, 945, 1095, 1179, 1456, 2001, 2327, 2351
Alw21I GWGCWC 1 cut(s) 113
Alw26I GTCTC 4 cut(s) 1020, 1044, 2089, 2195
AlwI GGATC 3 cut(s) 635, 1808, 2204
Ama87I CYCGRG 1 cut(s) 1761
Aor13HI TCCGGA 1 cut(s) 1951
AoxI GGCC 7 cut(s) 487, 962, 1191, 1303, 1475, 1504, 2222
ApeKI GCWGC 5 cut(s) 389, 942, 945, 967, 1179
ApoI RAATTY 6 cut(s) 700, 727, 783, 880, 1018, 1559
AseI ATTAAT 2 cut(s) 825, 861
AspLEI GCGC 1 cut(s) 898
AspS9I GGNCC 5 cut(s) 655, 1303, 1309, 1475, 2223
AsuC2I CCSGG 2 cut(s) 466, 611
AsuHPI GGTGA 6 cut(s) 110, 228, 266, 832, 1531, 2236
AvaI CYCGRG 1 cut(s) 1761
AvaII GGWCC 2 cut(s) 655, 1309
BalI TGGCCA 1 cut(s) 489
BanI GGYRCC 1 cut(s) 895
Bbv12I GWGCWC 1 cut(s) 113
BbvI GCAGC 5 cut(s) 376, 932, 954, 954, 1166
BccI CCATC 6 cut(s) 83, 359, 553, 1292, 1961, 2284
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BciT130I CCWGG 5 cut(s) 555, 780, 987, 1307, 2292
BciVI GTATCC 1 cut(s) 1463
BclI TGATCA 2 cut(s) 664, 1699
BcnI CCSGG 2 cut(s) 466, 611
BcoDI GTCTC 4 cut(s) 1020, 1044, 2089, 2195
BcuI ACTAGT 1 cut(s) 338
BfaI CTAG 5 cut(s) 135, 339, 1421, 1838, 2337
BfmI CTRYAG 4 cut(s) 678, 1007, 1428, 1923
BfoI RGCGCY 1 cut(s) 899
BfrI CTTAAG 1 cut(s) 1616
BfuI GTATCC 1 cut(s) 1463
BglII AGATCT 2 cut(s) 1267, 1647
BisI GCNGC 7 cut(s) 390, 931, 943, 946, 965, 968, 1180
BlsI GCNGC 7 cut(s) 391, 932, 944, 947, 966, 969, 1181
Bme1390I CCNGG 7 cut(s) 466, 555, 611, 780, 987, 1307, 2292
Bme18I GGWCC 2 cut(s) 655, 1309
BmeT110I CYCGRG 1 cut(s) 1761
BmgBI CACGTC 2 cut(s) 855, 2008
BmgT120I GGNCC 5 cut(s) 655, 1303, 1309, 1475, 2223
BmiI GGNNCC 4 cut(s) 470, 897, 1304, 1950
BmrFI CCNGG 7 cut(s) 466, 555, 611, 780, 987, 1307, 2292
BmrI ACTGGG 3 cut(s) 994, 1735, 2158
BmsI GCATC 5 cut(s) 376, 1031, 1225, 1722, 1752
BmuI ACTGGG 3 cut(s) 994, 1735, 2158
BpmI CTGGAG 3 cut(s) 855, 1044, 1233
BpuEI CTTGAG 2 cut(s) 1111, 2039
BpuMI CCSGG 2 cut(s) 466, 611
BsaAI YACGTR 1 cut(s) 40
BsaHI GRCGYC 1 cut(s) 896
BsaI GGTCTC 1 cut(s) 2195
BsaJI CCNNGG 4 cut(s) 287, 554, 778, 2291
BsaWI WCCGGW 1 cut(s) 1951
Bsc4I CCNNNNNNNGG 5 cut(s) 382, 617, 873, 1189, 1797
Bse1I ACTGG 9 cut(s) 410, 644, 838, 1000, 1183, 1730, 2164, 2173, 2370
BseAI TCCGGA 1 cut(s) 1951
BseBI CCWGG 5 cut(s) 555, 780, 987, 1307, 2292
BseDI CCNNGG 4 cut(s) 287, 554, 778, 2291
BseGI GGATG 7 cut(s) 391, 425, 564, 1046, 1240, 1628, 1972
BseLI CCNNNNNNNGG 5 cut(s) 382, 617, 873, 1189, 1797
BseMII CTCAG 3 cut(s) 272, 1919, 1992
BseNI ACTGG 9 cut(s) 410, 644, 838, 1000, 1183, 1730, 2164, 2173, 2370
BseRI GAGGAG 1 cut(s) 1859
BseXI GCAGC 5 cut(s) 376, 932, 954, 954, 1166
Bsh1236I CGCG 1 cut(s) 1517
Bsh1285I CGRYCG 1 cut(s) 2221
BshFI GGCC 7 cut(s) 489, 964, 1193, 1305, 1477, 1506, 2224
BshNI GGYRCC 1 cut(s) 895
BsiEI CGRYCG 1 cut(s) 2221
BsiHKAI GWGCWC 1 cut(s) 113
BsiHKCI CYCGRG 1 cut(s) 1761
BsiSI CCGG 3 cut(s) 465, 611, 1952
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 5 cut(s) 382, 617, 873, 1189, 1797
BsmAI GTCTC 4 cut(s) 1020, 1044, 2089, 2195
BsmFI GGGAC 1 cut(s) 259
BsmI GAATGC 1 cut(s) 1160
BsnI GGCC 7 cut(s) 489, 964, 1193, 1305, 1477, 1506, 2224
Bso31I GGTCTC 1 cut(s) 2195
BsoBI CYCGRG 1 cut(s) 1761
Bsp1286I GDGCHC 1 cut(s) 113
Bsp13I TCCGGA 1 cut(s) 1951
Bsp143I GATC 9 cut(s) 640, 664, 794, 1267, 1647, 1699, 1800, 2209, 2218
BspACI CCGC 8 cut(s) 98, 618, 874, 930, 965, 1517, 2031, 2226
BspANI GGCC 7 cut(s) 489, 964, 1193, 1305, 1477, 1506, 2224
BspCNI CTCAG 3 cut(s) 273, 1918, 1991
BspEI TCCGGA 1 cut(s) 1951
BspFNI CGCG 1 cut(s) 1517
BspLI GGNNCC 4 cut(s) 470, 897, 1304, 1950
BspMAI CTGCAG 1 cut(s) 682
BspPI GGATC 3 cut(s) 635, 1808, 2204
BspT107I GGYRCC 1 cut(s) 895
BspTI CTTAAG 1 cut(s) 1616
BspTNI GGTCTC 1 cut(s) 2195
BsrI ACTGG 9 cut(s) 410, 644, 838, 1000, 1183, 1730, 2164, 2173, 2370
BssECI CCNNGG 4 cut(s) 287, 554, 778, 2291
BssMI GATC 9 cut(s) 640, 664, 794, 1267, 1647, 1699, 1800, 2209, 2218
BssNAI GTATAC 1 cut(s) 1293
BssNI GRCGYC 1 cut(s) 896
Bst1107I GTATAC 1 cut(s) 1293
Bst2UI CCWGG 5 cut(s) 555, 780, 987, 1307, 2292
Bst4CI ACNGT 6 cut(s) 145, 173, 295, 448, 846, 1924
Bst6I CTCTTC 3 cut(s) 769, 1281, 1371
BstACI GRCGYC 1 cut(s) 896
BstAFI CTTAAG 1 cut(s) 1616
BstBAI YACGTR 1 cut(s) 40
BstC8I GCNNGC 5 cut(s) 65, 620, 928, 1553, 2226
BstDEI CTNAG 5 cut(s) 13, 281, 479, 1905, 1978
BstEII GGTNACC 1 cut(s) 368
BstF5I GGATG 7 cut(s) 391, 425, 564, 1046, 1240, 1628, 1972
BstFNI CGCG 1 cut(s) 1517
BstH2I RGCGCY 1 cut(s) 899
BstHHI GCGC 1 cut(s) 898
BstKTI GATC 9 cut(s) 643, 667, 797, 1270, 1650, 1702, 1803, 2212, 2221
BstMAI GTCTC 4 cut(s) 1020, 1044, 2089, 2195
BstMBI GATC 9 cut(s) 640, 664, 794, 1267, 1647, 1699, 1800, 2209, 2218
BstMCI CGRYCG 1 cut(s) 2221
BstMWI GCNNNNNNNGC 5 cut(s) 53, 939, 1176, 1185, 2319
BstNI CCWGG 5 cut(s) 555, 780, 987, 1307, 2292
BstNSI RCATGY 3 cut(s) 67, 1669, 1717
BstPI GGTNACC 1 cut(s) 368
BstSCI CCNGG 7 cut(s) 464, 553, 609, 778, 985, 1305, 2290
BstSFI CTRYAG 4 cut(s) 678, 1007, 1428, 1923
BstUI CGCG 1 cut(s) 1517
BstV1I GCAGC 5 cut(s) 376, 932, 954, 954, 1166
BstX2I RGATCY 4 cut(s) 640, 1267, 1647, 2209
BstYI RGATCY 4 cut(s) 640, 1267, 1647, 2209
BstZ17I GTATAC 1 cut(s) 1293
BsuI GTATCC 1 cut(s) 1463
BsuRI GGCC 7 cut(s) 489, 964, 1193, 1305, 1477, 1506, 2224
BtrI CACGTC 2 cut(s) 855, 2008
BtsCI GGATG 7 cut(s) 391, 425, 564, 1046, 1240, 1628, 1972
BtsI GCAGTG 3 cut(s) 490, 510, 1019
BtsIMutI CAGTG 8 cut(s) 300, 490, 510, 1019, 1190, 1920, 1986, 2180
Cac8I GCNNGC 5 cut(s) 65, 620, 928, 1553, 2226
CfoI GCGC 1 cut(s) 898
Cfr13I GGNCC 5 cut(s) 655, 1303, 1309, 1475, 2223
CseI GACGC 3 cut(s) 448, 460, 1433
Csp6I GTAC 4 cut(s) 403, 1394, 1663, 2201
CspCI CAANNNNNGTGG 2 cut(s) 21, 56
CviQI GTAC 4 cut(s) 403, 1394, 1663, 2201
DdeI CTNAG 5 cut(s) 13, 281, 479, 1905, 1978
DinI GGCGCC 1 cut(s) 897
DpnI GATC 9 cut(s) 642, 666, 796, 1269, 1649, 1701, 1802, 2211, 2220
DpnII GATC 9 cut(s) 640, 664, 794, 1267, 1647, 1699, 1800, 2209, 2218
EaeI YGGCCR 1 cut(s) 487
Eam1104I CTCTTC 3 cut(s) 769, 1281, 1371
EarI CTCTTC 3 cut(s) 769, 1281, 1371
Eco147I AGGCCT 1 cut(s) 1193
Eco31I GGTCTC 1 cut(s) 2195
Eco47I GGWCC 2 cut(s) 655, 1309
Eco57I CTGAAG 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 1761
Eco91I GGTNACC 1 cut(s) 368
EcoO109I RGGNCCY 1 cut(s) 1309
EcoO65I GGTNACC 1 cut(s) 368
EcoRI GAATTC 2 cut(s) 783, 1018
EcoRII CCWGG 5 cut(s) 553, 778, 985, 1305, 2290
EcoT22I ATGCAT 2 cut(s) 1963, 2092
EgeI GGCGCC 1 cut(s) 897
EheI GGCGCC 1 cut(s) 897
FalI AAGNNNNNCTT 2 cut(s) 1222, 1254
FaqI GGGAC 1 cut(s) 259
FauI CCCGC 2 cut(s) 611, 2233
FauNDI CATATG 3 cut(s) 151, 266, 1201
FbaI TGATCA 2 cut(s) 664, 1699
FblI GTMKAC 1 cut(s) 1292
Fnu4HI GCNGC 7 cut(s) 390, 931, 943, 946, 965, 968, 1180
FokI GGATG 7 cut(s) 398, 412, 571, 1053, 1247, 1635, 1979
Fsp4HI GCNGC 7 cut(s) 390, 931, 943, 946, 965, 968, 1180
FspBI CTAG 5 cut(s) 135, 339, 1421, 1838, 2337
GlaI GCGC 1 cut(s) 897
GluI GCNGC 7 cut(s) 390, 931, 943, 946, 965, 968, 1180
GsuI CTGGAG 3 cut(s) 855, 1044, 1233
HaeII RGCGCY 1 cut(s) 899
HaeIII GGCC 7 cut(s) 489, 964, 1193, 1305, 1477, 1506, 2224
HapII CCGG 3 cut(s) 465, 611, 1952
HgaI GACGC 3 cut(s) 448, 460, 1433
HhaI GCGC 1 cut(s) 898
Hin1I GRCGYC 1 cut(s) 896
Hin6I GCGC 1 cut(s) 896
HinP1I GCGC 1 cut(s) 896
HincII GTYRAC 4 cut(s) 24, 328, 411, 585
HindII GTYRAC 4 cut(s) 24, 328, 411, 585
HindIII AAGCTT 2 cut(s) 574, 1454
HpaI GTTAAC 1 cut(s) 24
HpaII CCGG 3 cut(s) 465, 611, 1952
HphI GGTGA 6 cut(s) 110, 228, 266, 832, 1531, 2236
Hpy166II GTNNAC 6 cut(s) 24, 328, 411, 585, 1293, 1483
Hpy8I GTNNAC 6 cut(s) 24, 328, 411, 585, 1293, 1483
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 7 cut(s) 236, 243, 1096, 1224, 1376, 1627, 2375
HpyCH4III ACNGT 6 cut(s) 145, 173, 295, 448, 846, 1924
HpyCH4IV ACGT 5 cut(s) 39, 854, 1137, 2007, 2238
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 939, 1176, 1185, 2319
HpyF3I CTNAG 5 cut(s) 13, 281, 479, 1905, 1978
HpySE526I ACGT 5 cut(s) 39, 854, 1137, 2007, 2238
Hsp92I GRCGYC 1 cut(s) 896
HspAI GCGC 1 cut(s) 896
KasI GGCGCC 1 cut(s) 895
Kpn2I TCCGGA 1 cut(s) 1951
Ksp22I TGATCA 2 cut(s) 664, 1699
KspAI GTTAAC 1 cut(s) 24
Kzo9I GATC 9 cut(s) 640, 664, 794, 1267, 1647, 1699, 1800, 2209, 2218
LmnI GCTCC 1 cut(s) 1954
Lsp1109I GCAGC 5 cut(s) 376, 932, 954, 954, 1166
LweI GCATC 5 cut(s) 376, 1031, 1225, 1722, 1752
MaeI CTAG 5 cut(s) 135, 339, 1421, 1838, 2337
MaeII ACGT 5 cut(s) 39, 854, 1137, 2007, 2238
MaeIII GTNAC 5 cut(s) 145, 368, 448, 682, 1940
MalI GATC 9 cut(s) 642, 666, 796, 1269, 1649, 1701, 1802, 2211, 2220
MboI GATC 9 cut(s) 640, 664, 794, 1267, 1647, 1699, 1800, 2209, 2218
MflI RGATCY 4 cut(s) 640, 1267, 1647, 2209
MhlI GDGCHC 1 cut(s) 113
MlsI TGGCCA 1 cut(s) 489
MluNI TGGCCA 1 cut(s) 489
Mly113I GGCGCC 1 cut(s) 896
MlyI GAGTC 7 cut(s) 241, 292, 440, 763, 1046, 1350, 2091
MmeI TCCRAC 5 cut(s) 363, 560, 703, 1870, 1909
Mox20I TGGCCA 1 cut(s) 489
Mph1103I ATGCAT 2 cut(s) 1963, 2092
MroI TCCGGA 1 cut(s) 1951
MscI TGGCCA 1 cut(s) 489
MseI TTAA 7 cut(s) 23, 825, 861, 921, 1172, 1617, 2126
Msp20I TGGCCA 1 cut(s) 489
MspA1I CMGCKG 3 cut(s) 945, 967, 2031
MspCI CTTAAG 1 cut(s) 1616
MspI CCGG 3 cut(s) 465, 611, 1952
MspR9I CCNGG 7 cut(s) 466, 555, 611, 780, 987, 1307, 2292
Mva1269I GAATGC 1 cut(s) 1160
MvaI CCWGG 5 cut(s) 555, 780, 987, 1307, 2292
MvnI CGCG 1 cut(s) 1517
MwoI GCNNNNNNNGC 5 cut(s) 53, 939, 1176, 1185, 2319
NarI GGCGCC 1 cut(s) 896
NciI CCSGG 2 cut(s) 466, 611
NdeI CATATG 3 cut(s) 151, 266, 1201
NdeII GATC 9 cut(s) 640, 664, 794, 1267, 1647, 1699, 1800, 2209, 2218
NlaIV GGNNCC 4 cut(s) 470, 897, 1304, 1950
NmuCI GTSAC 1 cut(s) 448
NsiI ATGCAT 2 cut(s) 1963, 2092
NspI RCATGY 3 cut(s) 67, 1669, 1717
PaeI GCATGC 1 cut(s) 67
PaeR7I CTCGAG 1 cut(s) 1761
PceI AGGCCT 1 cut(s) 1193
PctI GAATGC 1 cut(s) 1160
PfeI GAWTC 8 cut(s) 58, 179, 222, 461, 624, 1124, 1755, 1787
PflMI CCANNNNNTGG 1 cut(s) 382
PfoI TCCNGGA 1 cut(s) 464
PkrI GCNGC 7 cut(s) 391, 932, 944, 947, 966, 969, 1181
Ple19I CGATCG 1 cut(s) 2221
PleI GAGTC 7 cut(s) 241, 291, 439, 762, 1046, 1349, 2091
PluTI GGCGCC 1 cut(s) 899
PpsI GAGTC 7 cut(s) 241, 291, 439, 762, 1046, 1349, 2091
Ppu21I YACGTR 1 cut(s) 40
PpuMI RGGWCCY 1 cut(s) 1309
PshBI ATTAAT 2 cut(s) 825, 861
PsiI TTATAA 1 cut(s) 771
Psp1406I AACGTT 2 cut(s) 1137, 2238
Psp5II RGGWCCY 1 cut(s) 1309
Psp6I CCWGG 5 cut(s) 553, 778, 985, 1305, 2290
PspEI GGTNACC 1 cut(s) 368
PspGI CCWGG 5 cut(s) 553, 778, 985, 1305, 2290
PspN4I GGNNCC 4 cut(s) 470, 897, 1304, 1950
PspPI GGNCC 5 cut(s) 655, 1303, 1309, 1475, 2223
PspPPI RGGWCCY 1 cut(s) 1309
PspXI VCTCGAGB 1 cut(s) 1761
PstI CTGCAG 1 cut(s) 682
PsuI RGATCY 4 cut(s) 640, 1267, 1647, 2209
PvuI CGATCG 1 cut(s) 2221
PvuII CAGCTG 1 cut(s) 945
RsaI GTAC 4 cut(s) 404, 1395, 1664, 2202
RsaNI GTAC 4 cut(s) 403, 1394, 1663, 2201
SaqAI TTAA 7 cut(s) 23, 825, 861, 921, 1172, 1617, 2126
SatI GCNGC 7 cut(s) 390, 931, 943, 946, 965, 968, 1180
Sau3AI GATC 9 cut(s) 640, 664, 794, 1267, 1647, 1699, 1800, 2209, 2218
Sau96I GGNCC 5 cut(s) 655, 1303, 1309, 1475, 2223
SchI GAGTC 7 cut(s) 241, 292, 440, 763, 1046, 1350, 2091
ScrFI CCNGG 7 cut(s) 466, 555, 611, 780, 987, 1307, 2292
SduI GDGCHC 1 cut(s) 113
SfaNI GCATC 5 cut(s) 376, 1031, 1225, 1722, 1752
SfcI CTRYAG 4 cut(s) 678, 1007, 1428, 1923
SfoI GGCGCC 1 cut(s) 897
Sfr274I CTCGAG 1 cut(s) 1761
SinI GGWCC 2 cut(s) 655, 1309
SlaI CTCGAG 1 cut(s) 1761
SmlI CTYRAG 4 cut(s) 1090, 1616, 1761, 2018
SmoI CTYRAG 4 cut(s) 1090, 1616, 1761, 2018
SpeI ACTAGT 1 cut(s) 338
SphI GCATGC 1 cut(s) 67
SseBI AGGCCT 1 cut(s) 1193
SsiI CCGC 8 cut(s) 98, 618, 874, 930, 965, 1517, 2031, 2226
SspDI GGCGCC 1 cut(s) 895
SspI AATATT 2 cut(s) 511, 829
SspMI CTAG 5 cut(s) 135, 339, 1421, 1838, 2337
StuI AGGCCT 1 cut(s) 1193
StyD4I CCNGG 7 cut(s) 464, 553, 609, 778, 985, 1305, 2290
TaaI ACNGT 6 cut(s) 145, 173, 295, 448, 846, 1924
TaiI ACGT 5 cut(s) 42, 857, 1140, 2010, 2241
TaqI TCGA 3 cut(s) 649, 1228, 1762
TaqII GACCGA 1 cut(s) 2177
TatI WGTACW 1 cut(s) 1662
TauI GCSGC 2 cut(s) 933, 967
TfiI GAWTC 8 cut(s) 58, 179, 222, 461, 624, 1124, 1755, 1787
Tru1I TTAA 7 cut(s) 23, 825, 861, 921, 1172, 1617, 2126
Tru9I TTAA 7 cut(s) 23, 825, 861, 921, 1172, 1617, 2126
TscAI CASTG 8 cut(s) 300, 490, 510, 1019, 1190, 1927, 1986, 2180
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 5 cut(s) 389, 942, 945, 967, 1179
Tsp45I GTSAC 1 cut(s) 448
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 8 cut(s) 300, 490, 510, 1019, 1190, 1927, 1986, 2180
Van91I CCANNNNNTGG 1 cut(s) 382
Vha464I CTTAAG 1 cut(s) 1616
VpaK11BI GGWCC 2 cut(s) 655, 1309
VspI ATTAAT 2 cut(s) 825, 861
XapI RAATTY 6 cut(s) 700, 727, 783, 880, 1018, 1559
XbaI TCTAGA 1 cut(s) 1837
XceI RCATGY 3 cut(s) 67, 1669, 1717
XhoI CTCGAG 1 cut(s) 1761
XmiI GTMKAC 1 cut(s) 1292
XspI CTAG 5 cut(s) 135, 339, 1421, 1838, 2337
Zsp2I ATGCAT 2 cut(s) 1963, 2092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.