pycom07g15320

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000412
Physical Location & Seq
Reverse (-)
17599632 .. 17599960
329 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g15320.1

Sequence Viewer

Length: 246 bp
ATGAAATTCCTGCAAGGAATTCCTCCACGATCAGAATACAATTATACAAGGTTGGTGATTAATATGACTGGAGAGATACAATTTTGGACGTGGTTTAATTCCACAAAGCACTGCAATAGTAATAATAGGCCGCTGCTGTGCAAATATTTGCCAGGTTTCAAGCCCCAGTATCTACAGCAATGGAATTCTGGAGACTTTTCAGGTGAATGCATAAGAGACTGCATTATGTTGCAACAAGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin GUB_WAK_bind PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

82

Amino Acids

9.68

Weight (kDa)

7.65

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230
fragaria_vesca FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44244 FvH4_6g44245 FvH4_6g44245 FvH4_6g44260
malus_domestica MD04G1084700.v1.1 MD09G1099700.v1.1 MD09G1099800.v1.1 MD09G1099900.v1.1 MD09G1100000.v1.1 MD09G1100100.v1.1 MD17G1087900.v1.1
prunus_persica Prupe.3G226000_v2.0.a1 Prupe.3G226200_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226600_v2.0.a1 Prupe.3G226700_v2.0.a1
pyrus_communis pycom02g23070 pycom07g15320 pycom09g02310 pycom09g02330 pycom09g02340 pycom09g02350 pycom09g02360 pycom09g02400 pycom09g02410 pycom09g02430 pycom10g07020 pycom17g08490
rosa_chinensis RchiOBHm_Chr1g0328701 RchiOBHm_Chr2g0161021 RchiOBHm_Chr2g0161031 RchiOBHm_Chr2g0161081 RchiOBHm_Chr2g0161101
rosa_laevigata RLG00000021249 RLG00000021250 RLG00000021251 RLG00000021253 RLG00000021257 RLG00000029922
rosa_multiflora Rmu_sc0000955.1_g000023 Rmu_sc0000955.1_g000025 Rmu_sc0000955.1_g000041 Rmu_sc0002312.1_g000012 Rmu_sc0002481.1_g000021 Rmu_sc0002481.1_g000026 Rmu_sc0002481.1_g000028 Rmu_sc0002481.1_g000039 Rmu_sc0006420.1_g000017
rosa_roxburghii Rroxscaffold_2G00089160 Rroxscaffold_2G00089200 Rroxscaffold_2G00089220 Rroxscaffold_2G00089270 Rroxscaffold_2G00089300 Rroxscaffold_4G00321430
rosa_rugosa Rorug02G0485900 Rorug02G0486100 Rorug03G0345100
rosa_samantha Rh1AG094100 Rh1DG097200 Rh2AG552000 Rh2AG552100 Rh2AG552200 Rh2AG552300 Rh2AG552500 Rh2BG566400 Rh2BG566500 Rh2CG535800 Rh2CG535900 Rh2CG536100 Rh2CG536200 Rh2DG575000 Rh2DG575100 Rh2DG575400 Rh2DG575500 Rh2DG575600 Rh4AG077200 Rh4CG082400
rosa_wichuraiana Rw2G045690 Rw2G045700 Rw2G045710 Rw4G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 131
AcsI RAATTY 3 cut(s) 5, 18, 184
AgsI TTSAA 1 cut(s) 160
AjiI CACGTC 1 cut(s) 90
AjnI CCWGG 1 cut(s) 151
Alw26I GTCTC 2 cut(s) 186, 210
AoxI GGCC 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 133
ApoI RAATTY 3 cut(s) 5, 18, 184
AseI ATTAAT 1 cut(s) 60
AsuHPI GGTGA 2 cut(s) 67, 215
BbvI GCAGC 1 cut(s) 120
BciT130I CCWGG 1 cut(s) 153
BcoDI GTCTC 2 cut(s) 186, 210
BfmI CTRYAG 1 cut(s) 173
BisI GCNGC 2 cut(s) 131, 134
BlsI GCNGC 2 cut(s) 132, 135
Bme1390I CCNGG 1 cut(s) 153
BmgBI CACGTC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 153
BmrI ACTGGG 1 cut(s) 160
BmuI ACTGGG 1 cut(s) 160
BpmI CTGGAG 2 cut(s) 90, 210
Bse1I ACTGG 2 cut(s) 73, 166
Bse3DI GCAATG 1 cut(s) 185
BseBI CCWGG 1 cut(s) 153
BseMI GCAATG 1 cut(s) 185
BseNI ACTGG 2 cut(s) 73, 166
BseXI GCAGC 1 cut(s) 120
BshFI GGCC 1 cut(s) 130
BsmAI GTCTC 2 cut(s) 186, 210
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 29
BspACI CCGC 1 cut(s) 131
BspANI GGCC 1 cut(s) 130
BsrDI GCAATG 1 cut(s) 185
BsrI ACTGG 2 cut(s) 73, 166
BssMI GATC 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 153
BstKTI GATC 1 cut(s) 32
BstMAI GTCTC 2 cut(s) 186, 210
BstMBI GATC 1 cut(s) 29
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BstSFI CTRYAG 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 120
BsuRI GGCC 1 cut(s) 130
BtrI CACGTC 1 cut(s) 90
BtsI GCAGTG 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 109
CviJI RGCY 2 cut(s) 130, 163
CviKI_1 RGCY 2 cut(s) 130, 163
DpnI GATC 1 cut(s) 31
DpnII GATC 1 cut(s) 29
EcoRI GAATTC 2 cut(s) 18, 184
EcoRII CCWGG 1 cut(s) 151
EcoT22I ATGCAT 1 cut(s) 212
FaiI YATR 4 cut(s) 45, 65, 212, 227
Fnu4HI GCNGC 2 cut(s) 131, 134
Fsp4HI GCNGC 2 cut(s) 131, 134
GluI GCNGC 2 cut(s) 131, 134
GsuI CTGGAG 2 cut(s) 90, 210
HaeIII GGCC 1 cut(s) 130
HphI GGTGA 2 cut(s) 67, 215
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 1 cut(s) 189
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 6 cut(s) 13, 114, 141, 210, 222, 232
HpySE526I ACGT 1 cut(s) 89
Kzo9I GATC 1 cut(s) 29
LpnPI CCDG 7 cut(s) 23, 54, 138, 165, 174, 179, 186
Lsp1109I GCAGC 1 cut(s) 120
MaeII ACGT 1 cut(s) 89
MalI GATC 1 cut(s) 31
MboI GATC 1 cut(s) 29
MluCI AATT 6 cut(s) 5, 18, 40, 80, 97, 184
MnlI CCTC 1 cut(s) 33
Mph1103I ATGCAT 1 cut(s) 212
MseI TTAA 2 cut(s) 60, 96
MspA1I CMGCKG 1 cut(s) 133
MspR9I CCNGG 1 cut(s) 153
Mva1269I GAATGC 1 cut(s) 212
MvaI CCWGG 1 cut(s) 153
NdeII GATC 1 cut(s) 29
NsiI ATGCAT 1 cut(s) 212
PctI GAATGC 1 cut(s) 212
PkrI GCNGC 2 cut(s) 132, 135
PshBI ATTAAT 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
SaqAI TTAA 2 cut(s) 60, 96
SatI GCNGC 2 cut(s) 131, 134
Sau3AI GATC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 153
SetI ASST 4 cut(s) 53, 92, 157, 205
SfcI CTRYAG 1 cut(s) 173
Sse9I AATT 6 cut(s) 5, 18, 40, 80, 97, 184
SsiI CCGC 1 cut(s) 131
SspI AATATT 1 cut(s) 146
StyD4I CCNGG 1 cut(s) 151
TaiI ACGT 1 cut(s) 92
TasI AATT 6 cut(s) 5, 18, 40, 80, 97, 184
TauI GCSGC 1 cut(s) 133
Tru1I TTAA 2 cut(s) 60, 96
Tru9I TTAA 2 cut(s) 60, 96
TscAI CASTG 1 cut(s) 116
TseI GCWGC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 116
VspI ATTAAT 1 cut(s) 60
XapI RAATTY 3 cut(s) 5, 18, 184
Zsp2I ATGCAT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.