Rh1AG094100

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000412
Physical Location & Seq
Forward (+)
16393849 .. 16395164
1316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG094100.1

Sequence Viewer

Length: 255 bp
ATGTGCAATGCTGATCCAACCCGTTTTAGTCCTGACTTGTCATTTAAAGGAGGCTATGAAGTTGAAGTTGCTTGGGAGTCACTCTTGAAACCACCTTGTTCCTCATCTACAGACTGCAAGGACTGGCCTCATTCGATATGTGATGCTGCTCTAGATGGCAAGGATAGGCTTCTTTGCCCTGCAAACTCAAAATGGGATAGCAGGAGTTTAAATTGTATTCAAGTTTGGACAGCTTGCATTTGCTCATCGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin GUB_WAK_bind PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

84

Amino Acids

9.31

Weight (kDa)

4.83

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230
fragaria_vesca FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44244 FvH4_6g44245 FvH4_6g44245 FvH4_6g44260
malus_domestica MD04G1084700.v1.1 MD09G1099700.v1.1 MD09G1099800.v1.1 MD09G1099900.v1.1 MD09G1100000.v1.1 MD09G1100100.v1.1 MD17G1087900.v1.1
prunus_persica Prupe.3G226000_v2.0.a1 Prupe.3G226200_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226600_v2.0.a1 Prupe.3G226700_v2.0.a1
pyrus_communis pycom02g23070 pycom07g15320 pycom09g02310 pycom09g02330 pycom09g02340 pycom09g02350 pycom09g02360 pycom09g02400 pycom09g02410 pycom09g02430 pycom10g07020 pycom17g08490
rosa_chinensis RchiOBHm_Chr1g0328701 RchiOBHm_Chr2g0161021 RchiOBHm_Chr2g0161031 RchiOBHm_Chr2g0161081 RchiOBHm_Chr2g0161101
rosa_laevigata RLG00000021249 RLG00000021250 RLG00000021251 RLG00000021253 RLG00000021257 RLG00000029922
rosa_multiflora Rmu_sc0000955.1_g000023 Rmu_sc0000955.1_g000025 Rmu_sc0000955.1_g000041 Rmu_sc0002312.1_g000012 Rmu_sc0002481.1_g000021 Rmu_sc0002481.1_g000026 Rmu_sc0002481.1_g000028 Rmu_sc0002481.1_g000039 Rmu_sc0006420.1_g000017
rosa_roxburghii Rroxscaffold_2G00089160 Rroxscaffold_2G00089200 Rroxscaffold_2G00089220 Rroxscaffold_2G00089270 Rroxscaffold_2G00089300 Rroxscaffold_4G00321430
rosa_rugosa Rorug02G0485900 Rorug02G0486100 Rorug03G0345100
rosa_samantha Rh1AG094100 Rh1DG097200 Rh2AG552000 Rh2AG552100 Rh2AG552200 Rh2AG552300 Rh2AG552500 Rh2BG566400 Rh2BG566500 Rh2CG535800 Rh2CG535900 Rh2CG536100 Rh2CG536200 Rh2DG575000 Rh2DG575100 Rh2DG575400 Rh2DG575500 Rh2DG575600 Rh4AG077200 Rh4CG082400
rosa_wichuraiana Rw2G045690 Rw2G045700 Rw2G045710 Rw4G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 8
AgsI TTSAA 3 cut(s) 65, 88, 221
AluBI AGCT 1 cut(s) 233
AluI AGCT 1 cut(s) 233
AlwI GGATC 1 cut(s) 8
AoxI GGCC 1 cut(s) 125
ApeKI GCWGC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 133
BccI CCATC 1 cut(s) 149
BfaI CTAG 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 108
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
BmsI GCATC 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 128
Bse3DI GCAATG 1 cut(s) 13
BseMI GCAATG 1 cut(s) 13
BseNI ACTGG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 133
BshFI GGCC 1 cut(s) 127
BsnI GGCC 1 cut(s) 127
Bsp143I GATC 1 cut(s) 13
BspANI GGCC 1 cut(s) 127
BspPI GGATC 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 13
BsrI ACTGG 1 cut(s) 128
BssMI GATC 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 235
BstKTI GATC 1 cut(s) 16
BstMBI GATC 1 cut(s) 13
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 133
BsuRI GGCC 1 cut(s) 127
Cac8I GCNNGC 1 cut(s) 235
CviJI RGCY 4 cut(s) 54, 127, 169, 233
CviKI_1 RGCY 4 cut(s) 54, 127, 169, 233
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
DraI TTTAAA 2 cut(s) 46, 210
FaiI YATR 2 cut(s) 57, 139
Fnu4HI GCNGC 1 cut(s) 147
Fsp4HI GCNGC 1 cut(s) 147
FspBI CTAG 1 cut(s) 152
GluI GCNGC 1 cut(s) 147
HaeIII GGCC 1 cut(s) 127
HinfI GANTC 1 cut(s) 77
Hpy188III TCNNGA 3 cut(s) 32, 85, 152
HpyCH4V TGCA 4 cut(s) 6, 117, 182, 237
Kzo9I GATC 1 cut(s) 13
LpnPI CCDG 4 cut(s) 45, 109, 187, 192
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 1 cut(s) 133
MaeI CTAG 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 78
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MluCI AATT 1 cut(s) 211
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 3 cut(s) 44, 112, 138
MseI TTAA 3 cut(s) 45, 209, 253
NdeII GATC 1 cut(s) 13
NmuCI GTSAC 1 cut(s) 78
PkrI GCNGC 1 cut(s) 148
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
SaqAI TTAA 3 cut(s) 45, 209, 253
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 1 cut(s) 13
SchI GAGTC 1 cut(s) 86
SetI ASST 2 cut(s) 97, 235
SfaNI GCATC 1 cut(s) 133
SfcI CTRYAG 1 cut(s) 108
Sse9I AATT 1 cut(s) 211
SspMI CTAG 1 cut(s) 152
TaqI TCGA 1 cut(s) 134
TasI AATT 1 cut(s) 211
Tru1I TTAA 3 cut(s) 45, 209, 253
Tru9I TTAA 3 cut(s) 45, 209, 253
TseFI GTSAC 1 cut(s) 78
TseI GCWGC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 78
TspDTI ATGAA 1 cut(s) 72
XbaI TCTAGA 1 cut(s) 151
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.