Rh2CG536100

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000412
Physical Location & Seq
Reverse (-)
71316773 .. 71319016
2244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG536100.1

Sequence Viewer

Length: 186 bp
ATGGAGAAGAAAGATGACCAGAAAACAAGTCGTCCCCAGCTTGATAGTGAAAGACGAGTCAAGGAGTTGATAGACACAAGTGAGTTCAATGAAGAAGATGATCAGAAAGACATGGGGACTGTGGACAGAAGACAGGGTGTTGGATTTAATGGACAAGAATTTGGAAGAAAGTTGCAACAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin GUB_WAK_bind PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

61

Amino Acids

7.2

Weight (kDa)

5.09

Isoelectric Point (pI)

57.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230
fragaria_vesca FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44244 FvH4_6g44245 FvH4_6g44245 FvH4_6g44260
malus_domestica MD04G1084700.v1.1 MD09G1099700.v1.1 MD09G1099800.v1.1 MD09G1099900.v1.1 MD09G1100000.v1.1 MD09G1100100.v1.1 MD17G1087900.v1.1
prunus_persica Prupe.3G226000_v2.0.a1 Prupe.3G226200_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226600_v2.0.a1 Prupe.3G226700_v2.0.a1
pyrus_communis pycom02g23070 pycom07g15320 pycom09g02310 pycom09g02330 pycom09g02340 pycom09g02350 pycom09g02360 pycom09g02400 pycom09g02410 pycom09g02430 pycom10g07020 pycom17g08490
rosa_chinensis RchiOBHm_Chr1g0328701 RchiOBHm_Chr2g0161021 RchiOBHm_Chr2g0161031 RchiOBHm_Chr2g0161081 RchiOBHm_Chr2g0161101
rosa_laevigata RLG00000021249 RLG00000021250 RLG00000021251 RLG00000021253 RLG00000021257 RLG00000029922
rosa_multiflora Rmu_sc0000955.1_g000023 Rmu_sc0000955.1_g000025 Rmu_sc0000955.1_g000041 Rmu_sc0002312.1_g000012 Rmu_sc0002481.1_g000021 Rmu_sc0002481.1_g000026 Rmu_sc0002481.1_g000028 Rmu_sc0002481.1_g000039 Rmu_sc0006420.1_g000017
rosa_roxburghii Rroxscaffold_2G00089160 Rroxscaffold_2G00089200 Rroxscaffold_2G00089220 Rroxscaffold_2G00089270 Rroxscaffold_2G00089300 Rroxscaffold_4G00321430
rosa_rugosa Rorug02G0485900 Rorug02G0486100 Rorug03G0345100
rosa_samantha Rh1AG094100 Rh1DG097200 Rh2AG552000 Rh2AG552100 Rh2AG552200 Rh2AG552300 Rh2AG552500 Rh2BG566400 Rh2BG566500 Rh2CG535800 Rh2CG535900 Rh2CG536100 Rh2CG536200 Rh2DG575000 Rh2DG575100 Rh2DG575400 Rh2DG575500 Rh2DG575600 Rh4AG077200 Rh4CG082400
rosa_wichuraiana Rw2G045690 Rw2G045700 Rw2G045710 Rw4G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 158
AgsI TTSAA 1 cut(s) 88
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
ApoI RAATTY 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 136
BclI TGATCA 1 cut(s) 100
BpiI GAAGAC 1 cut(s) 136
BseYI CCCAGC 1 cut(s) 36
BslFI GGGAC 2 cut(s) 18, 130
BsmFI GGGAC 2 cut(s) 18, 130
Bsp143I GATC 1 cut(s) 100
BssMI GATC 1 cut(s) 100
Bst4CI ACNGT 1 cut(s) 121
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstV2I GAAGAC 1 cut(s) 136
CviAII CATG 1 cut(s) 112
CviJI RGCY 1 cut(s) 40
CviKI_1 RGCY 1 cut(s) 40
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
FaeI CATG 1 cut(s) 115
FaiI YATR 1 cut(s) 113
FaqI GGGAC 2 cut(s) 18, 130
FatI CATG 1 cut(s) 111
FbaI TGATCA 1 cut(s) 100
GsaI CCCAGC 1 cut(s) 40
Hin1II CATG 1 cut(s) 115
HinfI GANTC 1 cut(s) 57
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 1 cut(s) 105
Hpy8I GTNNAC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 1 cut(s) 175
Hsp92II CATG 1 cut(s) 115
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 1 cut(s) 100
LpnPI CCDG 3 cut(s) 32, 50, 119
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 5 cut(s) 19, 104, 107, 141, 177
MluCI AATT 1 cut(s) 158
MlyI GAGTC 1 cut(s) 66
MmeI TCCRAC 1 cut(s) 121
MseI TTAA 1 cut(s) 147
NdeII GATC 1 cut(s) 100
NlaIII CATG 1 cut(s) 115
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
PspFI CCCAGC 1 cut(s) 36
SaqAI TTAA 1 cut(s) 147
Sau3AI GATC 1 cut(s) 100
SchI GAGTC 1 cut(s) 66
SetI ASST 1 cut(s) 42
Sse9I AATT 1 cut(s) 158
TaaI ACNGT 1 cut(s) 121
TasI AATT 1 cut(s) 158
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TspDTI ATGAA 1 cut(s) 105
XapI RAATTY 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.