Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002481.1

Orthogroup ID

OG0000412

Physical Location & Seq

Genomic Coordinates Reverse (-)

111883 .. 112795

Gene Structure 913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002481.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atgaaggtgaacaacgcaggaagcccagagtcacagacctatgttaccaatgatacagaatgcaagaatgtgtgccttggtagttgcaagtgccaggcttactcatctgcttcacatgtaaatgttactgctcgaagggatgatctcaagaatgtcatttgttatatatggtccacggatctaaataatgttgtagaagagtctggtaactatggccagaacctcaatgctcgagtatcgctgtctgatttagaatcaactgtgagagactgcgacccttgtggcacaaccaccaccggaacaaattgtggcgaccccaggtacttaagtttctggtgcaagtcatgcaacacctccagtattgaatttaacttcccgggattagatactacctcctttagagttataaatatcagccgaagtacacaacgattcattgtcaaatccaaaaatatggattattgtgattctagaaacagagtgctgaatatttccctcccgtttaaggtaatcagttggtgcagttctgacctgataaagaatattaaatctggcataaattcatccagcggtccttctgtaatagagattggctgggagccaccctcagaaccaacttgcactacgttaaaagactacagggattggccaaattcaacttgcaatccagtaagaggtggaaagaaaaaatgcctttacaatacaaattttcaattgagtggctctaacataaattgtactcaaggtgagaatgttgtgcctcttgtaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin GUB_WAK_bind PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

257

Amino Acids

28.41

Weight (kDa)

7.83

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230
fragaria_vesca	FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44244 FvH4_6g44245 FvH4_6g44245 FvH4_6g44260
malus_domestica	MD04G1084700.v1.1 MD09G1099700.v1.1 MD09G1099800.v1.1 MD09G1099900.v1.1 MD09G1100000.v1.1 MD09G1100100.v1.1 MD17G1087900.v1.1
prunus_persica	Prupe.3G226000_v2.0.a1 Prupe.3G226200_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226600_v2.0.a1 Prupe.3G226700_v2.0.a1
pyrus_communis	pycom02g23070 pycom07g15320 pycom09g02310 pycom09g02330 pycom09g02340 pycom09g02350 pycom09g02360 pycom09g02400 pycom09g02410 pycom09g02430 pycom10g07020 pycom17g08490
rosa_chinensis	RchiOBHm_Chr1g0328701 RchiOBHm_Chr2g0161021 RchiOBHm_Chr2g0161031 RchiOBHm_Chr2g0161081 RchiOBHm_Chr2g0161101
rosa_laevigata	RLG00000021249 RLG00000021250 RLG00000021251 RLG00000021253 RLG00000021257 RLG00000029922
rosa_multiflora	Rmu_sc0000955.1_g000023 Rmu_sc0000955.1_g000025 Rmu_sc0000955.1_g000041 Rmu_sc0002312.1_g000012 Rmu_sc0002481.1_g000021 Rmu_sc0002481.1_g000026 Rmu_sc0002481.1_g000028 Rmu_sc0002481.1_g000039 Rmu_sc0006420.1_g000017
rosa_roxburghii	Rroxscaffold_2G00089160 Rroxscaffold_2G00089200 Rroxscaffold_2G00089220 Rroxscaffold_2G00089270 Rroxscaffold_2G00089300 Rroxscaffold_4G00321430
rosa_rugosa	Rorug02G0485900 Rorug02G0486100 Rorug03G0345100
rosa_samantha	Rh1AG094100 Rh1DG097200 Rh2AG552000 Rh2AG552100 Rh2AG552200 Rh2AG552300 Rh2AG552500 Rh2BG566400 Rh2BG566500 Rh2CG535800 Rh2CG535900 Rh2CG536100 Rh2CG536200 Rh2DG575000 Rh2DG575100 Rh2DG575400 Rh2DG575500 Rh2DG575600 Rh4AG077200 Rh4CG082400
rosa_wichuraiana	Rw2G045690 Rw2G045700 Rw2G045710 Rw4G006230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	407
AciI	CCGC	1 cut(s)	570
AclWI	GGATC	1 cut(s)	186
AcoI	YGGCCR	2 cut(s)	214, 647
AcsI	RAATTY	4 cut(s)	365, 559, 652, 706
AfaI	GTAC	3 cut(s)	323, 424, 739
AfiI	CCNNNNNNNGG	2 cut(s)	505, 674
AflII	CTTAAG	1 cut(s)	325
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	3 cut(s)	365, 657, 713
AjnI	CCWGG	2 cut(s)	93, 317
Alw26I	GTCTC	1 cut(s)	261
AlwI	GGATC	1 cut(s)	186
Ama87I	CYCGRG	2 cut(s)	231, 376
AoxI	GGCC	2 cut(s)	214, 647
ApoI	RAATTY	4 cut(s)	365, 559, 652, 706
AspS9I	GGNCC	2 cut(s)	171, 572
AsuC2I	CCSGG	2 cut(s)	377, 378
AsuHPI	GGTGA	2 cut(s)	19, 758
AvaI	CYCGRG	2 cut(s)	231, 376
AvaII	GGWCC	2 cut(s)	171, 572
BaeI	ACNNNNGTAYC	2 cut(s)	313, 346
BalI	TGGCCA	2 cut(s)	216, 649
BciT130I	CCWGG	2 cut(s)	95, 319
BcnI	CCSGG	2 cut(s)	377, 378
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	1 cut(s)	471
BfmI	CTRYAG	1 cut(s)	637
BfrI	CTTAAG	1 cut(s)	325
Bme1390I	CCNGG	4 cut(s)	95, 319, 377, 378
Bme18I	GGWCC	2 cut(s)	171, 572
BmeT110I	CYCGRG	2 cut(s)	231, 376
BmgT120I	GGNCC	2 cut(s)	171, 572
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	4 cut(s)	95, 319, 377, 378
BplI	GAGNNNNNCTC	2 cut(s)	590, 622
BpmI	CTGGAG	1 cut(s)	340
BpuEI	CTTGAG	2 cut(s)	131, 726
BpuMI	CCSGG	2 cut(s)	377, 378
BsaJI	CCNNGG	4 cut(s)	76, 174, 317, 376
BsaWI	WCCGGW	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	2 cut(s)	505, 674
Bse1I	ACTGG	2 cut(s)	357, 668
BseBI	CCWGG	2 cut(s)	95, 319
BseDI	CCNNGG	4 cut(s)	76, 174, 317, 376
BseGI	GGATG	2 cut(s)	145, 563
BseLI	CCNNNNNNNGG	2 cut(s)	505, 674
BseMII	CTCAG	1 cut(s)	621
BseNI	ACTGG	2 cut(s)	357, 668
BseYI	CCCAGC	1 cut(s)	594
BsgI	GTGCAG	1 cut(s)	541
BshFI	GGCC	2 cut(s)	216, 649
BsiHKCI	CYCGRG	2 cut(s)	231, 376
BsiSI	CCGG	2 cut(s)	297, 377
BslI	CCNNNNNNNGG	2 cut(s)	505, 674
BsmAI	GTCTC	1 cut(s)	261
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	2 cut(s)	216, 649
BsoBI	CYCGRG	2 cut(s)	231, 376
Bsp143I	GATC	2 cut(s)	142, 178
BspACI	CCGC	1 cut(s)	570
BspANI	GGCC	2 cut(s)	216, 649
BspCNI	CTCAG	1 cut(s)	620
BspLI	GGNNCC	1 cut(s)	600
BspPI	GGATC	1 cut(s)	186
BspTI	CTTAAG	1 cut(s)	325
BsrI	ACTGG	2 cut(s)	357, 668
BssECI	CCNNGG	4 cut(s)	76, 174, 317, 376
BssMI	GATC	2 cut(s)	142, 178
BssT1I	CCWWGG	1 cut(s)	76
Bst2UI	CCWGG	2 cut(s)	95, 319
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	1 cut(s)	192
BstAFI	CTTAAG	1 cut(s)	325
BstAPI	GCANNNNNTGC	1 cut(s)	345
BstDEI	CTNAG	1 cut(s)	607
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	145, 563
BstKTI	GATC	2 cut(s)	145, 181
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	2 cut(s)	142, 178
BstMWI	GCNNNNNNNGC	1 cut(s)	345
BstNI	CCWGG	2 cut(s)	95, 319
BstNSI	RCATGY	1 cut(s)	119
BstSCI	CCNGG	4 cut(s)	93, 317, 375, 376
BstSFI	CTRYAG	1 cut(s)	637
BstX2I	RGATCY	1 cut(s)	178
BstXI	CCANNNNNNTGG	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	2 cut(s)	216, 649
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	145, 563
Cfr13I	GGNCC	2 cut(s)	171, 572
Cfr9I	CCCGGG	1 cut(s)	376
Csp6I	GTAC	3 cut(s)	322, 423, 738
CviAII	CATG	2 cut(s)	116, 345
CviJI	RGCY	8 cut(s)	24, 98, 216, 417, 594, 601, 649, 723
CviKI_1	RGCY	8 cut(s)	24, 98, 216, 417, 594, 601, 649, 723
CviQI	GTAC	3 cut(s)	322, 423, 738
DdeI	CTNAG	1 cut(s)	607
DpnI	GATC	2 cut(s)	144, 180
DpnII	GATC	2 cut(s)	142, 178
EaeI	YGGCCR	2 cut(s)	214, 647
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	76
Eco47I	GGWCC	2 cut(s)	171, 572
Eco88I	CYCGRG	2 cut(s)	231, 376
EcoRII	CCWGG	2 cut(s)	93, 317
EcoT14I	CCWWGG	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	2 cut(s)	119, 348
FatI	CATG	2 cut(s)	115, 344
FokI	GGATG	2 cut(s)	152, 550
FspBI	CTAG	1 cut(s)	471
GsaI	CCCAGC	1 cut(s)	598
GsuI	CTGGAG	1 cut(s)	340
HaeIII	GGCC	2 cut(s)	216, 649
HapII	CCGG	2 cut(s)	297, 377
Hin1II	CATG	2 cut(s)	119, 348
HinfI	GANTC	5 cut(s)	29, 200, 254, 432, 467
HpaII	CCGG	2 cut(s)	297, 377
HphI	GGTGA	2 cut(s)	19, 758
Hpy166II	GTNNAC	3 cut(s)	10, 174, 425
Hpy188I	TCNGA	3 cut(s)	247, 529, 610
Hpy188III	TCNNGA	2 cut(s)	148, 471
Hpy8I	GTNNAC	3 cut(s)	10, 174, 425
HpyAV	CCTTC	2 cut(s)	129, 585
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4IV	ACGT	1 cut(s)	626
HpyCH4V	TGCA	7 cut(s)	63, 87, 339, 348, 522, 621, 663
HpyF10VI	GCNNNNNNNGC	1 cut(s)	345
HpyF3I	CTNAG	1 cut(s)	607
HpySE526I	ACGT	1 cut(s)	626
Hsp92II	CATG	2 cut(s)	119, 348
Kzo9I	GATC	2 cut(s)	142, 178
LmnI	GCTCC	1 cut(s)	598
MaeI	CTAG	1 cut(s)	471
MaeII	ACGT	1 cut(s)	626
MaeIII	GTNAC	4 cut(s)	30, 43, 124, 206
MalI	GATC	2 cut(s)	144, 180
MboI	GATC	2 cut(s)	142, 178
MboII	GAAGA	1 cut(s)	209
MfeI	CAATTG	1 cut(s)	713
MflI	RGATCY	1 cut(s)	178
MlsI	TGGCCA	2 cut(s)	216, 649
MluCI	AATT	8 cut(s)	304, 365, 559, 652, 706, 713, 733, 769
MluNI	TGGCCA	2 cut(s)	216, 649
MlyI	GAGTC	2 cut(s)	38, 209
MnlI	CCTC	7 cut(s)	233, 364, 403, 506, 616, 668, 771
Mox20I	TGGCCA	2 cut(s)	216, 649
MscI	TGGCCA	2 cut(s)	216, 649
MseI	TTAA	5 cut(s)	326, 369, 504, 546, 629
MslI	CAYNNNNRTG	1 cut(s)	120
Msp20I	TGGCCA	2 cut(s)	216, 649
MspA1I	CMGCKG	1 cut(s)	570
MspCI	CTTAAG	1 cut(s)	325
MspI	CCGG	2 cut(s)	297, 377
MspR9I	CCNGG	4 cut(s)	95, 319, 377, 378
MunI	CAATTG	1 cut(s)	713
Mva1269I	GAATGC	1 cut(s)	65
MvaI	CCWGG	2 cut(s)	95, 319
MwoI	GCNNNNNNNGC	1 cut(s)	345
NciI	CCSGG	2 cut(s)	377, 378
NdeII	GATC	2 cut(s)	142, 178
NlaIII	CATG	2 cut(s)	119, 348
NlaIV	GGNNCC	1 cut(s)	600
NmuCI	GTSAC	1 cut(s)	30
NspI	RCATGY	1 cut(s)	119
PaeR7I	CTCGAG	1 cut(s)	231
PciI	ACATGT	1 cut(s)	115
PctI	GAATGC	1 cut(s)	65
PfeI	GAWTC	3 cut(s)	254, 432, 467
PleI	GAGTC	2 cut(s)	37, 208
PpsI	GAGTC	2 cut(s)	37, 208
PscI	ACATGT	1 cut(s)	115
PsiI	TTATAA	1 cut(s)	407
Psp6I	CCWGG	2 cut(s)	93, 317
PspFI	CCCAGC	1 cut(s)	594
PspGI	CCWGG	2 cut(s)	93, 317
PspN4I	GGNNCC	1 cut(s)	600
PspPI	GGNCC	2 cut(s)	171, 572
PspXI	VCTCGAGB	1 cut(s)	231
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	3 cut(s)	323, 424, 739
RsaNI	GTAC	3 cut(s)	322, 423, 738
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	5 cut(s)	326, 369, 504, 546, 629
Sau3AI	GATC	2 cut(s)	142, 178
Sau96I	GGNCC	2 cut(s)	171, 572
SchI	GAGTC	2 cut(s)	38, 209
ScrFI	CCNGG	4 cut(s)	95, 319, 377, 378
SfcI	CTRYAG	1 cut(s)	637
Sfr274I	CTCGAG	1 cut(s)	231
SinI	GGWCC	2 cut(s)	171, 572
SlaI	CTCGAG	1 cut(s)	231
SmaI	CCCGGG	1 cut(s)	378
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	4 cut(s)	146, 231, 325, 741
SmoI	CTYRAG	4 cut(s)	146, 231, 325, 741
Sse9I	AATT	8 cut(s)	304, 365, 559, 652, 706, 713, 733, 769
SsiI	CCGC	1 cut(s)	570
SspI	AATATT	2 cut(s)	490, 544
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	4 cut(s)	93, 317, 375, 376
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	262
TaiI	ACGT	1 cut(s)	629
TaqI	TCGA	2 cut(s)	133, 232
TasI	AATT	8 cut(s)	304, 365, 559, 652, 706, 713, 733, 769
TatI	WGTACW	2 cut(s)	422, 737
TfiI	GAWTC	3 cut(s)	254, 432, 467
Tru1I	TTAA	5 cut(s)	326, 369, 504, 546, 629
Tru9I	TTAA	5 cut(s)	326, 369, 504, 546, 629
TseFI	GTSAC	1 cut(s)	30
Tsp45I	GTSAC	1 cut(s)	30
TspDTI	ATGAA	3 cut(s)	17, 424, 552
TspGWI	ACGGA	1 cut(s)	191
TspMI	CCCGGG	1 cut(s)	376
Vha464I	CTTAAG	1 cut(s)	325
VpaK11BI	GGWCC	2 cut(s)	171, 572
XapI	RAATTY	4 cut(s)	365, 559, 652, 706
XbaI	TCTAGA	1 cut(s)	470
XceI	RCATGY	1 cut(s)	119
XhoI	CTCGAG	1 cut(s)	231
XmaI	CCCGGG	1 cut(s)	376
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.