pycom09g02430

serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
1830883 .. 1831917
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g02430.1

Sequence Viewer

Length: 1035 bp
ATGCTGTTTTCCATCTTCGTTTCGTATGCAGTAGCAGTCCTGTTGTGCTTATCTCACCCATTTTGCTGTGCTAGAGATACAATAACAGACGGCACTCCAATTACCGACGGTATTGAATCAGAAACTCTTGTTTCATCTGGAGGAAGATTTGAACTTGGATTCTTTAGCCCTTCACCTAAAGGGACTAAAAGATATGTAGGCATATGGTATCACCAACTAAGTCCGAGGACAGTGGTATGGGTTGCCAACAGACAAACCCCACTTGTCAATTCCACTAGTACTGGAAGTCTTGCACTCCAAGATGGTAACCTCCATGTGTTGGATACTAATGGAACGAGTTACTGGTCAACAACGGCTGAAACCTCCAAGTCTTTAACGCAGACTGCGACGCTCATGGATTCCGGGAACCTTGTTCTAAGCAGTGGCGATGATCAGTTGGCAGTGAAAATTCTGTGGCAGAGCTTTCAAAGTCCAACTGATACATTTATTCCTGGGATGACAATGGATAACAACTTGGAGTTGACTTCGTGGAGAGGCGAAGATGACCCGGGAAGCGGGAATTTTATCTTCAGACAAGATCAATTTGGAGAGAACCAGTATGTCATCTCAAAATCAGAAGCGATTCTGTACTGGAAAGGCGGAGAAAGGGCAACTGATACATTTTACAGCTTTGATCAAATGCTTCCTGCAGTTACTTACTTCTTATCAAATTTCAGCAAGAAATATGTTGTTCGAAATTCCACCAACATTTTCAATTCTCCGAGTCAAAACTCTTCTTATGAAAGTATAGCAATTCCGCAACAATCAGAATACAAATACACAAGGTTGGTGATTAATATTACTGGAAAGATACAGTTTTGGGCGTGGATTAATTCCACAAAGCAGTGGAATTTGTATTGGTCTGCGCCAAGAGATGAATGTAGTGTGTTTAATGCTTGCGGCAACTTTGGCAGCTGCAATAGTAATAATAGGCCGCTGCTGTGCAAATGTTTGCCAGGTTTCAAGCCGATGGATCTACAGCAGTGGAATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

345

Amino Acids

38.56

Weight (kDa)

5.46

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 77 - 173 2.6e-26 D-mannose binding lectin
S_locus_glycop PF00954 248 - 337 1.1e-21 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230
fragaria_vesca FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44244 FvH4_6g44245 FvH4_6g44245 FvH4_6g44260
malus_domestica MD04G1084700.v1.1 MD09G1099700.v1.1 MD09G1099800.v1.1 MD09G1099900.v1.1 MD09G1100000.v1.1 MD09G1100100.v1.1 MD17G1087900.v1.1
prunus_persica Prupe.3G226000_v2.0.a1 Prupe.3G226200_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226600_v2.0.a1 Prupe.3G226700_v2.0.a1
pyrus_communis pycom02g23070 pycom07g15320 pycom09g02310 pycom09g02330 pycom09g02340 pycom09g02350 pycom09g02360 pycom09g02400 pycom09g02410 pycom09g02430 pycom10g07020 pycom17g08490
rosa_chinensis RchiOBHm_Chr1g0328701 RchiOBHm_Chr2g0161021 RchiOBHm_Chr2g0161031 RchiOBHm_Chr2g0161081 RchiOBHm_Chr2g0161101
rosa_laevigata RLG00000021249 RLG00000021250 RLG00000021251 RLG00000021253 RLG00000021257 RLG00000029922
rosa_multiflora Rmu_sc0000955.1_g000023 Rmu_sc0000955.1_g000025 Rmu_sc0000955.1_g000041 Rmu_sc0002312.1_g000012 Rmu_sc0002481.1_g000021 Rmu_sc0002481.1_g000026 Rmu_sc0002481.1_g000028 Rmu_sc0002481.1_g000039 Rmu_sc0006420.1_g000017
rosa_roxburghii Rroxscaffold_2G00089160 Rroxscaffold_2G00089200 Rroxscaffold_2G00089220 Rroxscaffold_2G00089270 Rroxscaffold_2G00089300 Rroxscaffold_4G00321430
rosa_rugosa Rorug02G0485900 Rorug02G0486100 Rorug03G0345100
rosa_samantha Rh1AG094100 Rh1DG097200 Rh2AG552000 Rh2AG552100 Rh2AG552200 Rh2AG552300 Rh2AG552500 Rh2BG566400 Rh2BG566500 Rh2CG535800 Rh2CG535900 Rh2CG536100 Rh2CG536200 Rh2DG575000 Rh2DG575100 Rh2DG575400 Rh2DG575500 Rh2DG575600 Rh4AG077200 Rh4CG082400
rosa_wichuraiana Rw2G045690 Rw2G045700 Rw2G045710 Rw4G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 319
AciI CCGC 5 cut(s) 555, 639, 797, 939, 974
AclWI GGATC 1 cut(s) 1020
AcsI RAATTY 6 cut(s) 447, 559, 709, 736, 889, 1027
AcuI CTGAAG 1 cut(s) 553
AfaI GTAC 2 cut(s) 280, 629
AfiI CCNNNNNNNGG 2 cut(s) 319, 554
AgsI TTSAA 5 cut(s) 116, 152, 467, 754, 1003
AhlI ACTAGT 1 cut(s) 275
AjnI CCWGG 2 cut(s) 490, 994
AluBI AGCT 3 cut(s) 462, 669, 954
AluI AGCT 3 cut(s) 462, 669, 954
AlwI GGATC 1 cut(s) 1020
Ama87I CYCGRG 1 cut(s) 547
AoxI GGCC 1 cut(s) 971
ApeKI GCWGC 3 cut(s) 951, 954, 976
ApoI RAATTY 6 cut(s) 447, 559, 709, 736, 889, 1027
AseI ATTAAT 2 cut(s) 834, 870
Asp700I GAANNNNTTC 1 cut(s) 621
AspLEI GCGC 1 cut(s) 907
AsuC2I CCSGG 3 cut(s) 403, 548, 549
AsuHPI GGTGA 4 cut(s) 47, 165, 203, 841
AsuII TTCGAA 1 cut(s) 733
AvaI CYCGRG 1 cut(s) 547
BbvI GCAGC 3 cut(s) 941, 963, 963
BccI CCATC 3 cut(s) 20, 296, 1003
BceAI ACGGC 2 cut(s) 106, 369
BciT130I CCWGG 2 cut(s) 492, 996
BciVI GTATCC 1 cut(s) 316
BclI TGATCA 2 cut(s) 430, 673
BcnI CCSGG 3 cut(s) 403, 548, 549
BcuI ACTAGT 1 cut(s) 275
BfaI CTAG 2 cut(s) 72, 276
BfmI CTRYAG 2 cut(s) 687, 1016
BfuI GTATCC 1 cut(s) 316
BisI GCNGC 5 cut(s) 940, 952, 955, 974, 977
BlsI GCNGC 5 cut(s) 941, 953, 956, 975, 978
BmcAI AGTACT 1 cut(s) 280
Bme1390I CCNGG 5 cut(s) 403, 492, 548, 549, 996
BmeT110I CYCGRG 1 cut(s) 547
BmiI GGNNCC 1 cut(s) 407
BmrFI CCNGG 5 cut(s) 403, 492, 548, 549, 996
BpmI CTGGAG 1 cut(s) 159
Bpu14I TTCGAA 1 cut(s) 733
BpuMI CCSGG 3 cut(s) 403, 548, 549
BsaJI CCNNGG 3 cut(s) 224, 491, 547
Bsc4I CCNNNNNNNGG 2 cut(s) 319, 554
Bse1I ACTGG 5 cut(s) 286, 347, 595, 635, 847
BseBI CCWGG 2 cut(s) 492, 996
BseDI CCNNGG 3 cut(s) 224, 491, 547
BseGI GGATG 1 cut(s) 501
BseLI CCNNNNNNNGG 2 cut(s) 319, 554
BseNI ACTGG 5 cut(s) 286, 347, 595, 635, 847
BseXI GCAGC 3 cut(s) 941, 963, 963
BshFI GGCC 1 cut(s) 973
BsiHKCI CYCGRG 1 cut(s) 547
BsiSI CCGG 2 cut(s) 402, 548
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 2 cut(s) 319, 554
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 1 cut(s) 973
BsoBI CYCGRG 1 cut(s) 547
Bsp119I TTCGAA 1 cut(s) 733
Bsp143I GATC 4 cut(s) 430, 577, 673, 1012
BspACI CCGC 5 cut(s) 555, 639, 797, 939, 974
BspANI GGCC 1 cut(s) 973
BspLI GGNNCC 1 cut(s) 407
BspMAI CTGCAG 1 cut(s) 691
BspPI GGATC 1 cut(s) 1020
BspT104I TTCGAA 1 cut(s) 733
BsrI ACTGG 5 cut(s) 286, 347, 595, 635, 847
BssECI CCNNGG 3 cut(s) 224, 491, 547
BssMI GATC 4 cut(s) 430, 577, 673, 1012
Bst2UI CCWGG 2 cut(s) 492, 996
Bst4CI ACNGT 3 cut(s) 110, 232, 855
Bst6I CTCTTC 1 cut(s) 778
BstBI TTCGAA 1 cut(s) 733
BstC8I GCNNGC 1 cut(s) 937
BstDEI CTNAG 2 cut(s) 218, 416
BstEII GGTNACC 1 cut(s) 305
BstF5I GGATG 1 cut(s) 501
BstHHI GCGC 1 cut(s) 907
BstKTI GATC 4 cut(s) 433, 580, 676, 1015
BstMBI GATC 4 cut(s) 430, 577, 673, 1012
BstMWI GCNNNNNNNGC 1 cut(s) 948
BstNI CCWGG 2 cut(s) 492, 996
BstPI GGTNACC 1 cut(s) 305
BstSCI CCNGG 5 cut(s) 401, 490, 546, 547, 994
BstSFI CTRYAG 2 cut(s) 687, 1016
BstV1I GCAGC 3 cut(s) 941, 963, 963
BstX2I RGATCY 1 cut(s) 1012
BstYI RGATCY 1 cut(s) 1012
BsuI GTATCC 1 cut(s) 316
BsuRI GGCC 1 cut(s) 973
BtgZI GCGATG 1 cut(s) 441
BtsCI GGATG 1 cut(s) 501
BtsI GCAGTG 4 cut(s) 427, 447, 890, 1028
BtsIMutI CAGTG 5 cut(s) 237, 427, 447, 890, 1028
Cac8I GCNNGC 1 cut(s) 937
CfoI GCGC 1 cut(s) 907
Cfr9I CCCGGG 1 cut(s) 547
CseI GACGC 1 cut(s) 397
Csp6I GTAC 2 cut(s) 279, 628
CviAII CATG 2 cut(s) 314, 394
CviJI RGCY 7 cut(s) 168, 356, 462, 669, 954, 973, 1006
CviKI_1 RGCY 7 cut(s) 168, 356, 462, 669, 954, 973, 1006
CviQI GTAC 2 cut(s) 279, 628
DdeI CTNAG 2 cut(s) 218, 416
DpnI GATC 4 cut(s) 432, 579, 675, 1014
DpnII GATC 4 cut(s) 430, 577, 673, 1012
Eam1104I CTCTTC 1 cut(s) 778
EarI CTCTTC 1 cut(s) 778
EciI GGCGGA 1 cut(s) 654
Eco57I CTGAAG 1 cut(s) 553
Eco88I CYCGRG 1 cut(s) 547
Eco91I GGTNACC 1 cut(s) 305
EcoO65I GGTNACC 1 cut(s) 305
EcoRI GAATTC 1 cut(s) 1027
EcoRII CCWGG 2 cut(s) 490, 994
FaeI CATG 2 cut(s) 317, 397
FaqI GGGAC 1 cut(s) 196
FatI CATG 2 cut(s) 313, 393
FauI CCCGC 1 cut(s) 548
FauNDI CATATG 1 cut(s) 203
FbaI TGATCA 2 cut(s) 430, 673
Fnu4HI GCNGC 5 cut(s) 940, 952, 955, 974, 977
FokI GGATG 1 cut(s) 508
Fsp4HI GCNGC 5 cut(s) 940, 952, 955, 974, 977
FspBI CTAG 2 cut(s) 72, 276
GlaI GCGC 1 cut(s) 906
GluI GCNGC 5 cut(s) 940, 952, 955, 974, 977
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 1 cut(s) 973
HapII CCGG 2 cut(s) 402, 548
HgaI GACGC 1 cut(s) 397
HhaI GCGC 1 cut(s) 907
Hin1II CATG 2 cut(s) 317, 397
Hin6I GCGC 1 cut(s) 905
HinP1I GCGC 1 cut(s) 905
HincII GTYRAC 2 cut(s) 348, 522
HindII GTYRAC 2 cut(s) 348, 522
HinfI GANTC 5 cut(s) 116, 159, 398, 622, 763
HpaII CCGG 2 cut(s) 402, 548
HphI GGTGA 4 cut(s) 47, 165, 203, 841
Hpy166II GTNNAC 2 cut(s) 348, 522
Hpy188I TCNGA 6 cut(s) 121, 225, 572, 616, 762, 808
Hpy188III TCNNGA 2 cut(s) 138, 1032
Hpy8I GTNNAC 2 cut(s) 348, 522
Hpy99I CGWCG 2 cut(s) 110, 391
HpyAV CCTTC 1 cut(s) 180
HpyCH4III ACNGT 3 cut(s) 110, 232, 855
HpyCH4V TGCA 5 cut(s) 29, 293, 689, 957, 984
HpyF10VI GCNNNNNNNGC 1 cut(s) 948
HpyF3I CTNAG 2 cut(s) 218, 416
Hsp92II CATG 2 cut(s) 317, 397
HspAI GCGC 1 cut(s) 905
Ksp22I TGATCA 2 cut(s) 430, 673
Kzo9I GATC 4 cut(s) 430, 577, 673, 1012
Lsp1109I GCAGC 3 cut(s) 941, 963, 963
MaeI CTAG 2 cut(s) 72, 276
MaeIII GTNAC 3 cut(s) 305, 338, 691
MalI GATC 4 cut(s) 432, 579, 675, 1014
MboI GATC 4 cut(s) 430, 577, 673, 1012
MboII GAAGA 5 cut(s) 7, 156, 551, 559, 765
MflI RGATCY 1 cut(s) 1012
MlyI GAGTC 1 cut(s) 772
MmeI TCCRAC 2 cut(s) 300, 497
MnlI CCTC 5 cut(s) 134, 219, 320, 373, 527
MroXI GAANNNNTTC 1 cut(s) 621
MseI TTAA 4 cut(s) 374, 834, 870, 930
MspA1I CMGCKG 2 cut(s) 954, 976
MspI CCGG 2 cut(s) 402, 548
MspR9I CCNGG 5 cut(s) 403, 492, 548, 549, 996
MvaI CCWGG 2 cut(s) 492, 996
MwoI GCNNNNNNNGC 1 cut(s) 948
NciI CCSGG 3 cut(s) 403, 548, 549
NdeI CATATG 1 cut(s) 203
NdeII GATC 4 cut(s) 430, 577, 673, 1012
NlaIII CATG 2 cut(s) 317, 397
NlaIV GGNNCC 1 cut(s) 407
NspV TTCGAA 1 cut(s) 733
PcsI WCGNNNNNNNCGW 1 cut(s) 383
PdmI GAANNNNTTC 1 cut(s) 621
PfeI GAWTC 4 cut(s) 116, 159, 398, 622
PflMI CCANNNNNTGG 1 cut(s) 319
PfoI TCCNGGA 1 cut(s) 401
PkrI GCNGC 5 cut(s) 941, 953, 956, 975, 978
PleI GAGTC 1 cut(s) 771
PpsI GAGTC 1 cut(s) 771
PshBI ATTAAT 2 cut(s) 834, 870
Psp6I CCWGG 2 cut(s) 490, 994
PspEI GGTNACC 1 cut(s) 305
PspGI CCWGG 2 cut(s) 490, 994
PspN4I GGNNCC 1 cut(s) 407
PstI CTGCAG 1 cut(s) 691
PsuI RGATCY 1 cut(s) 1012
PvuII CAGCTG 1 cut(s) 954
RsaI GTAC 2 cut(s) 280, 629
RsaNI GTAC 2 cut(s) 279, 628
SaqAI TTAA 4 cut(s) 374, 834, 870, 930
SatI GCNGC 5 cut(s) 940, 952, 955, 974, 977
Sau3AI GATC 4 cut(s) 430, 577, 673, 1012
ScaI AGTACT 1 cut(s) 280
SchI GAGTC 1 cut(s) 772
ScrFI CCNGG 5 cut(s) 403, 492, 548, 549, 996
SetI ASST 9 cut(s) 178, 312, 365, 411, 464, 671, 827, 956, 1000
SfcI CTRYAG 2 cut(s) 687, 1016
SfuI TTCGAA 1 cut(s) 733
SmaI CCCGGG 1 cut(s) 549
SpeI ACTAGT 1 cut(s) 275
SsiI CCGC 5 cut(s) 555, 639, 797, 939, 974
SspI AATATT 1 cut(s) 838
SspMI CTAG 2 cut(s) 72, 276
StyD4I CCNGG 5 cut(s) 401, 490, 546, 547, 994
TaaI ACNGT 3 cut(s) 110, 232, 855
TaqI TCGA 1 cut(s) 733
TatI WGTACW 2 cut(s) 278, 627
TauI GCSGC 2 cut(s) 942, 976
TfiI GAWTC 4 cut(s) 116, 159, 398, 622
Tru1I TTAA 4 cut(s) 374, 834, 870, 930
Tru9I TTAA 4 cut(s) 374, 834, 870, 930
TscAI CASTG 5 cut(s) 237, 427, 447, 890, 1028
TseI GCWGC 3 cut(s) 951, 954, 976
TspDTI ATGAA 3 cut(s) 123, 795, 930
TspMI CCCGGG 1 cut(s) 547
TspRI CASTG 5 cut(s) 237, 427, 447, 890, 1028
Van91I CCANNNNNTGG 1 cut(s) 319
VspI ATTAAT 2 cut(s) 834, 870
XapI RAATTY 6 cut(s) 447, 559, 709, 736, 889, 1027
XmaI CCCGGG 1 cut(s) 547
XmnI GAANNNNTTC 1 cut(s) 621
XspI CTAG 2 cut(s) 72, 276
ZrmI AGTACT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.