RLG00000021250

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000412
Physical Location & Seq
Reverse (-)
73364066 .. 73368347
4282 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021250

Sequence Viewer

Length: 3081 bp
ATGGTATCTAACATCTTCCTCTTGTATGTAGCACTATTGCTTTGCAGTTATGATTACCTATTTTGTTCTGCAAGAGATACACTGACACAGGTCGATCCAGTTATTGATGAGGAATCAGGAACTCTTGTTTCAGCAGGAGAAAAATTTGAACTGGGTTTCTTTACCCCTTCTCCTATAGTTAAAAGTAACTCGGGCGCTGATAGCAGATATGTTGGCATGTGGTATCATAAGGTTACTCCAAGAACAGTTGTATGGGTTGCCAACAGGGATAAACCTCTACCTGCCAATTCCACTGGAGTTCTCACAATCGAAGATGGTAACCTCCGCGTGTTGGATAATGCTACTGGAGAGCGTTATTGGTCCACAGACATTGGAAAATCTTCGTCTTCTAACATGATTGTGAAGATAATGGAGTCTGGGAACCTGGTGTTAATGGATTCTGATCAGATGGCAGCGAATATTCTGTGGCAGAGCTTTCAAAACCCAACTGATACATTCATTCCTGGGATGCTAATGGATAAAAACTTTCAGTTGACTTCTTGGAGAGACAAAGATGACCCAAGACCAGGGAACTTCACCTTCAAACTCGATCAGAATGAGAAACAGTATATCATAATGAAGAAATCGCTTCCGTACTGGAAAAGTGGAGAGCCAGGTAATCATTTCAGCTCAGATGAAATGCGTCCTGAAGGAGATTACTTGCTATCAAATTTCAGCAGCAGCAGTCGATCATCTCGTTATAATGTTAGAATTGTGCGACGTTTGTATTACAATTATACACGGTTGGTGATAAATTTTACTGGAGAGTTACAGTTTTGGACTTGGAATGAAAACAAGAAGCAGTGGCTCCTTTCGTGGTCGGAGCCAAAAGATCAGTGTAGTGAGTTTAACCCTTGTGGAAGTTTTGGCAGCTGCAATAATAATAATTGGCCTTTGGTATGCAAATGTTTGCCTGGTTTCAAGCCCAATTCCCCAGCTAATTGGAATTCTGGAGATTTTTCAGGTGGATGTTATAGAGAGTCATCAATCTCTGACAACAACAGCGCGTTCTTGAGCTTAAAGATGATGAAAGTTGGAGAGGCAGAGTCAACGTTCGATGTGGCCAATGAAACAGAGTGCAGGAAGGCGTGCCTAGAGAAAACCCTGTGCCAGGCTTACTCGTATGCTGTTCTAGCTGAAGACAGAGCTCAAAGGGATACTGCTACTACCAGGAAGTGCTGGACGTGGTTGGAAGATCTAAATAATCTTGTAGAAGAGTATGGCGGTGGCCACAATATCTCTGTTCGAGTTGCCTCGTCTGATATAGAATCTACTGTAAGAGACTGCGAGCCTTGTGGCACAACGACAATACCGTATCCCCTGAGCACCGGACCGGACTGTGGAGACCCCATGTACTTCCGTTTCAACTGCAACACTTTGACAGGCCAGGTTAGCTTCATGGGACTGAAGGACACCTTTCGAGTTATAAGCATCAGACCAAGTACGCGAAAATTTGTACTCCAAGGGTTGCCAGCCAAAAAGGTCGATCATTGTGATTCTAGAAACAGTGCCAAAACTCTGCAGCTCAACCCATCATTCCCATTTAACATAAGTAGTTGGTGCAATGATGACCTTGGAAACTTTAGTTCTGAAGTATTCTCTTCTCGAGTCCTTAATGTAGTAGAGTTGGGTTGGGAGCTACCGCCGGAACCAGCCTGCAATACATCAGTAGACTGCAAGGGTTGGCCAAATTCAACCTGCAATCCAGCAAGAGATGGAATGAAAAGATGCGTTTGCAACAAGAGTTTTCAATGGAATGCCTTTAACTTCAATTGTACTCAAGAAGGTAGTCCTCATGAGCCATCAAACTCTCCATCGCAATCGTCCTTAGGAGAGCATTCAATCAGAAAAGTTTCATTCTATCTGATAATTGTGGCGGTGCTTATAAGCATGATTTTACTGGCATGCATCATTTCTATTTATATATGGAGAAGAAAAATGACCAGAAAACAAGATCAAATAAGTCGTGCACAATTTGATAGTGAAAGACGAGTCAAGGAGTTGATAGACACAAGTGAGTTCAACGAAGGAGATCAAAAAGGTATAGATGTACCCTTTTTTGATTTCCAAAGCATACTCGAAGCTACAGATAATTTCTCGGATGCTAACAAGCTAGGACAAGGGGGATATGGGCCTGTTTACAAGGGGAAGTTTTTTGGAGGTCAAGAAATTGCAGTAAAGAGGCTATCAAAGGTTTCAGGACAAGGGTTACAGGAATTTAGGAATGAGGTTGTGCTGATTGCCAAACTTCAGCACCGAAATCTTGTTAGACTCAGAGGATATTGCATGAAAGGAGGAGAAAAGATTTTACTTTATGAGTACATGCCCAACAAAAGCTTGGATTCCTTTATATTTGATCATACACAAGACGTATTTCTCAATTGGGAGAAGCGGTTTAACATCATTTTGGGAATCGCTCGAGGACTTCTTTATCTTCATCAAGATTCAAGGTTGAGGATTATTCATAGAGATTTGAAAACCAGCAACGTACTTTTGGATGAGGAGATGAACCCCAAAATATCTGACTTCGGCTTGGCCAGGATTGTTGGAGGCAAAGAAACAGAGGCAAACACAAATACAGTAGTAGGAACCTATGGCTACATGTCTCCGGAATATGCATTAGATGGAACTTTCTCAGTCAAATCAGATGTCTTTAGTTTTGGTGTGGTTCTTCTTGAGATAATCAGTGGAAAAAAGAATGCAGGATATTTTCAGTCCAAACAAACTTTCAGCCTCCTTGGTTATGCATGGGAACTCTGGACAGAAGACAAGGTGTTGGATTTAATGGACAAGAATTTGGAAGAAAGTTGTAACAGAAGTGAATTTATAAAGTGTGTAACTGTTGGGCTCTTATGCGTTCAAGAAGATCCGGTTGATCGTCCTACAATGTCACATGTTATAACCTTGCTTGACGGTGAAACTGCAATCCCTGCAACTCCTAAACAACCAGCCTTTTTCATAAGGAGAGGCAACTCTACCACAGCTTCCTCTTCTACTAAGCCAGAAACAATTTCTGAAATAAGTACTCTGGAAGGCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

1027

Amino Acids

115.79

Weight (kDa)

5.81

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 82 - 177 1.6e-26 D-mannose binding lectin
S_locus_glycop PF00954 213 - 323 2.6e-20 S-locus glycoprotein domain
PAN_2 PF08276 345 - 415 2.6e-08 PAN-like domain
Pkinase PF00069 713 - 980 6e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 716 - 981 2.8e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230
fragaria_vesca FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44244 FvH4_6g44245 FvH4_6g44245 FvH4_6g44260
malus_domestica MD04G1084700.v1.1 MD09G1099700.v1.1 MD09G1099800.v1.1 MD09G1099900.v1.1 MD09G1100000.v1.1 MD09G1100100.v1.1 MD17G1087900.v1.1
prunus_persica Prupe.3G226000_v2.0.a1 Prupe.3G226200_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226600_v2.0.a1 Prupe.3G226700_v2.0.a1
pyrus_communis pycom02g23070 pycom07g15320 pycom09g02310 pycom09g02330 pycom09g02340 pycom09g02350 pycom09g02360 pycom09g02400 pycom09g02410 pycom09g02430 pycom10g07020 pycom17g08490
rosa_chinensis RchiOBHm_Chr1g0328701 RchiOBHm_Chr2g0161021 RchiOBHm_Chr2g0161031 RchiOBHm_Chr2g0161081 RchiOBHm_Chr2g0161101
rosa_laevigata RLG00000021249 RLG00000021250 RLG00000021251 RLG00000021253 RLG00000021257 RLG00000029922
rosa_multiflora Rmu_sc0000955.1_g000023 Rmu_sc0000955.1_g000025 Rmu_sc0000955.1_g000041 Rmu_sc0002312.1_g000012 Rmu_sc0002481.1_g000021 Rmu_sc0002481.1_g000026 Rmu_sc0002481.1_g000028 Rmu_sc0002481.1_g000039 Rmu_sc0006420.1_g000017
rosa_roxburghii Rroxscaffold_2G00089160 Rroxscaffold_2G00089200 Rroxscaffold_2G00089220 Rroxscaffold_2G00089270 Rroxscaffold_2G00089300 Rroxscaffold_4G00321430
rosa_rugosa Rorug02G0485900 Rorug02G0486100 Rorug03G0345100
rosa_samantha Rh1AG094100 Rh1DG097200 Rh2AG552000 Rh2AG552100 Rh2AG552200 Rh2AG552300 Rh2AG552500 Rh2BG566400 Rh2BG566500 Rh2CG535800 Rh2CG535900 Rh2CG536100 Rh2CG536200 Rh2DG575000 Rh2DG575100 Rh2DG575400 Rh2DG575500 Rh2DG575600 Rh4AG077200 Rh4CG082400
rosa_wichuraiana Rw2G045690 Rw2G045700 Rw2G045710 Rw4G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 5 cut(s) 741, 1466, 1925, 2867, 2939
Acc36I ACCTGC 2 cut(s) 289, 1745
AccI GTMKAC 1 cut(s) 1710
AccII CGCG 3 cut(s) 327, 1046, 1486
AccIII TCCGGA 1 cut(s) 2647
AciI CCGC 5 cut(s) 325, 1263, 1682, 1916, 2431
AclI AACGTT 1 cut(s) 1091
AclWI GGATC 2 cut(s) 89, 2900
AcoI YGGCCR 4 cut(s) 1101, 1267, 1724, 2574
AcsI RAATTY 9 cut(s) 143, 709, 793, 985, 1490, 1729, 2255, 2833, 2861
AcuI CTGAAG 5 cut(s) 708, 1197, 1466, 1650, 2273
AfaI GTAC 9 cut(s) 635, 1394, 1483, 1497, 1816, 2091, 2360, 2529, 3064
AfiI CCNNNNNNNGG 4 cut(s) 331, 566, 1150, 1379
AflIII ACRYGT 2 cut(s) 2640, 2932
AjiI CACGTC 1 cut(s) 1224
AjnI CCWGG 9 cut(s) 423, 502, 565, 652, 952, 1149, 1208, 1425, 2576
AjuI GAANNNNNNNTTGG 2 cut(s) 2750, 2782
Alw21I GWGCWC 3 cut(s) 1189, 1367, 2011
Alw26I GTCTC 4 cut(s) 540, 1314, 1377, 2649
Alw44I GTGCAC 1 cut(s) 2007
AlwI GGATC 2 cut(s) 89, 2900
Ama87I CYCGRG 3 cut(s) 190, 1644, 2457
Aor13HI TCCGGA 1 cut(s) 2647
AoxI GGCC 7 cut(s) 929, 1101, 1267, 1423, 1724, 2171, 2574
ApaLI GTGCAC 1 cut(s) 2007
ApeKI GCWGC 6 cut(s) 452, 717, 720, 909, 912, 1561
ApoI RAATTY 9 cut(s) 143, 709, 793, 985, 1490, 1729, 2255, 2833, 2861
ArsI GACNNNNNNTTYG 2 cut(s) 2673, 2705
Asp700I GAANNNNTTC 2 cut(s) 379, 1891
AspLEI GCGC 2 cut(s) 197, 1046
AspS9I GGNCC 3 cut(s) 360, 1370, 2171
AsuHPI GGTGA 3 cut(s) 568, 799, 2966
AvaI CYCGRG 3 cut(s) 190, 1644, 2457
AvaII GGWCC 2 cut(s) 360, 1370
AxyI CCTNAGG 1 cut(s) 1867
BaeGI GKGCMC 1 cut(s) 2011
BalI TGGCCA 4 cut(s) 1103, 1269, 1726, 2576
BanII GRGCYC 2 cut(s) 1189, 2889
BbsI GAAGAC 3 cut(s) 378, 1185, 2811
Bbv12I GWGCWC 3 cut(s) 1189, 1367, 2011
BbvI GCAGC 6 cut(s) 464, 729, 732, 899, 921, 1573
BccI CCATC 7 cut(s) 308, 442, 1579, 1748, 1849, 1861, 2657
BciT130I CCWGG 9 cut(s) 425, 504, 567, 654, 954, 1151, 1210, 1427, 2578
BciVI GTATCC 2 cut(s) 1189, 1365
BclI TGATCA 2 cut(s) 442, 2395
BcoDI GTCTC 4 cut(s) 540, 1314, 1377, 2649
BfaI CTAG 4 cut(s) 1133, 1172, 1539, 2153
BfmI CTRYAG 3 cut(s) 174, 1559, 2124
BfoI RGCGCY 1 cut(s) 198
BfuAI ACCTGC 2 cut(s) 289, 1745
BfuI GTATCC 2 cut(s) 1189, 1365
BglII AGATCT 1 cut(s) 1234
BisI GCNGC 6 cut(s) 453, 718, 721, 910, 913, 1562
BlsI GCNGC 6 cut(s) 454, 719, 722, 911, 914, 1563
BmcAI AGTACT 1 cut(s) 3064
Bme1390I CCNGG 9 cut(s) 425, 504, 567, 654, 954, 1151, 1210, 1427, 2578
Bme18I GGWCC 2 cut(s) 360, 1370
BmeT110I CYCGRG 3 cut(s) 190, 1644, 2457
BmgBI CACGTC 1 cut(s) 1224
BmgT120I GGNCC 3 cut(s) 360, 1370, 2171
BmiI GGNNCC 5 cut(s) 422, 848, 864, 1689, 2629
BmrFI CCNGG 9 cut(s) 425, 504, 567, 654, 954, 1151, 1210, 1427, 2578
BmrI ACTGGG 1 cut(s) 161
BmsI GCATC 5 cut(s) 498, 1479, 1757, 1956, 2131
BmuI ACTGGG 1 cut(s) 161
BoxI GACNNNNGTC 1 cut(s) 89
BpiI GAAGAC 3 cut(s) 378, 1185, 2811
BpmI CTGGAG 4 cut(s) 315, 366, 822, 1011
Bpu10I CCTNAGC 1 cut(s) 1361
BpuEI CTTGAG 3 cut(s) 1072, 1803, 2735
BsaBI GATNNNNATC 1 cut(s) 441
BsaI GGTCTC 1 cut(s) 1377
BsaJI CCNNGG 5 cut(s) 503, 566, 1501, 1612, 2776
BsaWI WCCGGW 4 cut(s) 1367, 1372, 2647, 2908
BsaXI ACNNNNNCTCC 4 cut(s) 154, 184, 2417, 2447
Bsc4I CCNNNNNNNGG 4 cut(s) 331, 566, 1150, 1379
Bse1I ACTGG 7 cut(s) 98, 156, 298, 349, 641, 805, 1944
Bse21I CCTNAGG 1 cut(s) 1867
Bse3DI GCAATG 1 cut(s) 1609
Bse8I GATNNNNATC 1 cut(s) 441
BseAI TCCGGA 1 cut(s) 2647
BseBI CCWGG 9 cut(s) 425, 504, 567, 654, 954, 1151, 1210, 1427, 2578
BseDI CCNNGG 5 cut(s) 503, 566, 1501, 1612, 2776
BseGI GGATG 4 cut(s) 513, 1013, 2146, 2542
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 4 cut(s) 331, 566, 1150, 1379
BseMI GCAATG 1 cut(s) 1609
BseMII CTCAG 4 cut(s) 684, 1352, 2326, 2688
BseNI ACTGG 7 cut(s) 98, 156, 298, 349, 641, 805, 1944
BseRI GAGGAG 2 cut(s) 2349, 2555
BseSI GKGCMC 1 cut(s) 2011
BseXI GCAGC 6 cut(s) 464, 729, 732, 899, 921, 1573
BseYI CCCAGC 1 cut(s) 973
BsgI GTGCAG 1 cut(s) 1138
Bsh1236I CGCG 3 cut(s) 327, 1046, 1486
BshFI GGCC 7 cut(s) 931, 1103, 1269, 1425, 1726, 2173, 2576
BsiHKAI GWGCWC 3 cut(s) 1189, 1367, 2011
BsiHKCI CYCGRG 3 cut(s) 190, 1644, 2457
BsiSI CCGG 5 cut(s) 1368, 1373, 1685, 2648, 2909
BslFI GGGAC 1 cut(s) 1455
BslI CCNNNNNNNGG 4 cut(s) 331, 566, 1150, 1379
BsmAI GTCTC 4 cut(s) 540, 1314, 1377, 2649
BsmFI GGGAC 1 cut(s) 1455
BsmI GAATGC 3 cut(s) 1801, 1876, 2743
BsnI GGCC 7 cut(s) 931, 1103, 1269, 1425, 1726, 2173, 2576
Bso31I GGTCTC 1 cut(s) 1377
BsoBI CYCGRG 3 cut(s) 190, 1644, 2457
Bsp1286I GDGCHC 4 cut(s) 1189, 1367, 2011, 2889
Bsp13I TCCGGA 1 cut(s) 2647
BspACI CCGC 5 cut(s) 325, 1263, 1682, 1916, 2431
BspANI GGCC 7 cut(s) 931, 1103, 1269, 1425, 1726, 2173, 2576
BspCNI CTCAG 4 cut(s) 683, 1353, 2325, 2687
BspEI TCCGGA 1 cut(s) 2647
BspFNI CGCG 3 cut(s) 327, 1046, 1486
BspHI TCATGA 1 cut(s) 1834
BspLI GGNNCC 5 cut(s) 422, 848, 864, 1689, 2629
BspMAI CTGCAG 1 cut(s) 1563
BspMI ACCTGC 2 cut(s) 289, 1745
BspPI GGATC 2 cut(s) 89, 2900
BspTNI GGTCTC 1 cut(s) 1377
BsrDI GCAATG 1 cut(s) 1609
BsrI ACTGG 7 cut(s) 98, 156, 298, 349, 641, 805, 1944
BssECI CCNNGG 5 cut(s) 503, 566, 1501, 1612, 2776
BssT1I CCWWGG 3 cut(s) 1501, 1612, 2776
Bst2UI CCWGG 9 cut(s) 425, 504, 567, 654, 954, 1151, 1210, 1427, 2578
Bst6I CTCTTC 3 cut(s) 1248, 1645, 3034
BstAPI GCANNNNNTGC 1 cut(s) 2969
BstC8I GCNNGC 5 cut(s) 1129, 1328, 1512, 1696, 1945
BstDEI CTNAG 6 cut(s) 670, 1361, 1867, 2312, 2674, 3036
BstEII GGTNACC 1 cut(s) 317
BstENI CCTNNNNNAGG 1 cut(s) 1148
BstF5I GGATG 4 cut(s) 513, 1013, 2146, 2542
BstFNI CGCG 3 cut(s) 327, 1046, 1486
BstH2I RGCGCY 1 cut(s) 198
BstHHI GCGC 2 cut(s) 197, 1046
BstMAI GTCTC 4 cut(s) 540, 1314, 1377, 2649
BstMWI GCNNNNNNNGC 4 cut(s) 201, 1172, 1431, 2969
BstNI CCWGG 9 cut(s) 425, 504, 567, 654, 954, 1151, 1210, 1427, 2578
BstNSI RCATGY 5 cut(s) 220, 1947, 2365, 2644, 2936
BstPAI GACNNNNGTC 1 cut(s) 89
BstPI GGTNACC 1 cut(s) 317
BstSCI CCNGG 9 cut(s) 423, 502, 565, 652, 952, 1149, 1208, 1425, 2576
BstSFI CTRYAG 3 cut(s) 174, 1559, 2124
BstSLI GKGCMC 1 cut(s) 2011
BstUI CGCG 3 cut(s) 327, 1046, 1486
BstV1I GCAGC 6 cut(s) 464, 729, 732, 899, 921, 1573
BstV2I GAAGAC 3 cut(s) 378, 1185, 2811
BstX2I RGATCY 2 cut(s) 1234, 2905
BstXI CCANNNNNNTGG 1 cut(s) 981
BstYI RGATCY 2 cut(s) 1234, 2905
Bsu36I CCTNAGG 1 cut(s) 1867
BsuI GTATCC 2 cut(s) 1189, 1365
BsuRI GGCC 7 cut(s) 931, 1103, 1269, 1425, 1726, 2173, 2576
BtgZI GCGATG 1 cut(s) 1839
BtrI CACGTC 1 cut(s) 1224
BtsCI GGATG 4 cut(s) 513, 1013, 2146, 2542
BtsI GCAGTG 1 cut(s) 848
BtsIMutI CAGTG 6 cut(s) 80, 291, 848, 881, 1552, 2731
BveI ACCTGC 2 cut(s) 289, 1745
Cac8I GCNNGC 5 cut(s) 1129, 1328, 1512, 1696, 1945
CciI TCATGA 1 cut(s) 1834
CfoI GCGC 2 cut(s) 197, 1046
Cfr13I GGNCC 3 cut(s) 360, 1370, 2171
CpoI CGGWCCG 1 cut(s) 1370
CseI GACGC 1 cut(s) 671
CsiI ACCWGGT 1 cut(s) 423
Csp6I GTAC 9 cut(s) 634, 1393, 1482, 1496, 1815, 2090, 2359, 2528, 3063
CspCI CAANNNNNGTGG 2 cut(s) 352, 387
CspI CGGWCCG 1 cut(s) 1370
CviQI GTAC 9 cut(s) 634, 1393, 1482, 1496, 1815, 2090, 2359, 2528, 3063
DdeI CTNAG 6 cut(s) 670, 1361, 1867, 2312, 2674, 3036
EaeI YGGCCR 4 cut(s) 1101, 1267, 1724, 2574
Eam1104I CTCTTC 3 cut(s) 1248, 1645, 3034
EarI CTCTTC 3 cut(s) 1248, 1645, 3034
Ecl136II GAGCTC 1 cut(s) 1187
Eco130I CCWWGG 3 cut(s) 1501, 1612, 2776
Eco24I GRGCYC 2 cut(s) 1189, 2889
Eco31I GGTCTC 1 cut(s) 1377
Eco47I GGWCC 2 cut(s) 360, 1370
Eco53kI GAGCTC 1 cut(s) 1187
Eco57I CTGAAG 5 cut(s) 708, 1197, 1466, 1650, 2273
Eco81I CCTNAGG 1 cut(s) 1867
Eco88I CYCGRG 3 cut(s) 190, 1644, 2457
Eco91I GGTNACC 1 cut(s) 317
EcoICRI GAGCTC 1 cut(s) 1187
EcoNI CCTNNNNNAGG 1 cut(s) 1148
EcoO65I GGTNACC 1 cut(s) 317
EcoRI GAATTC 1 cut(s) 985
EcoRII CCWGG 9 cut(s) 423, 502, 565, 652, 952, 1149, 1208, 1425, 2576
EcoT14I CCWWGG 3 cut(s) 1501, 1612, 2776
EcoT22I ATGCAT 3 cut(s) 1949, 2659, 2788
EcoT38I GRGCYC 2 cut(s) 1189, 2889
ErhI CCWWGG 3 cut(s) 1501, 1612, 2776
FalI AAGNNNNNCTT 2 cut(s) 1439, 1471
FaqI GGGAC 1 cut(s) 1455
FbaI TGATCA 2 cut(s) 442, 2395
FblI GTMKAC 1 cut(s) 1710
Fnu4HI GCNGC 6 cut(s) 453, 718, 721, 910, 913, 1562
FokI GGATG 4 cut(s) 520, 1020, 2153, 2549
FriOI GRGCYC 2 cut(s) 1189, 2889
Fsp4HI GCNGC 6 cut(s) 453, 718, 721, 910, 913, 1562
FspBI CTAG 4 cut(s) 1133, 1172, 1539, 2153
GlaI GCGC 2 cut(s) 196, 1045
GluI GCNGC 6 cut(s) 453, 718, 721, 910, 913, 1562
GsaI CCCAGC 1 cut(s) 977
GsuI CTGGAG 4 cut(s) 315, 366, 822, 1011
HaeII RGCGCY 1 cut(s) 198
HaeIII GGCC 7 cut(s) 931, 1103, 1269, 1425, 1726, 2173, 2576
HapII CCGG 5 cut(s) 1368, 1373, 1685, 2648, 2909
HgaI GACGC 1 cut(s) 671
HhaI GCGC 2 cut(s) 197, 1046
Hin6I GCGC 2 cut(s) 195, 1044
HinP1I GCGC 2 cut(s) 195, 1044
HincII GTYRAC 2 cut(s) 534, 1089
HindII GTYRAC 2 cut(s) 534, 1089
HindIII AAGCTT 1 cut(s) 2374
HpaII CCGG 5 cut(s) 1368, 1373, 1685, 2648, 2909
HphI GGTGA 3 cut(s) 568, 799, 2966
Hpy166II GTNNAC 6 cut(s) 363, 534, 1089, 1711, 2009, 2179
Hpy8I GTNNAC 6 cut(s) 363, 534, 1089, 1711, 2009, 2179
Hpy99I CGWCG 1 cut(s) 762
HpyAV CCTTC 8 cut(s) 177, 589, 683, 1117, 1441, 1817, 2060, 3065
HpyCH4IV ACGT 5 cut(s) 760, 1091, 1223, 2409, 2526
HpyF10VI GCNNNNNNNGC 4 cut(s) 201, 1172, 1431, 2969
HpyF3I CTNAG 6 cut(s) 670, 1361, 1867, 2312, 2674, 3036
HpySE526I ACGT 5 cut(s) 760, 1091, 1223, 2409, 2526
HspAI GCGC 2 cut(s) 195, 1044
Kpn2I TCCGGA 1 cut(s) 2647
Ksp22I TGATCA 2 cut(s) 442, 2395
LmnI GCTCC 3 cut(s) 852, 862, 1675
Lsp1109I GCAGC 6 cut(s) 464, 729, 732, 899, 921, 1573
LweI GCATC 5 cut(s) 498, 1479, 1757, 1956, 2131
MabI ACCWGGT 1 cut(s) 423
MaeI CTAG 4 cut(s) 1133, 1172, 1539, 2153
MaeII ACGT 5 cut(s) 760, 1091, 1223, 2409, 2526
MaeIII GTNAC 8 cut(s) 185, 232, 317, 807, 2247, 2849, 2875, 2928
MfeI CAATTG 2 cut(s) 1810, 2419
MflI RGATCY 2 cut(s) 1234, 2905
MhlI GDGCHC 4 cut(s) 1189, 1367, 2011, 2889
MlsI TGGCCA 4 cut(s) 1103, 1269, 1726, 2576
MluNI TGGCCA 4 cut(s) 1103, 1269, 1726, 2576
MlyI GAGTC 6 cut(s) 422, 1028, 1094, 1656, 2040, 2304
MmeI TCCRAC 6 cut(s) 312, 840, 1054, 1209, 2566, 2796
Mox20I TGGCCA 4 cut(s) 1103, 1269, 1726, 2576
Mph1103I ATGCAT 3 cut(s) 1949, 2659, 2788
MroI TCCGGA 1 cut(s) 2647
MroXI GAANNNNTTC 2 cut(s) 379, 1891
MscI TGGCCA 4 cut(s) 1103, 1269, 1726, 2576
MseI TTAA 9 cut(s) 180, 431, 888, 1058, 1584, 1653, 1803, 2436, 2822
MslI CAYNNNNRTG 1 cut(s) 398
Msp20I TGGCCA 4 cut(s) 1103, 1269, 1726, 2576
MspA1I CMGCKG 1 cut(s) 912
MspI CCGG 5 cut(s) 1368, 1373, 1685, 2648, 2909
MspR9I CCNGG 9 cut(s) 425, 504, 567, 654, 954, 1151, 1210, 1427, 2578
MunI CAATTG 2 cut(s) 1810, 2419
Mva1269I GAATGC 3 cut(s) 1801, 1876, 2743
MvaI CCWGG 9 cut(s) 425, 504, 567, 654, 954, 1151, 1210, 1427, 2578
MvnI CGCG 3 cut(s) 327, 1046, 1486
MwoI GCNNNNNNNGC 4 cut(s) 201, 1172, 1431, 2969
NlaIV GGNNCC 5 cut(s) 422, 848, 864, 1689, 2629
NmuCI GTSAC 1 cut(s) 2928
NsiI ATGCAT 3 cut(s) 1949, 2659, 2788
NspI RCATGY 5 cut(s) 220, 1947, 2365, 2644, 2936
PaeI GCATGC 1 cut(s) 1947
PaeR7I CTCGAG 2 cut(s) 1644, 2457
PagI TCATGA 1 cut(s) 1834
PciI ACATGT 2 cut(s) 2640, 2932
PcsI WCGNNNNNNNCGW 2 cut(s) 733, 1349
PctI GAATGC 3 cut(s) 1801, 1876, 2743
PdmI GAANNNNTTC 2 cut(s) 379, 1891
PfeI GAWTC 7 cut(s) 113, 437, 1307, 1535, 2381, 2451, 2483
PkrI GCNGC 6 cut(s) 454, 719, 722, 911, 914, 1563
PleI GAGTC 6 cut(s) 421, 1027, 1093, 1655, 2039, 2304
PpsI GAGTC 6 cut(s) 421, 1027, 1093, 1655, 2039, 2304
PscI ACATGT 2 cut(s) 2640, 2932
PshAI GACNNNNGTC 1 cut(s) 89
PsiI TTATAA 5 cut(s) 741, 1466, 1925, 2867, 2939
Psp124BI GAGCTC 1 cut(s) 1189
Psp1406I AACGTT 1 cut(s) 1091
Psp6I CCWGG 9 cut(s) 423, 502, 565, 652, 952, 1149, 1208, 1425, 2576
PspEI GGTNACC 1 cut(s) 317
PspFI CCCAGC 1 cut(s) 973
PspGI CCWGG 9 cut(s) 423, 502, 565, 652, 952, 1149, 1208, 1425, 2576
PspN4I GGNNCC 5 cut(s) 422, 848, 864, 1689, 2629
PspPI GGNCC 3 cut(s) 360, 1370, 2171
PspXI VCTCGAGB 1 cut(s) 2457
PstI CTGCAG 1 cut(s) 1563
PsuI RGATCY 2 cut(s) 1234, 2905
PvuII CAGCTG 1 cut(s) 912
RsaI GTAC 9 cut(s) 635, 1394, 1483, 1497, 1816, 2091, 2360, 2529, 3064
RsaNI GTAC 9 cut(s) 634, 1393, 1482, 1496, 1815, 2090, 2359, 2528, 3063
RseI CAYNNNNRTG 1 cut(s) 398
Rsr2I CGGWCCG 1 cut(s) 1370
RsrII CGGWCCG 1 cut(s) 1370
SacI GAGCTC 1 cut(s) 1189
SaqAI TTAA 9 cut(s) 180, 431, 888, 1058, 1584, 1653, 1803, 2436, 2822
SatI GCNGC 6 cut(s) 453, 718, 721, 910, 913, 1562
Sau96I GGNCC 3 cut(s) 360, 1370, 2171
ScaI AGTACT 1 cut(s) 3064
SchI GAGTC 6 cut(s) 422, 1028, 1094, 1656, 2040, 2304
ScrFI CCNGG 9 cut(s) 425, 504, 567, 654, 954, 1151, 1210, 1427, 2578
SduI GDGCHC 4 cut(s) 1189, 1367, 2011, 2889
SexAI ACCWGGT 1 cut(s) 423
SfaNI GCATC 5 cut(s) 498, 1479, 1757, 1956, 2131
SfcI CTRYAG 3 cut(s) 174, 1559, 2124
Sfr274I CTCGAG 2 cut(s) 1644, 2457
SinI GGWCC 2 cut(s) 360, 1370
SlaI CTCGAG 2 cut(s) 1644, 2457
SmiMI CAYNNNNRTG 1 cut(s) 398
SmlI CTYRAG 5 cut(s) 1051, 1644, 1818, 2457, 2714
SmoI CTYRAG 5 cut(s) 1051, 1644, 1818, 2457, 2714
SphI GCATGC 1 cut(s) 1947
SsiI CCGC 5 cut(s) 325, 1263, 1682, 1916, 2431
SspI AATATT 1 cut(s) 460
SspMI CTAG 4 cut(s) 1133, 1172, 1539, 2153
SstI GAGCTC 1 cut(s) 1189
StyD4I CCNGG 9 cut(s) 423, 502, 565, 652, 952, 1149, 1208, 1425, 2576
StyI CCWWGG 3 cut(s) 1501, 1612, 2776
TaiI ACGT 5 cut(s) 763, 1094, 1226, 2412, 2529
TatI WGTACW 5 cut(s) 1392, 1495, 1814, 2358, 3062
TfiI GAWTC 7 cut(s) 113, 437, 1307, 1535, 2381, 2451, 2483
Tru1I TTAA 9 cut(s) 180, 431, 888, 1058, 1584, 1653, 1803, 2436, 2822
Tru9I TTAA 9 cut(s) 180, 431, 888, 1058, 1584, 1653, 1803, 2436, 2822
TscAI CASTG 6 cut(s) 87, 298, 848, 881, 1552, 2731
TseFI GTSAC 1 cut(s) 2928
TseI GCWGC 6 cut(s) 452, 717, 720, 909, 912, 1561
Tsp45I GTSAC 1 cut(s) 2928
TspGWI ACGGA 2 cut(s) 621, 1388
TspRI CASTG 6 cut(s) 87, 298, 848, 881, 1552, 2731
VneI GTGCAC 1 cut(s) 2007
VpaK11BI GGWCC 2 cut(s) 360, 1370
XagI CCTNNNNNAGG 1 cut(s) 1148
XapI RAATTY 9 cut(s) 143, 709, 793, 985, 1490, 1729, 2255, 2833, 2861
XbaI TCTAGA 1 cut(s) 1538
XceI RCATGY 5 cut(s) 220, 1947, 2365, 2644, 2936
XcmI CCANNNNNNNNNTGG 1 cut(s) 2374
XhoI CTCGAG 2 cut(s) 1644, 2457
XmiI GTMKAC 1 cut(s) 1710
XmnI GAANNNNTTC 2 cut(s) 379, 1891
XspI CTAG 4 cut(s) 1133, 1172, 1539, 2153
ZrmI AGTACT 1 cut(s) 3064
Zsp2I ATGCAT 3 cut(s) 1949, 2659, 2788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.