divergent subfamily of APPLE domains
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 545 |
| AccII | CGCG | 1 cut(s) | 306 |
| AciI | CCGC | 3 cut(s) | 304, 434, 1047 |
| AclWI | GGATC | 1 cut(s) | 1081 |
| AcsI | RAATTY | 3 cut(s) | 143, 598, 685 |
| AfaI | GTAC | 1 cut(s) | 33 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 310, 545, 1030 |
| AgsI | TTSAA | 7 cut(s) | 149, 458, 562, 603, 653, 730, 940 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 435 |
| AjnI | CCWGG | 4 cut(s) | 402, 481, 628, 1029 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 319, 351 |
| AluBI | AGCT | 7 cut(s) | 122, 453, 645, 671, 792, 1020, 1064 |
| AluI | AGCT | 7 cut(s) | 122, 453, 645, 671, 792, 1020, 1064 |
| Alw21I | GWGCWC | 2 cut(s) | 47, 740 |
| Alw26I | GTCTC | 3 cut(s) | 855, 867, 891 |
| AlwI | GGATC | 1 cut(s) | 1081 |
| Ama87I | CYCGRG | 1 cut(s) | 660 |
| ApeKI | GCWGC | 2 cut(s) | 789, 1020 |
| ApoI | RAATTY | 3 cut(s) | 143, 598, 685 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 358 |
| AspS9I | GGNCC | 3 cut(s) | 339, 437, 626 |
| AsuC2I | CCSGG | 1 cut(s) | 812 |
| AsuHPI | GGTGA | 2 cut(s) | 434, 547 |
| AsuII | TTCGAA | 1 cut(s) | 1067 |
| AvaI | CYCGRG | 1 cut(s) | 660 |
| AvaII | GGWCC | 3 cut(s) | 339, 437, 626 |
| BbsI | GAAGAC | 1 cut(s) | 357 |
| Bbv12I | GWGCWC | 2 cut(s) | 47, 740 |
| BbvI | GCAGC | 2 cut(s) | 801, 1007 |
| BccI | CCATC | 3 cut(s) | 104, 287, 878 |
| BciT130I | CCWGG | 4 cut(s) | 404, 483, 630, 1031 |
| BciVI | GTATCC | 1 cut(s) | 409 |
| BcnI | CCSGG | 1 cut(s) | 812 |
| BcoDI | GTCTC | 3 cut(s) | 855, 867, 891 |
| BfaI | CTAG | 4 cut(s) | 72, 833, 854, 894 |
| BfuI | GTATCC | 1 cut(s) | 409 |
| BisI | GCNGC | 3 cut(s) | 790, 1021, 1047 |
| BlsI | GCNGC | 3 cut(s) | 791, 1022, 1048 |
| BmcAI | AGTACT | 1 cut(s) | 33 |
| Bme1390I | CCNGG | 5 cut(s) | 404, 483, 630, 812, 1031 |
| Bme18I | GGWCC | 3 cut(s) | 339, 437, 626 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 435 |
| BmeT110I | CYCGRG | 1 cut(s) | 660 |
| BmgT120I | GGNCC | 3 cut(s) | 339, 437, 626 |
| BmiI | GGNNCC | 1 cut(s) | 438 |
| BmrFI | CCNGG | 5 cut(s) | 404, 483, 630, 812, 1031 |
| BmrI | ACTGGG | 2 cut(s) | 161, 555 |
| BmsI | GCATC | 3 cut(s) | 67, 477, 878 |
| BmuI | ACTGGG | 2 cut(s) | 161, 555 |
| BpiI | GAAGAC | 1 cut(s) | 357 |
| Bpu14I | TTCGAA | 1 cut(s) | 1067 |
| BpuEI | CTTGAG | 1 cut(s) | 952 |
| BpuMI | CCSGG | 1 cut(s) | 812 |
| Bsa29I | ATCGAT | 1 cut(s) | 105 |
| BsaJI | CCNNGG | 2 cut(s) | 482, 659 |
| BsaWI | WCCGGW | 1 cut(s) | 620 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 310, 545, 1030 |
| Bse1I | ACTGG | 8 cut(s) | 98, 156, 328, 424, 550, 617, 847, 1024 |
| BseBI | CCWGG | 4 cut(s) | 404, 483, 630, 1031 |
| BseCI | ATCGAT | 1 cut(s) | 105 |
| BseDI | CCNNGG | 2 cut(s) | 482, 659 |
| BseGI | GGATG | 2 cut(s) | 492, 893 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 310, 545, 1030 |
| BseMII | CTCAG | 3 cut(s) | 660, 732, 894 |
| BseNI | ACTGG | 8 cut(s) | 98, 156, 328, 424, 550, 617, 847, 1024 |
| BseRI | GAGGAG | 1 cut(s) | 153 |
| BseXI | GCAGC | 2 cut(s) | 801, 1007 |
| Bsh1236I | CGCG | 1 cut(s) | 306 |
| BshVI | ATCGAT | 1 cut(s) | 105 |
| BsiHKAI | GWGCWC | 2 cut(s) | 47, 740 |
| BsiHKCI | CYCGRG | 1 cut(s) | 660 |
| BsiSI | CCGG | 2 cut(s) | 621, 812 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 310, 545, 1030 |
| BsmAI | GTCTC | 3 cut(s) | 855, 867, 891 |
| BsmI | GAATGC | 1 cut(s) | 1001 |
| BsoBI | CYCGRG | 1 cut(s) | 660 |
| Bsp119I | TTCGAA | 1 cut(s) | 1067 |
| Bsp1286I | GDGCHC | 2 cut(s) | 47, 740 |
| Bsp143I | GATC | 3 cut(s) | 568, 751, 1073 |
| BspACI | CCGC | 3 cut(s) | 304, 434, 1047 |
| BspCNI | CTCAG | 3 cut(s) | 659, 733, 893 |
| BspDI | ATCGAT | 1 cut(s) | 105 |
| BspFNI | CGCG | 1 cut(s) | 306 |
| BspLI | GGNNCC | 1 cut(s) | 438 |
| BspPI | GGATC | 1 cut(s) | 1081 |
| BspT104I | TTCGAA | 1 cut(s) | 1067 |
| BsrI | ACTGG | 8 cut(s) | 98, 156, 328, 424, 550, 617, 847, 1024 |
| BssECI | CCNNGG | 2 cut(s) | 482, 659 |
| BssMI | GATC | 3 cut(s) | 568, 751, 1073 |
| Bst2UI | CCWGG | 4 cut(s) | 404, 483, 630, 1031 |
| Bst4CI | ACNGT | 2 cut(s) | 226, 703 |
| BstBI | TTCGAA | 1 cut(s) | 1067 |
| BstDEI | CTNAG | 3 cut(s) | 646, 741, 880 |
| BstEII | GGTNACC | 1 cut(s) | 296 |
| BstF5I | GGATG | 2 cut(s) | 492, 893 |
| BstFNI | CGCG | 1 cut(s) | 306 |
| BstKTI | GATC | 3 cut(s) | 571, 754, 1076 |
| BstMAI | GTCTC | 3 cut(s) | 855, 867, 891 |
| BstMBI | GATC | 3 cut(s) | 568, 751, 1073 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 77, 1017, 1026 |
| BstNI | CCWGG | 4 cut(s) | 404, 483, 630, 1031 |
| BstPI | GGTNACC | 1 cut(s) | 296 |
| BstSCI | CCNGG | 5 cut(s) | 402, 481, 628, 810, 1029 |
| BstUI | CGCG | 1 cut(s) | 306 |
| BstV1I | GCAGC | 2 cut(s) | 801, 1007 |
| BstV2I | GAAGAC | 1 cut(s) | 357 |
| BstX2I | RGATCY | 1 cut(s) | 1073 |
| BstYI | RGATCY | 1 cut(s) | 1073 |
| Bsu15I | ATCGAT | 1 cut(s) | 105 |
| BsuI | GTATCC | 1 cut(s) | 409 |
| BsuTUI | ATCGAT | 1 cut(s) | 105 |
| BtsCI | GGATG | 2 cut(s) | 492, 893 |
| BtsI | GCAGTG | 1 cut(s) | 766 |
| BtsIMutI | CAGTG | 4 cut(s) | 699, 738, 766, 1031 |
| Cfr13I | GGNCC | 3 cut(s) | 339, 437, 626 |
| ClaI | ATCGAT | 1 cut(s) | 105 |
| CsiI | ACCWGGT | 2 cut(s) | 402, 628 |
| Csp6I | GTAC | 1 cut(s) | 32 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 331, 366 |
| CviAII | CATG | 4 cut(s) | 177, 373, 519, 917 |
| CviJI | RGCY | 8 cut(s) | 122, 453, 645, 671, 745, 792, 1020, 1064 |
| CviKI_1 | RGCY | 8 cut(s) | 122, 453, 645, 671, 745, 792, 1020, 1064 |
| CviQI | GTAC | 1 cut(s) | 32 |
| DdeI | CTNAG | 3 cut(s) | 646, 741, 880 |
| DpnI | GATC | 3 cut(s) | 570, 753, 1075 |
| DpnII | GATC | 3 cut(s) | 568, 751, 1073 |
| DriI | GACNNNNNGTC | 1 cut(s) | 435 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 435 |
| Eco47I | GGWCC | 3 cut(s) | 339, 437, 626 |
| Eco88I | CYCGRG | 1 cut(s) | 660 |
| Eco91I | GGTNACC | 1 cut(s) | 296 |
| EcoO109I | RGGNCCY | 1 cut(s) | 437 |
| EcoO65I | GGTNACC | 1 cut(s) | 296 |
| EcoRII | CCWGG | 4 cut(s) | 402, 481, 628, 1029 |
| EcoT22I | ATGCAT | 1 cut(s) | 498 |
| FaeI | CATG | 4 cut(s) | 180, 376, 522, 920 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1048, 1080 |
| FatI | CATG | 4 cut(s) | 176, 372, 518, 916 |
| FauI | CCCGC | 1 cut(s) | 427 |
| FauNDI | CATATG | 3 cut(s) | 88, 197, 1042 |
| Fnu4HI | GCNGC | 3 cut(s) | 790, 1021, 1047 |
| FokI | GGATG | 2 cut(s) | 499, 900 |
| Fsp4HI | GCNGC | 3 cut(s) | 790, 1021, 1047 |
| FspBI | CTAG | 4 cut(s) | 72, 833, 854, 894 |
| GluI | GCNGC | 3 cut(s) | 790, 1021, 1047 |
| HapII | CCGG | 2 cut(s) | 621, 812 |
| Hin1II | CATG | 4 cut(s) | 180, 376, 522, 920 |
| HincII | GTYRAC | 2 cut(s) | 429, 513 |
| HindII | GTYRAC | 2 cut(s) | 429, 513 |
| HinfI | GANTC | 3 cut(s) | 5, 392, 899 |
| HpaII | CCGG | 2 cut(s) | 621, 812 |
| HphI | GGTGA | 2 cut(s) | 434, 547 |
| Hpy166II | GTNNAC | 3 cut(s) | 342, 429, 513 |
| Hpy188I | TCNGA | 3 cut(s) | 397, 568, 883 |
| Hpy188III | TCNNGA | 3 cut(s) | 854, 931, 1080 |
| Hpy8I | GTNNAC | 3 cut(s) | 342, 429, 513 |
| Hpy99I | CGWCG | 1 cut(s) | 530 |
| HpyAV | CCTTC | 3 cut(s) | 568, 937, 1063 |
| HpyCH4III | ACNGT | 2 cut(s) | 226, 703 |
| HpyCH4V | TGCA | 6 cut(s) | 80, 496, 759, 822, 891, 999 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 77, 1017, 1026 |
| HpyF3I | CTNAG | 3 cut(s) | 646, 741, 880 |
| Hsp92II | CATG | 4 cut(s) | 180, 376, 522, 920 |
| Kzo9I | GATC | 3 cut(s) | 568, 751, 1073 |
| LmnI | GCTCC | 1 cut(s) | 522 |
| Lsp1109I | GCAGC | 2 cut(s) | 801, 1007 |
| LweI | GCATC | 3 cut(s) | 67, 477, 878 |
| MabI | ACCWGGT | 2 cut(s) | 402, 628 |
| MaeI | CTAG | 4 cut(s) | 72, 833, 854, 894 |
| MaeIII | GTNAC | 5 cut(s) | 211, 296, 319, 500, 703 |
| MalI | GATC | 3 cut(s) | 570, 753, 1075 |
| MboI | GATC | 3 cut(s) | 568, 751, 1073 |
| MboII | GAAGA | 7 cut(s) | 302, 351, 357, 394, 542, 952, 1068 |
| MflI | RGATCY | 1 cut(s) | 1073 |
| MhlI | GDGCHC | 2 cut(s) | 47, 740 |
| MluCI | AATT | 4 cut(s) | 143, 265, 598, 685 |
| MlyI | GAGTC | 2 cut(s) | 14, 893 |
| MmeI | TCCRAC | 2 cut(s) | 291, 488 |
| MnlI | CCTC | 6 cut(s) | 131, 264, 311, 617, 669, 1022 |
| Mph1103I | ATGCAT | 1 cut(s) | 498 |
| MroXI | GAANNNNTTC | 1 cut(s) | 358 |
| MseI | TTAA | 3 cut(s) | 410, 593, 840 |
| MslI | CAYNNNNRTG | 1 cut(s) | 377 |
| MspA1I | CMGCKG | 3 cut(s) | 434, 792, 1020 |
| MspI | CCGG | 2 cut(s) | 621, 812 |
| MspR9I | CCNGG | 5 cut(s) | 404, 483, 630, 812, 1031 |
| Mva1269I | GAATGC | 1 cut(s) | 1001 |
| MvaI | CCWGG | 4 cut(s) | 404, 483, 630, 1031 |
| MvnI | CGCG | 1 cut(s) | 306 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 77, 1017, 1026 |
| NciI | CCSGG | 1 cut(s) | 812 |
| NdeI | CATATG | 3 cut(s) | 88, 197, 1042 |
| NdeII | GATC | 3 cut(s) | 568, 751, 1073 |
| NlaIII | CATG | 4 cut(s) | 180, 376, 522, 920 |
| NlaIV | GGNNCC | 1 cut(s) | 438 |
| NmuCI | GTSAC | 1 cut(s) | 211 |
| NsiI | ATGCAT | 1 cut(s) | 498 |
| NspV | TTCGAA | 1 cut(s) | 1067 |
| PctI | GAATGC | 1 cut(s) | 1001 |
| PdmI | GAANNNNTTC | 1 cut(s) | 358 |
| PfeI | GAWTC | 1 cut(s) | 392 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 545 |
| PkrI | GCNGC | 3 cut(s) | 791, 1022, 1048 |
| PleI | GAGTC | 2 cut(s) | 13, 893 |
| PpsI | GAGTC | 2 cut(s) | 13, 893 |
| PpuMI | RGGWCCY | 1 cut(s) | 437 |
| Psp5II | RGGWCCY | 1 cut(s) | 437 |
| Psp6I | CCWGG | 4 cut(s) | 402, 481, 628, 1029 |
| PspEI | GGTNACC | 1 cut(s) | 296 |
| PspGI | CCWGG | 4 cut(s) | 402, 481, 628, 1029 |
| PspN4I | GGNNCC | 1 cut(s) | 438 |
| PspPI | GGNCC | 3 cut(s) | 339, 437, 626 |
| PspPPI | RGGWCCY | 1 cut(s) | 437 |
| PsuI | RGATCY | 1 cut(s) | 1073 |
| PvuII | CAGCTG | 2 cut(s) | 792, 1020 |
| RsaI | GTAC | 1 cut(s) | 33 |
| RsaNI | GTAC | 1 cut(s) | 32 |
| RseI | CAYNNNNRTG | 1 cut(s) | 377 |
| SaqAI | TTAA | 3 cut(s) | 410, 593, 840 |
| SatI | GCNGC | 3 cut(s) | 790, 1021, 1047 |
| Sau3AI | GATC | 3 cut(s) | 568, 751, 1073 |
| Sau96I | GGNCC | 3 cut(s) | 339, 437, 626 |
| ScaI | AGTACT | 1 cut(s) | 33 |
| SchI | GAGTC | 2 cut(s) | 14, 893 |
| ScrFI | CCNGG | 5 cut(s) | 404, 483, 630, 812, 1031 |
| SduI | GDGCHC | 2 cut(s) | 47, 740 |
| SexAI | ACCWGGT | 2 cut(s) | 402, 628 |
| SfaNI | GCATC | 3 cut(s) | 67, 477, 878 |
| SfuI | TTCGAA | 1 cut(s) | 1067 |
| SinI | GGWCC | 3 cut(s) | 339, 437, 626 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 377 |
| SmlI | CTYRAG | 1 cut(s) | 931 |
| SmoI | CTYRAG | 1 cut(s) | 931 |
| Sse9I | AATT | 4 cut(s) | 143, 265, 598, 685 |
| SsiI | CCGC | 3 cut(s) | 304, 434, 1047 |
| SspMI | CTAG | 4 cut(s) | 72, 833, 854, 894 |
| StyD4I | CCNGG | 5 cut(s) | 402, 481, 628, 810, 1029 |
| TaaI | ACNGT | 2 cut(s) | 226, 703 |
| TaqI | TCGA | 3 cut(s) | 105, 288, 1067 |
| TasI | AATT | 4 cut(s) | 143, 265, 598, 685 |
| TatI | WGTACW | 1 cut(s) | 31 |
| TauI | GCSGC | 1 cut(s) | 1049 |
| TfiI | GAWTC | 1 cut(s) | 392 |
| Tru1I | TTAA | 3 cut(s) | 410, 593, 840 |
| Tru9I | TTAA | 3 cut(s) | 410, 593, 840 |
| TscAI | CASTG | 4 cut(s) | 706, 745, 766, 1031 |
| TseFI | GTSAC | 1 cut(s) | 211 |
| TseI | GCWGC | 2 cut(s) | 789, 1020 |
| Tsp45I | GTSAC | 1 cut(s) | 211 |
| TspDTI | ATGAA | 5 cut(s) | 132, 466, 507, 962, 1002 |
| TspRI | CASTG | 4 cut(s) | 706, 745, 766, 1031 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 545 |
| VpaK11BI | GGWCC | 3 cut(s) | 339, 437, 626 |
| XapI | RAATTY | 3 cut(s) | 143, 598, 685 |
| XbaI | TCTAGA | 1 cut(s) | 853 |
| XmnI | GAANNNNTTC | 1 cut(s) | 358 |
| XspI | CTAG | 4 cut(s) | 72, 833, 854, 894 |
| ZrmI | AGTACT | 1 cut(s) | 33 |
| Zsp2I | ATGCAT | 1 cut(s) | 498 |