pycom09g02350

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000412
Physical Location & Seq
Forward (+)
1785892 .. 1787345
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g02350.1

Sequence Viewer

Length: 927 bp
ATGAAAGTGGGAAACCCAGATTCAGAAAGCAACGTTGACAATGAAACAGAATGCAGGAACGGGTGCTTAAATAGCCGCCCGTGCAAGGTTTATTCATATACTAAATCTGAAAACAGTAGTAATCGAATTGAGGCGCCTACTTCATTGTGCAGAATATGGAACGTGGGAGATCTAAATAATCTTGCAGAAGAGTATACCAATACGGGCCAAGACCTCTATGTTCGCGTTGCGTTGTCTGATTTAGAATCAACTGTAAGAGACTGTAAGCCTTGCGGCACAACCATCATCCCTTATCCCCTGAGCACAAGACCGGGTTGCGGTGACCCCATGTACTTCCGTTTCAAGTGCAACTACTTCACAGGTCAGGTTAGCTTTGTGGGACTGAATGACATCTTGTTTAGAGTTATTAGCATTAACTCGAGTTCACAGAGATTTTTCATCCAAGGCTTCCAAACCGAAAATGTAGATAAATGTGATCGTATGAACAGAGGGGTAAATTCGCAGATCAACACATCACCGCCATTTAAAGTAATAAGTTTGTGCAATGCTGACCTGGGTAATTTTAGTTCTGAAGTACTGTCATCCAGAGGTCCGATTGTAGTCGAGATGGGTTGGGAGCTACCACTGGAACCAACCTGTGAAAAATCTTCAGACTGCACGGATTGGCCACATTCAATGTGCAATCCTGCAAGCGATGGAAATAAAAGATGCCTTTGCAAATCCAGTTTTCGATGGGATCCCTTGAAATTAAGATGTACTCAAGAAGGTATTCTTCAAGGTTCATCAAAGGAAGACCGTACGAAAAGAAAATTGCCATTGCCTCTGATAACTGTAGCGGTGCTTTTAAGTGTGATTTTTCTGGCATGCATCGTCATTTCCATTTATATATGGAGAAGAAATATGACCAACAAACGAGCGATCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin GUB_WAK_bind PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

309

Amino Acids

34.64

Weight (kDa)

8.4

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230
fragaria_vesca FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44244 FvH4_6g44245 FvH4_6g44245 FvH4_6g44260
malus_domestica MD04G1084700.v1.1 MD09G1099700.v1.1 MD09G1099800.v1.1 MD09G1099900.v1.1 MD09G1100000.v1.1 MD09G1100100.v1.1 MD17G1087900.v1.1
prunus_persica Prupe.3G226000_v2.0.a1 Prupe.3G226200_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226600_v2.0.a1 Prupe.3G226700_v2.0.a1
pyrus_communis pycom02g23070 pycom07g15320 pycom09g02310 pycom09g02330 pycom09g02340 pycom09g02350 pycom09g02360 pycom09g02400 pycom09g02410 pycom09g02430 pycom10g07020 pycom17g08490
rosa_chinensis RchiOBHm_Chr1g0328701 RchiOBHm_Chr2g0161021 RchiOBHm_Chr2g0161031 RchiOBHm_Chr2g0161081 RchiOBHm_Chr2g0161101
rosa_laevigata RLG00000021249 RLG00000021250 RLG00000021251 RLG00000021253 RLG00000021257 RLG00000029922
rosa_multiflora Rmu_sc0000955.1_g000023 Rmu_sc0000955.1_g000025 Rmu_sc0000955.1_g000041 Rmu_sc0002312.1_g000012 Rmu_sc0002481.1_g000021 Rmu_sc0002481.1_g000026 Rmu_sc0002481.1_g000028 Rmu_sc0002481.1_g000039 Rmu_sc0006420.1_g000017
rosa_roxburghii Rroxscaffold_2G00089160 Rroxscaffold_2G00089200 Rroxscaffold_2G00089220 Rroxscaffold_2G00089270 Rroxscaffold_2G00089300 Rroxscaffold_4G00321430
rosa_rugosa Rorug02G0485900 Rorug02G0486100 Rorug03G0345100
rosa_samantha Rh1AG094100 Rh1DG097200 Rh2AG552000 Rh2AG552100 Rh2AG552200 Rh2AG552300 Rh2AG552500 Rh2BG566400 Rh2BG566500 Rh2CG535800 Rh2CG535900 Rh2CG536100 Rh2CG536200 Rh2DG575000 Rh2DG575100 Rh2DG575400 Rh2DG575500 Rh2DG575600 Rh4AG077200 Rh4CG082400
rosa_wichuraiana Rw2G045690 Rw2G045700 Rw2G045710 Rw4G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 133
AccI GTMKAC 1 cut(s) 194
AccII CGCG 1 cut(s) 225
AciI CCGC 5 cut(s) 76, 273, 318, 518, 836
AclI AACGTT 1 cut(s) 33
AclWI GGATC 2 cut(s) 731, 744
AcoI YGGCCR 1 cut(s) 665
AcsI RAATTY 1 cut(s) 496
AcuI CTGAAG 2 cut(s) 591, 633
AcyI GRCGYC 1 cut(s) 134
AfaI GTAC 4 cut(s) 332, 576, 757, 799
AfiI CCNNNNNNNGG 2 cut(s) 85, 317
AgsI TTSAA 4 cut(s) 343, 675, 745, 776
AjnI CCWGG 1 cut(s) 552
AluBI AGCT 2 cut(s) 372, 619
AluI AGCT 2 cut(s) 372, 619
Alw21I GWGCWC 1 cut(s) 305
Alw26I GTCTC 1 cut(s) 252
AlwI GGATC 2 cut(s) 731, 744
Ama87I CYCGRG 1 cut(s) 418
AoxI GGCC 2 cut(s) 205, 665
ApoI RAATTY 1 cut(s) 496
Asp700I GAANNNNTTC 1 cut(s) 768
AspLEI GCGC 1 cut(s) 136
AspS9I GGNCC 2 cut(s) 205, 590
AsuC2I CCSGG 1 cut(s) 312
AsuHPI GGTGA 2 cut(s) 332, 507
AvaI CYCGRG 1 cut(s) 418
AvaII GGWCC 1 cut(s) 590
BalI TGGCCA 1 cut(s) 667
BamHI GGATCC 1 cut(s) 736
BanI GGYRCC 1 cut(s) 133
BbsI GAAGAC 1 cut(s) 798
Bbv12I GWGCWC 1 cut(s) 305
BccI CCATC 4 cut(s) 290, 601, 689, 726
BciT130I CCWGG 1 cut(s) 554
BcnI CCSGG 1 cut(s) 312
BcoDI GTCTC 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 831
BfoI RGCGCY 1 cut(s) 137
BglII AGATCT 1 cut(s) 169
BisI GCNGC 2 cut(s) 76, 274
BlsI GCNGC 2 cut(s) 77, 275
BmcAI AGTACT 1 cut(s) 576
Bme1390I CCNGG 2 cut(s) 312, 554
Bme18I GGWCC 1 cut(s) 590
BmeT110I CYCGRG 1 cut(s) 418
BmgT120I GGNCC 2 cut(s) 205, 590
BmiI GGNNCC 3 cut(s) 135, 630, 738
BmrFI CCNGG 2 cut(s) 312, 554
BmsI GCATC 2 cut(s) 698, 876
BpiI GAAGAC 1 cut(s) 798
Bpu10I CCTNAGC 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 744
BpuMI CCSGG 1 cut(s) 312
BsaHI GRCGYC 1 cut(s) 134
BsaJI CCNNGG 2 cut(s) 442, 553
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 317
Bse1I ACTGG 2 cut(s) 630, 723
Bse3DI GCAATG 2 cut(s) 550, 815
BseBI CCWGG 1 cut(s) 554
BseDI CCNNGG 2 cut(s) 442, 553
BseGI GGATG 3 cut(s) 285, 438, 581
BseLI CCNNNNNNNGG 2 cut(s) 85, 317
BseMI GCAATG 2 cut(s) 550, 815
BseMII CTCAG 1 cut(s) 290
BseNI ACTGG 2 cut(s) 630, 723
BsgI GTGCAG 2 cut(s) 169, 640
Bsh1236I CGCG 1 cut(s) 225
BshFI GGCC 2 cut(s) 207, 667
BshNI GGYRCC 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 305
BsiHKCI CYCGRG 1 cut(s) 418
BsiSI CCGG 1 cut(s) 311
BsiWI CGTACG 1 cut(s) 797
BslFI GGGAC 1 cut(s) 393
BslI CCNNNNNNNGG 2 cut(s) 85, 317
BsmAI GTCTC 1 cut(s) 252
BsmFI GGGAC 1 cut(s) 393
BsmI GAATGC 1 cut(s) 56
BsnI GGCC 2 cut(s) 207, 667
BsoBI CYCGRG 1 cut(s) 418
Bsp1286I GDGCHC 1 cut(s) 305
Bsp143I GATC 5 cut(s) 169, 475, 504, 736, 918
BspACI CCGC 5 cut(s) 76, 273, 318, 518, 836
BspANI GGCC 2 cut(s) 207, 667
BspCNI CTCAG 1 cut(s) 291
BspFNI CGCG 1 cut(s) 225
BspLI GGNNCC 3 cut(s) 135, 630, 738
BspPI GGATC 2 cut(s) 731, 744
BspT107I GGYRCC 1 cut(s) 133
BsrDI GCAATG 2 cut(s) 550, 815
BsrI ACTGG 2 cut(s) 630, 723
BssECI CCNNGG 2 cut(s) 442, 553
BssMI GATC 5 cut(s) 169, 475, 504, 736, 918
BssNAI GTATAC 1 cut(s) 195
BssNI GRCGYC 1 cut(s) 134
BssT1I CCWWGG 1 cut(s) 442
Bst1107I GTATAC 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 554
Bst4CI ACNGT 6 cut(s) 116, 253, 263, 579, 797, 832
Bst6I CTCTTC 1 cut(s) 183
BstACI GRCGYC 1 cut(s) 134
BstC8I GCNNGC 2 cut(s) 691, 865
BstDEI CTNAG 1 cut(s) 299
BstEII GGTNACC 1 cut(s) 320
BstF5I GGATG 3 cut(s) 285, 438, 581
BstFNI CGCG 1 cut(s) 225
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 5 cut(s) 172, 478, 507, 739, 921
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 5 cut(s) 169, 475, 504, 736, 918
BstMWI GCNNNNNNNGC 2 cut(s) 72, 81
BstNI CCWGG 1 cut(s) 554
BstNSI RCATGY 1 cut(s) 867
BstPI GGTNACC 1 cut(s) 320
BstSCI CCNGG 2 cut(s) 310, 552
BstSFI CTRYAG 1 cut(s) 831
BstUI CGCG 1 cut(s) 225
BstV2I GAAGAC 1 cut(s) 798
BstX2I RGATCY 2 cut(s) 169, 736
BstYI RGATCY 2 cut(s) 169, 736
BstZ17I GTATAC 1 cut(s) 195
BsuRI GGCC 2 cut(s) 207, 667
BtgZI GCGATG 1 cut(s) 708
BtsCI GGATG 3 cut(s) 285, 438, 581
BtsIMutI CAGTG 1 cut(s) 623
Cac8I GCNNGC 2 cut(s) 691, 865
CfoI GCGC 1 cut(s) 136
Cfr13I GGNCC 2 cut(s) 205, 590
Csp6I GTAC 4 cut(s) 331, 575, 756, 798
CviAII CATG 2 cut(s) 328, 864
CviJI RGCY 7 cut(s) 75, 207, 268, 372, 447, 619, 667
CviKI_1 RGCY 7 cut(s) 75, 207, 268, 372, 447, 619, 667
CviQI GTAC 4 cut(s) 331, 575, 756, 798
DdeI CTNAG 1 cut(s) 299
DinI GGCGCC 1 cut(s) 135
DpnI GATC 5 cut(s) 171, 477, 506, 738, 920
DpnII GATC 5 cut(s) 169, 475, 504, 736, 918
DraI TTTAAA 1 cut(s) 526
EaeI YGGCCR 1 cut(s) 665
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 442
Eco47I GGWCC 1 cut(s) 590
Eco57I CTGAAG 2 cut(s) 591, 633
Eco88I CYCGRG 1 cut(s) 418
Eco91I GGTNACC 1 cut(s) 320
EcoO65I GGTNACC 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 552
EcoT14I CCWWGG 1 cut(s) 442
EcoT22I ATGCAT 1 cut(s) 869
EgeI GGCGCC 1 cut(s) 135
EheI GGCGCC 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 442
FaeI CATG 2 cut(s) 331, 867
FalI AAGNNNNNCTT 2 cut(s) 756, 788
FaqI GGGAC 1 cut(s) 393
FatI CATG 2 cut(s) 327, 863
FblI GTMKAC 1 cut(s) 194
Fnu4HI GCNGC 2 cut(s) 76, 274
FokI GGATG 3 cut(s) 272, 425, 568
Fsp4HI GCNGC 2 cut(s) 76, 274
GlaI GCGC 1 cut(s) 135
GluI GCNGC 2 cut(s) 76, 274
HaeII RGCGCY 1 cut(s) 137
HaeIII GGCC 2 cut(s) 207, 667
HapII CCGG 1 cut(s) 311
HhaI GCGC 1 cut(s) 136
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 2 cut(s) 331, 867
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 2 cut(s) 20, 245
HpaII CCGG 1 cut(s) 311
HphI GGTGA 2 cut(s) 332, 507
Hpy166II GTNNAC 3 cut(s) 37, 195, 425
Hpy188I TCNGA 7 cut(s) 25, 109, 238, 571, 594, 652, 825
Hpy188III TCNNGA 3 cut(s) 585, 604, 761
Hpy8I GTNNAC 3 cut(s) 37, 195, 425
HpyAV CCTTC 1 cut(s) 758
HpyCH4III ACNGT 6 cut(s) 116, 253, 263, 579, 797, 832
HpyCH4IV ACGT 2 cut(s) 33, 162
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 81
HpyF3I CTNAG 1 cut(s) 299
HpySE526I ACGT 2 cut(s) 33, 162
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 2 cut(s) 331, 867
HspAI GCGC 1 cut(s) 134
KasI GGCGCC 1 cut(s) 133
Kzo9I GATC 5 cut(s) 169, 475, 504, 736, 918
LmnI GCTCC 1 cut(s) 616
LweI GCATC 2 cut(s) 698, 876
MaeII ACGT 2 cut(s) 33, 162
MaeIII GTNAC 1 cut(s) 320
MalI GATC 5 cut(s) 171, 477, 506, 738, 920
MboI GATC 5 cut(s) 169, 475, 504, 736, 918
MboII GAAGA 5 cut(s) 200, 639, 764, 803, 906
MflI RGATCY 2 cut(s) 169, 736
MhlI GDGCHC 1 cut(s) 305
MlsI TGGCCA 1 cut(s) 667
MluCI AATT 5 cut(s) 126, 496, 559, 746, 809
MluNI TGGCCA 1 cut(s) 667
Mly113I GGCGCC 1 cut(s) 134
MnlI CCTC 5 cut(s) 124, 224, 482, 581, 831
Mox20I TGGCCA 1 cut(s) 667
Mph1103I ATGCAT 1 cut(s) 869
MroXI GAANNNNTTC 1 cut(s) 768
MscI TGGCCA 1 cut(s) 667
MseI TTAA 5 cut(s) 68, 414, 525, 749, 845
Msp20I TGGCCA 1 cut(s) 667
MspI CCGG 1 cut(s) 311
MspR9I CCNGG 2 cut(s) 312, 554
Mva1269I GAATGC 1 cut(s) 56
MvaI CCWGG 1 cut(s) 554
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 2 cut(s) 72, 81
NarI GGCGCC 1 cut(s) 134
NciI CCSGG 1 cut(s) 312
NdeII GATC 5 cut(s) 169, 475, 504, 736, 918
NlaIII CATG 2 cut(s) 331, 867
NlaIV GGNNCC 3 cut(s) 135, 630, 738
NmuCI GTSAC 1 cut(s) 320
NsiI ATGCAT 1 cut(s) 869
NspI RCATGY 1 cut(s) 867
PaeI GCATGC 1 cut(s) 867
PaeR7I CTCGAG 1 cut(s) 418
PctI GAATGC 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 768
PfeI GAWTC 2 cut(s) 20, 245
Pfl23II CGTACG 1 cut(s) 797
PkrI GCNGC 2 cut(s) 77, 275
PluTI GGCGCC 1 cut(s) 137
Psp1406I AACGTT 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 552
PspEI GGTNACC 1 cut(s) 320
PspGI CCWGG 1 cut(s) 552
PspLI CGTACG 1 cut(s) 797
PspN4I GGNNCC 3 cut(s) 135, 630, 738
PspPI GGNCC 2 cut(s) 205, 590
PspXI VCTCGAGB 1 cut(s) 418
PsrI GAACNNNNNNTAC 2 cut(s) 550, 582
PsuI RGATCY 2 cut(s) 169, 736
RsaI GTAC 4 cut(s) 332, 576, 757, 799
RsaNI GTAC 4 cut(s) 331, 575, 756, 798
SaqAI TTAA 5 cut(s) 68, 414, 525, 749, 845
SatI GCNGC 2 cut(s) 76, 274
Sau3AI GATC 5 cut(s) 169, 475, 504, 736, 918
Sau96I GGNCC 2 cut(s) 205, 590
ScaI AGTACT 1 cut(s) 576
ScrFI CCNGG 2 cut(s) 312, 554
SduI GDGCHC 1 cut(s) 305
SfaNI GCATC 2 cut(s) 698, 876
SfcI CTRYAG 1 cut(s) 831
SfoI GGCGCC 1 cut(s) 135
Sfr274I CTCGAG 1 cut(s) 418
SinI GGWCC 1 cut(s) 590
SlaI CTCGAG 1 cut(s) 418
SmlI CTYRAG 2 cut(s) 418, 759
SmoI CTYRAG 2 cut(s) 418, 759
SphI GCATGC 1 cut(s) 867
Sse9I AATT 5 cut(s) 126, 496, 559, 746, 809
SsiI CCGC 5 cut(s) 76, 273, 318, 518, 836
SspDI GGCGCC 1 cut(s) 133
StyD4I CCNGG 2 cut(s) 310, 552
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 6 cut(s) 116, 253, 263, 579, 797, 832
TaiI ACGT 2 cut(s) 36, 165
TaqI TCGA 4 cut(s) 124, 419, 603, 730
TasI AATT 5 cut(s) 126, 496, 559, 746, 809
TatI WGTACW 3 cut(s) 330, 574, 755
TauI GCSGC 2 cut(s) 78, 276
TfiI GAWTC 2 cut(s) 20, 245
Tru1I TTAA 5 cut(s) 68, 414, 525, 749, 845
Tru9I TTAA 5 cut(s) 68, 414, 525, 749, 845
TscAI CASTG 1 cut(s) 630
TseFI GTSAC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 7 cut(s) 17, 57, 84, 132, 427, 497, 771
TspGWI ACGGA 2 cut(s) 326, 674
TspRI CASTG 1 cut(s) 630
VpaK11BI GGWCC 1 cut(s) 590
XapI RAATTY 1 cut(s) 496
XceI RCATGY 1 cut(s) 867
XhoI CTCGAG 1 cut(s) 418
XmiI GTMKAC 1 cut(s) 194
XmnI GAANNNNTTC 1 cut(s) 768
ZrmI AGTACT 1 cut(s) 576
Zsp2I ATGCAT 1 cut(s) 869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.