Rh2AG552500

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000412
Physical Location & Seq
Reverse (-)
78324008 .. 78329372
5365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG552500.1

Sequence Viewer

Length: 3180 bp
ATGAAGTTTATCCGAAGAACAAAGATAACAAAAGCAAATGGCATTATTATATGCTTTGCAAATGGCATGCTATCTTCCATCTTCTTATCATATGTACTCTTGTTGTGCTTTTCTCACCCCTTCTGCTCTGCTAGAGATACAATAACCGAAGATGATCCAATTATAGATGATGGATCAGAAGGTCTTGTTTCAGCTGGAGGAAAATTTGAACTGGGATTCTTTTCCCTAAATGGAACAAGAAGCTCAGGCAGTTATAGAAGATATGTTGGCATATGGTATCACAAACTGACTCCAAGGACAGTTGTATGGGTTGCCAACAGAGACAAGCCACTACTTGCCAATCACACTGGAGTTCTTGCAATTAATCAGGGTACCCTCCAAGTATTGGATATAACTTCTAGAAAGTCTTTATGGTCGGCAGAGGTCGAAGTAATACCTTCTTTCAATCGGACAGTGAAACTCAAGGATGATGGGAACTTGGTGTTAAGTGATACTGATGCACATTTGGCAGCAGTTCTGTGGCAAAGCTTTGAAAATCCTACTGATACATTCATTGCTGGGATGCTAATGAATAAAAACTTTCGGTTGACTTCTTGGAGAGAAGAAAATGACCCGGGACTTGGGACATTCACCTTCAAACTAGATCAAGGTGAGAAGCAGTATATCATCTTAAAGACATCGGTTCCTTACTGGAAAAGTGGAGAGCCAGGTAATCATTTCAGCTCAGATGAAATGCGTCCTGAAGTAGCTTACTTGCTATTAAATTTCAGCAGCAGCAGCAGCACTTATACAAGCAGACCGTCTACTTATAATTTTACAATTGTGCGACGTTGGGATTACAGTTATACACGGCTGGTGATAGATTCTACTGGAAAGTTACGGTTTTGGACTTGGAATGAAGACAAGAAGCAGTGGCTTCTTTCATGGTGGGAGCCAAAAGATCAGTGCAGTGTGTTTAACCCTTGTGGAAACTTTGGAAGCTGTAATAATAATAGCTGGCCTTTGGTATGCAAATGTTTACCCGGTTTCAAGCCCCAGTTCCCAGAATATTGGGATTCTGGAGATTTTTCAGGTGGCTGTTATAGAGAGTCATCAATGTCTGACAACAACAGCACGTTCTTGAGCTTAAAGATGATGAAAGTTGGAGAGGCAGAGTCACAGTTCGATGTGGCTAATGAAACAGAATGCAGGAAGGAGTGCCGAGAGAATCCCCTGTGCCAGGCTTACTCGTATGCCGTTCTAGCTGAAGCCAGCGCACAAAGGGGTACTACTACTACCGGAAATTCCTCGTGCTGGACATGGTTGGAAGATCTAAATAACCTTGTAGAAGAGTACGCTACTGGCCACAACATCTCTGTTCGAGTTGCCTCGTCTGATATAGAATCTACTATAAGAGATTGCGAGCCTTGTGGCACAACGATGATCCCTTATCCGCTGAGCACCGGACTGGATTGTGGCGACCCCTTGTACTTCCGTTTCAGCTGCAACACTTCGACAGGCCAGGTTAGCTTCATGGGACTGAAGGACACTACCTTTAGAGTTATTATCATCAGACCAAGTACGCAGAAATTTGTACTCCAAGGGTTACCAGCCCAAAAGGTGGATAATTGTGATAATAGAAGCAGAGCCAACAGTCTGCTGCTCTACCCATCGTTCCCATTTAACATAAGTAGTTGGTGCAATGCTGACCTCGGAAACTTTAGTTCTGAAGTATCTTCTTCTGGGTTCCTTAACGTAGTAGAGTTGAGTTGGGAGCCACCGCTGGAACCACCCTGCAATACAGCAGCAGACTGCAAGGATTGGCCAAATTCAACCTGCAATTCACCAGGACATGGAATGAAAAGATGCTTTTGCAATGATAGTTTTCAATGGAATTCTTCTAACTTCAATTGTACTCAAGAAAGTAGTCTTCATGAGCCATCAAACCCTCCATCGCAATTGTCCTCAGGAGAGCATTCAAACAGAAAAGTTTCATTCTCTCTGATAATTGTGGCGGTGCTGATAAGCATGATTTTACTGGCATTCATCATTTCTATTTATATATGGAGAAGAAAGATGACCAGAAAACAAGGTGTAAAATTCTTATCAGATCAAATAAGTCGTCCACAGCTTGATAGTGAAAGACGAGTAAAGGAGTTGATAGACACAAGTGAGTTCAAGGAAGAAGATGATCAGAAAGGTATAGATGTACCTTTTTTTGATTTGCAAAGCATACTAGAAGCTACAGATAATTTCTCAGATGCTAACAAGCTAGGACAAGGGGGATATGGGCCTGTTTACAAGGGGAAGTTTCTTGGAGGTCAAGAAATAGCAGTAAAAAGGCTATCAAAGGTTTCAGGACAAGGGTTACAGGAATTTAAGAATGAGGTCGTGCTGATTGCCAAACTTCAGCACCGAAATCTTGTAAGACTCAGAGGATATTGCATGAAAGGAGAAGAAAAGATTTTACTTTATGAGTACATGCCCAACAAAAGCTTAGATTCCTTTATATTTGATCATACACAAAGCGTATTTCTCAGTTGGGAGATGCGGTTTAACATCATTTTGGGAATCGCTCGAGGACTACTTTATCTTCATCAAGATTCCAGGTTGAGGATTATTCATAGAGATTTGAAAACCAGCAACGTGCTTTTGGATGACGAGATGAACCCCAAGATATCTGACTTTGGCTTGGCCAGGATTGTTGGAGGCAAAGAAACCGAGGCAAACACAAATACAGTAGTAGGAACCTATGGCTACATGTCTCCGGAATATGCATTAGATGGAACTTTCTCAGTCAAATCAGATGTTTTTAGTTTCGGTGTGGTTCTTCTTGAGATAATCAGTGGAAAGAAAAATGCAGGATTTTATCAGTCCAAACAAACTTTCAGCCTCCTTGGTTATACATGGAGACTGTGGACAGAAGACAAGGTGTTGGATTTAATGGACAAGAATTTGGAAGAAAGTTGCAACAGAAGTGAATTTATAAAGTGTGTAAATGTTGGGCTCTTATGCGTACAAGAAGATCCGGTTGATCGCCCTACAATGTCAAATGTTATTACCTTGCTTGACAGTGAAACTGCAATCCCTGCAACTCCTAAACAACCAGCCTTTTTCATAAGGAGAGGCAACTCTAGCACAGCTTCCTCTTCTACTAAGCCAGAAACAATTTCTGAAATAACTACTCTGGAAGGCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

1059

Amino Acids

119.32

Weight (kDa)

5.83

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 100 - 195 1.8e-22 D-mannose binding lectin
S_locus_glycop PF00954 231 - 346 2.3e-20 S-locus glycoprotein domain
PAN_2 PF08276 368 - 440 4.7e-07 PAN-like domain
Pkinase PF00069 746 - 1012 3.8e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 749 - 1014 2.4e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230
fragaria_vesca FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44244 FvH4_6g44245 FvH4_6g44245 FvH4_6g44260
malus_domestica MD04G1084700.v1.1 MD09G1099700.v1.1 MD09G1099800.v1.1 MD09G1099900.v1.1 MD09G1100000.v1.1 MD09G1100100.v1.1 MD17G1087900.v1.1
prunus_persica Prupe.3G226000_v2.0.a1 Prupe.3G226200_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226600_v2.0.a1 Prupe.3G226700_v2.0.a1
pyrus_communis pycom02g23070 pycom07g15320 pycom09g02310 pycom09g02330 pycom09g02340 pycom09g02350 pycom09g02360 pycom09g02400 pycom09g02410 pycom09g02430 pycom10g07020 pycom17g08490
rosa_chinensis RchiOBHm_Chr1g0328701 RchiOBHm_Chr2g0161021 RchiOBHm_Chr2g0161031 RchiOBHm_Chr2g0161081 RchiOBHm_Chr2g0161101
rosa_laevigata RLG00000021249 RLG00000021250 RLG00000021251 RLG00000021253 RLG00000021257 RLG00000029922
rosa_multiflora Rmu_sc0000955.1_g000023 Rmu_sc0000955.1_g000025 Rmu_sc0000955.1_g000041 Rmu_sc0002312.1_g000012 Rmu_sc0002481.1_g000021 Rmu_sc0002481.1_g000026 Rmu_sc0002481.1_g000028 Rmu_sc0002481.1_g000039 Rmu_sc0006420.1_g000017
rosa_roxburghii Rroxscaffold_2G00089160 Rroxscaffold_2G00089200 Rroxscaffold_2G00089220 Rroxscaffold_2G00089270 Rroxscaffold_2G00089300 Rroxscaffold_4G00321430
rosa_rugosa Rorug02G0485900 Rorug02G0486100 Rorug03G0345100
rosa_samantha Rh1AG094100 Rh1DG097200 Rh2AG552000 Rh2AG552100 Rh2AG552200 Rh2AG552300 Rh2AG552500 Rh2BG566400 Rh2BG566500 Rh2CG535800 Rh2CG535900 Rh2CG536100 Rh2CG536200 Rh2DG575000 Rh2DG575100 Rh2DG575400 Rh2DG575500 Rh2DG575600 Rh4AG077200 Rh4CG082400
rosa_wichuraiana Rw2G045690 Rw2G045700 Rw2G045710 Rw4G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 810, 2966
Acc36I ACCTGC 1 cut(s) 1823
Acc65I GGTACC 1 cut(s) 371
AccB1I GGYRCC 1 cut(s) 371
AccB7I CCANNNNNTGG 3 cut(s) 385, 1600, 1832
AccI GTMKAC 1 cut(s) 803
AccIII TCCGGA 1 cut(s) 2746
AciI CCGC 4 cut(s) 1433, 1760, 1994, 2530
AclWI GGATC 4 cut(s) 149, 181, 1417, 2999
AcoI YGGCCR 3 cut(s) 1342, 1802, 2673
AcuI CTGAAG 5 cut(s) 762, 1266, 1541, 1728, 2372
AfiI CCNNNNNNNGG 7 cut(s) 385, 620, 1219, 1293, 1600, 1832, 2592
AflIII ACRYGT 1 cut(s) 2739
AjnI CCWGG 6 cut(s) 706, 1218, 1500, 1825, 2585, 2675
AjuI GAANNNNNNNTTGG 2 cut(s) 2849, 2881
Alw21I GWGCWC 1 cut(s) 1442
Alw26I GTCTC 3 cut(s) 315, 2748, 2884
AlwI GGATC 4 cut(s) 149, 181, 1417, 2999
Ama87I CYCGRG 2 cut(s) 613, 2556
Aor13HI TCCGGA 1 cut(s) 2746
AoxI GGCC 6 cut(s) 998, 1342, 1498, 1802, 2270, 2673
ApeKI GCWGC 8 cut(s) 509, 771, 774, 777, 780, 1482, 1639, 1784
ArsI GACNNNNNNTTYG 2 cut(s) 2086, 2118
AseI ATTAAT 1 cut(s) 363
Asp700I GAANNNNTTC 1 cut(s) 1969
Asp718I GGTACC 1 cut(s) 371
AspLEI GCGC 1 cut(s) 1256
AspS9I GGNCC 1 cut(s) 2270
AsuC2I CCSGG 3 cut(s) 614, 615, 1023
AsuHPI GGTGA 5 cut(s) 107, 622, 662, 868, 1815
AvaI CYCGRG 2 cut(s) 613, 2556
AxyI CCTNAGG 1 cut(s) 1945
BalI TGGCCA 3 cut(s) 1344, 1804, 2675
BanI GGYRCC 1 cut(s) 371
BanII GRGCYC 1 cut(s) 2988
BauI CACGAG 1 cut(s) 1288
BbsI GAAGAC 3 cut(s) 906, 1901, 2910
Bbv12I GWGCWC 1 cut(s) 1442
BbvI GCAGC 8 cut(s) 521, 783, 786, 789, 792, 1469, 1626, 1796
BccI CCATC 7 cut(s) 86, 164, 464, 1657, 1927, 1939, 2756
BceAI ACGGC 2 cut(s) 866, 1220
BciT130I CCWGG 6 cut(s) 708, 1220, 1502, 1827, 2587, 2677
BclI TGATCA 2 cut(s) 2170, 2494
BcnI CCSGG 3 cut(s) 614, 615, 1023
BcoDI GTCTC 3 cut(s) 315, 2748, 2884
BfaI CTAG 7 cut(s) 132, 399, 641, 1241, 2216, 2252, 3114
BfmI CTRYAG 1 cut(s) 2223
BfuAI ACCTGC 1 cut(s) 1823
BglII AGATCT 1 cut(s) 1309
BisI GCNGC 8 cut(s) 510, 772, 775, 778, 781, 1483, 1640, 1785
BlpI GCTNAGC 1 cut(s) 1436
BlsI GCNGC 8 cut(s) 511, 773, 776, 779, 782, 1484, 1641, 1786
Bme1390I CCNGG 9 cut(s) 614, 615, 708, 1023, 1220, 1502, 1827, 2587, 2677
BmeT110I CYCGRG 2 cut(s) 613, 2556
BmgT120I GGNCC 1 cut(s) 2270
BmiI GGNNCC 7 cut(s) 373, 684, 933, 1727, 1755, 1767, 2728
BmrFI CCNGG 9 cut(s) 614, 615, 708, 1023, 1220, 1502, 1827, 2587, 2677
BmrI ACTGGG 2 cut(s) 221, 1030
BmsI GCATC 5 cut(s) 487, 552, 1835, 2230, 2517
BmuI ACTGGG 2 cut(s) 221, 1030
BpiI GAAGAC 3 cut(s) 906, 1901, 2910
BpmI CTGGAG 3 cut(s) 216, 369, 1080
Bpu10I CCTNAGC 1 cut(s) 244
Bpu1102I GCTNAGC 1 cut(s) 1436
BpuEI CTTGAG 4 cut(s) 446, 1141, 1881, 2834
BpuMI CCSGG 3 cut(s) 614, 615, 1023
BsaJI CCNNGG 6 cut(s) 293, 613, 1579, 1690, 2700, 2875
BsaWI WCCGGW 4 cut(s) 1277, 1442, 2746, 3007
BsaXI ACNNNNNCTCC 2 cut(s) 2516, 2546
Bsc4I CCNNNNNNNGG 7 cut(s) 385, 620, 1219, 1293, 1600, 1832, 2592
Bse1I ACTGG 8 cut(s) 216, 352, 695, 874, 1036, 1345, 1452, 2022
Bse21I CCTNAGG 1 cut(s) 1945
Bse3DI GCAATG 3 cut(s) 552, 1687, 1861
BseAI TCCGGA 1 cut(s) 2746
BseBI CCWGG 6 cut(s) 708, 1220, 1502, 1827, 2587, 2677
BseDI CCNNGG 6 cut(s) 293, 613, 1579, 1690, 2700, 2875
BseGI GGATG 3 cut(s) 472, 567, 2641
BseLI CCNNNNNNNGG 7 cut(s) 385, 620, 1219, 1293, 1600, 1832, 2592
BseMI GCAATG 3 cut(s) 552, 1687, 1861
BseMII CTCAG 8 cut(s) 258, 738, 1427, 1959, 2250, 2425, 2530, 2787
BseNI ACTGG 8 cut(s) 216, 352, 695, 874, 1036, 1345, 1452, 2022
BseXI GCAGC 8 cut(s) 521, 783, 786, 789, 792, 1469, 1626, 1796
BseYI CCCAGC 1 cut(s) 557
BsgI GTGCAG 1 cut(s) 967
BshFI GGCC 6 cut(s) 1000, 1344, 1500, 1804, 2272, 2675
BshNI GGYRCC 1 cut(s) 371
BsiHKAI GWGCWC 1 cut(s) 1442
BsiHKCI CYCGRG 2 cut(s) 613, 2556
BsiSI CCGG 6 cut(s) 614, 1023, 1278, 1443, 2747, 3008
BslFI GGGAC 3 cut(s) 630, 637, 1530
BslI CCNNNNNNNGG 7 cut(s) 385, 620, 1219, 1293, 1600, 1832, 2592
BsmAI GTCTC 3 cut(s) 315, 2748, 2884
BsmFI GGGAC 3 cut(s) 630, 637, 1530
BsmI GAATGC 3 cut(s) 1190, 1954, 2021
BsnI GGCC 6 cut(s) 1000, 1344, 1500, 1804, 2272, 2675
BsoBI CYCGRG 2 cut(s) 613, 2556
Bsp1286I GDGCHC 2 cut(s) 1442, 2988
Bsp13I TCCGGA 1 cut(s) 2746
Bsp1720I GCTNAGC 1 cut(s) 1436
BspACI CCGC 4 cut(s) 1433, 1760, 1994, 2530
BspANI GGCC 6 cut(s) 1000, 1344, 1500, 1804, 2272, 2675
BspCNI CTCAG 8 cut(s) 257, 737, 1428, 1958, 2249, 2424, 2529, 2786
BspEI TCCGGA 1 cut(s) 2746
BspHI TCATGA 1 cut(s) 1912
BspLI GGNNCC 7 cut(s) 373, 684, 933, 1727, 1755, 1767, 2728
BspMI ACCTGC 1 cut(s) 1823
BspPI GGATC 4 cut(s) 149, 181, 1417, 2999
BspT107I GGYRCC 1 cut(s) 371
BsrDI GCAATG 3 cut(s) 552, 1687, 1861
BsrI ACTGG 8 cut(s) 216, 352, 695, 874, 1036, 1345, 1452, 2022
BssECI CCNNGG 6 cut(s) 293, 613, 1579, 1690, 2700, 2875
BssSI CACGAG 1 cut(s) 1288
BssT1I CCWWGG 3 cut(s) 293, 1579, 2875
Bst2BI CACGAG 1 cut(s) 1288
Bst2UI CCWGG 6 cut(s) 708, 1220, 1502, 1827, 2587, 2677
Bst6I CTCTTC 2 cut(s) 1323, 3133
BstAPI GCANNNNNTGC 1 cut(s) 3068
BstC8I GCNNGC 4 cut(s) 68, 998, 1252, 1403
BstEII GGTNACC 1 cut(s) 1584
BstENI CCTNNNNNAGG 1 cut(s) 1217
BstF5I GGATG 3 cut(s) 472, 567, 2641
BstHHI GCGC 1 cut(s) 1256
BstMAI GTCTC 3 cut(s) 315, 2748, 2884
BstMWI GCNNNNNNNGC 7 cut(s) 506, 777, 780, 1241, 1506, 3068, 3114
BstNI CCWGG 6 cut(s) 708, 1220, 1502, 1827, 2587, 2677
BstNSI RCATGY 3 cut(s) 70, 2464, 2743
BstPI GGTNACC 1 cut(s) 1584
BstSCI CCNGG 9 cut(s) 612, 613, 706, 1021, 1218, 1500, 1825, 2585, 2675
BstSFI CTRYAG 1 cut(s) 2223
BstV1I GCAGC 8 cut(s) 521, 783, 786, 789, 792, 1469, 1626, 1796
BstV2I GAAGAC 3 cut(s) 906, 1901, 2910
BstX2I RGATCY 2 cut(s) 1309, 3004
BstXI CCANNNNNNTGG 1 cut(s) 1050
BstYI RGATCY 2 cut(s) 1309, 3004
Bsu36I CCTNAGG 1 cut(s) 1945
BsuRI GGCC 6 cut(s) 1000, 1344, 1500, 1804, 2272, 2675
BtgZI GCGATG 1 cut(s) 1917
BtsCI GGATG 3 cut(s) 472, 567, 2641
BtsI GCAGTG 2 cut(s) 917, 955
BtsIMutI CAGTG 7 cut(s) 345, 459, 917, 950, 955, 2830, 3058
BveI ACCTGC 1 cut(s) 1823
Cac8I GCNNGC 4 cut(s) 68, 998, 1252, 1403
CciI TCATGA 1 cut(s) 1912
CfoI GCGC 1 cut(s) 1256
Cfr13I GGNCC 1 cut(s) 2270
Cfr9I CCCGGG 1 cut(s) 613
CseI GACGC 1 cut(s) 725
EaeI YGGCCR 3 cut(s) 1342, 1802, 2673
Eam1104I CTCTTC 2 cut(s) 1323, 3133
EarI CTCTTC 2 cut(s) 1323, 3133
Eco130I CCWWGG 3 cut(s) 293, 1579, 2875
Eco24I GRGCYC 1 cut(s) 2988
Eco32I GATATC 1 cut(s) 2658
Eco57I CTGAAG 5 cut(s) 762, 1266, 1541, 1728, 2372
Eco81I CCTNAGG 1 cut(s) 1945
Eco88I CYCGRG 2 cut(s) 613, 2556
Eco91I GGTNACC 1 cut(s) 1584
EcoNI CCTNNNNNAGG 1 cut(s) 1217
EcoO65I GGTNACC 1 cut(s) 1584
EcoRI GAATTC 1 cut(s) 1873
EcoRII CCWGG 6 cut(s) 706, 1218, 1500, 1825, 2585, 2675
EcoRV GATATC 1 cut(s) 2658
EcoT14I CCWWGG 3 cut(s) 293, 1579, 2875
EcoT22I ATGCAT 1 cut(s) 2758
EcoT38I GRGCYC 1 cut(s) 2988
ErhI CCWWGG 3 cut(s) 293, 1579, 2875
FaqI GGGAC 3 cut(s) 630, 637, 1530
FauNDI CATATG 2 cut(s) 91, 272
FbaI TGATCA 2 cut(s) 2170, 2494
FblI GTMKAC 1 cut(s) 803
Fnu4HI GCNGC 8 cut(s) 510, 772, 775, 778, 781, 1483, 1640, 1785
FokI GGATG 3 cut(s) 479, 574, 2648
FriOI GRGCYC 1 cut(s) 2988
Fsp4HI GCNGC 8 cut(s) 510, 772, 775, 778, 781, 1483, 1640, 1785
FspBI CTAG 7 cut(s) 132, 399, 641, 1241, 2216, 2252, 3114
GlaI GCGC 1 cut(s) 1255
GluI GCNGC 8 cut(s) 510, 772, 775, 778, 781, 1483, 1640, 1785
GsaI CCCAGC 1 cut(s) 561
GsuI CTGGAG 3 cut(s) 216, 369, 1080
HaeIII GGCC 6 cut(s) 1000, 1344, 1500, 1804, 2272, 2675
HapII CCGG 6 cut(s) 614, 1023, 1278, 1443, 2747, 3008
HgaI GACGC 1 cut(s) 725
HhaI GCGC 1 cut(s) 1256
Hin6I GCGC 1 cut(s) 1254
HinP1I GCGC 1 cut(s) 1254
HincII GTYRAC 1 cut(s) 588
HindII GTYRAC 1 cut(s) 588
HindIII AAGCTT 2 cut(s) 526, 2473
HpaII CCGG 6 cut(s) 614, 1023, 1278, 1443, 2747, 3008
HphI GGTGA 5 cut(s) 107, 622, 662, 868, 1815
Hpy166II GTNNAC 6 cut(s) 588, 804, 1019, 2105, 2278, 2898
Hpy8I GTNNAC 6 cut(s) 588, 804, 1019, 2105, 2278, 2898
Hpy99I CGWCG 1 cut(s) 831
HpyAV CCTTC 7 cut(s) 130, 173, 447, 643, 1186, 1516, 3164
HpyCH4IV ACGT 4 cut(s) 829, 1115, 1734, 2625
HpyF10VI GCNNNNNNNGC 7 cut(s) 506, 777, 780, 1241, 1506, 3068, 3114
HpySE526I ACGT 4 cut(s) 829, 1115, 1734, 2625
HspAI GCGC 1 cut(s) 1254
Kpn2I TCCGGA 1 cut(s) 2746
KpnI GGTACC 1 cut(s) 375
Ksp22I TGATCA 2 cut(s) 2170, 2494
LmnI GCTCC 2 cut(s) 931, 1753
Lsp1109I GCAGC 8 cut(s) 521, 783, 786, 789, 792, 1469, 1626, 1796
LweI GCATC 5 cut(s) 487, 552, 1835, 2230, 2517
MaeI CTAG 7 cut(s) 132, 399, 641, 1241, 2216, 2252, 3114
MaeII ACGT 4 cut(s) 829, 1115, 1734, 2625
MaeIII GTNAC 4 cut(s) 876, 1155, 1584, 2346
MfeI CAATTG 3 cut(s) 819, 1888, 1937
MflI RGATCY 2 cut(s) 1309, 3004
MhlI GDGCHC 2 cut(s) 1442, 2988
MlsI TGGCCA 3 cut(s) 1344, 1804, 2675
MluNI TGGCCA 3 cut(s) 1344, 1804, 2675
MlyI GAGTC 4 cut(s) 283, 1097, 1163, 2403
MmeI TCCRAC 4 cut(s) 1123, 1284, 2665, 2895
Mox20I TGGCCA 3 cut(s) 1344, 1804, 2675
Mph1103I ATGCAT 1 cut(s) 2758
MroI TCCGGA 1 cut(s) 2746
MroXI GAANNNNTTC 1 cut(s) 1969
MscI TGGCCA 3 cut(s) 1344, 1804, 2675
MslI CAYNNNNRTG 1 cut(s) 1418
Msp20I TGGCCA 3 cut(s) 1344, 1804, 2675
MspA1I CMGCKG 4 cut(s) 194, 1435, 1482, 1762
MspI CCGG 6 cut(s) 614, 1023, 1278, 1443, 2747, 3008
MspR9I CCNGG 9 cut(s) 614, 615, 708, 1023, 1220, 1502, 1827, 2587, 2677
MunI CAATTG 3 cut(s) 819, 1888, 1937
Mva1269I GAATGC 3 cut(s) 1190, 1954, 2021
MvaI CCWGG 6 cut(s) 708, 1220, 1502, 1827, 2587, 2677
MwoI GCNNNNNNNGC 7 cut(s) 506, 777, 780, 1241, 1506, 3068, 3114
NciI CCSGG 3 cut(s) 614, 615, 1023
NdeI CATATG 2 cut(s) 91, 272
NlaIV GGNNCC 7 cut(s) 373, 684, 933, 1727, 1755, 1767, 2728
NmeAIII GCCGAG 1 cut(s) 1226
NmuCI GTSAC 1 cut(s) 1155
NsiI ATGCAT 1 cut(s) 2758
NspI RCATGY 3 cut(s) 70, 2464, 2743
PaeI GCATGC 1 cut(s) 70
PaeR7I CTCGAG 1 cut(s) 2556
PagI TCATGA 1 cut(s) 1912
PciI ACATGT 1 cut(s) 2739
PctI GAATGC 3 cut(s) 1190, 1954, 2021
PdmI GAANNNNTTC 1 cut(s) 1969
PfeI GAWTC 8 cut(s) 216, 863, 1055, 1207, 1382, 2480, 2550, 2582
PflMI CCANNNNNTGG 3 cut(s) 385, 1600, 1832
PkrI GCNGC 8 cut(s) 511, 773, 776, 779, 782, 1484, 1641, 1786
PleI GAGTC 4 cut(s) 283, 1096, 1162, 2403
PpsI GAGTC 4 cut(s) 283, 1096, 1162, 2403
PscI ACATGT 1 cut(s) 2739
PshBI ATTAAT 1 cut(s) 363
PsiI TTATAA 2 cut(s) 810, 2966
Psp6I CCWGG 6 cut(s) 706, 1218, 1500, 1825, 2585, 2675
PspEI GGTNACC 1 cut(s) 1584
PspFI CCCAGC 1 cut(s) 557
PspGI CCWGG 6 cut(s) 706, 1218, 1500, 1825, 2585, 2675
PspN4I GGNNCC 7 cut(s) 373, 684, 933, 1727, 1755, 1767, 2728
PspPI GGNCC 1 cut(s) 2270
PspXI VCTCGAGB 1 cut(s) 2556
PsuI RGATCY 2 cut(s) 1309, 3004
PvuII CAGCTG 2 cut(s) 194, 1482
RseI CAYNNNNRTG 1 cut(s) 1418
SatI GCNGC 8 cut(s) 510, 772, 775, 778, 781, 1483, 1640, 1785
Sau96I GGNCC 1 cut(s) 2270
SchI GAGTC 4 cut(s) 283, 1097, 1163, 2403
ScrFI CCNGG 9 cut(s) 614, 615, 708, 1023, 1220, 1502, 1827, 2587, 2677
SduI GDGCHC 2 cut(s) 1442, 2988
SfaNI GCATC 5 cut(s) 487, 552, 1835, 2230, 2517
SfcI CTRYAG 1 cut(s) 2223
Sfr274I CTCGAG 1 cut(s) 2556
SlaI CTCGAG 1 cut(s) 2556
SmaI CCCGGG 1 cut(s) 615
SmiMI CAYNNNNRTG 1 cut(s) 1418
SmlI CTYRAG 5 cut(s) 461, 1120, 1896, 2556, 2813
SmoI CTYRAG 5 cut(s) 461, 1120, 1896, 2556, 2813
SphI GCATGC 1 cut(s) 70
SsiI CCGC 4 cut(s) 1433, 1760, 1994, 2530
SspI AATATT 1 cut(s) 1049
SspMI CTAG 7 cut(s) 132, 399, 641, 1241, 2216, 2252, 3114
StyD4I CCNGG 9 cut(s) 612, 613, 706, 1021, 1218, 1500, 1825, 2585, 2675
StyI CCWWGG 3 cut(s) 293, 1579, 2875
TaiI ACGT 4 cut(s) 832, 1118, 1737, 2628
TaqI TCGA 5 cut(s) 426, 1164, 1360, 1493, 2557
TatI WGTACW 5 cut(s) 94, 1467, 1573, 1892, 2457
TfiI GAWTC 8 cut(s) 216, 863, 1055, 1207, 1382, 2480, 2550, 2582
TscAI CASTG 7 cut(s) 352, 459, 917, 950, 955, 2830, 3058
TseFI GTSAC 1 cut(s) 1155
TseI GCWGC 8 cut(s) 509, 771, 774, 777, 780, 1482, 1639, 1784
Tsp45I GTSAC 1 cut(s) 1155
TspGWI ACGGA 1 cut(s) 1463
TspMI CCCGGG 1 cut(s) 613
TspRI CASTG 7 cut(s) 352, 459, 917, 950, 955, 2830, 3058
Van91I CCANNNNNTGG 3 cut(s) 385, 1600, 1832
VspI ATTAAT 1 cut(s) 363
XagI CCTNNNNNAGG 1 cut(s) 1217
XbaI TCTAGA 1 cut(s) 398
XceI RCATGY 3 cut(s) 70, 2464, 2743
XhoI CTCGAG 1 cut(s) 2556
XmaI CCCGGG 1 cut(s) 613
XmiI GTMKAC 1 cut(s) 803
XmnI GAANNNNTTC 1 cut(s) 1969
XspI CTAG 7 cut(s) 132, 399, 641, 1241, 2216, 2252, 3114
Zsp2I ATGCAT 1 cut(s) 2758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.