FvH4_6g44260

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000412
Physical Location & Seq
Reverse (-)
34121132 .. 34122397
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44260.t1

Sequence Viewer

Length: 1266 bp
ATGTGTTATGCGAATGGCATTCTATCTTCGATCTTCTTATCATATGCACTCTTGTTGTGCTTTTCTCATCCCTTCTGCTCTGCTAGAGATACAATAACCAAAGACGATCCAATTAAAGATGATGGATCAGCGGGTCTTGTTTCAGCTGGAGGAAAATTTGAACTGGGATTCTTTTCCCTAAATGCAATAGGAAGATATGTTGGGATATGGTATCACCAACTGACTCCAATGACACTTGTATGGGTTGCCAACAGAGACAATCCACTACTTGCTAATCAAACTGGAGTTCTTGCAATTAATCGGGGTACCCTCCAACTGCTGGATAATACTTCAGGTAAGTCTTTATGGTCGGCGGAGATTAAAGTAATAGTAACACAAGCTTTCAATCGGACAGTGAAGCTCAAGGATGATGGGAACTTGGTGTTAAGCGATGAAGCAGAGTTGGGAATAGTTCTGTGGCAAAGTTTCCAAAATCCTACTGATACATTCCTCCCTGGGATGATAATGGATACAAGCTTAAATCTGACTTCATGGAGCGGCGCAGATGACCCAAGAACTGGGAACTTTACCTTTAAACTAGTTGAAGACAACCAGTATATCATCAAGAAATCAGCCACAGATTACTGGAGAAGTGGAGCACCAAATGACAATTTTTTTAGCTCAGATGAAATGCCTGCTGCAGTTGCTTACTTGTTATCAGATTTCAGCGACAGTTACTTAAAAAAAGGTTCCGGCAGGATTTTCCAACATAATGATTCTTCATACAAACAGATAGCAGTTCTGCCACGATCAGAGTACAACTCTACAAGATTGGTGATGGATTATACTGGAAAGCTGAACTGGCTTGTGCACAAACACAACTACTGGAGCCCAACATGGCTGGAGCCAATAGATAATTGCAGTGTGTATAACCCTTGTGGGTACTTTGGTCCCAGCTGTAACAGTACTAATAGTCCAATATGCAAGTGTTTGCATGGTTTCAAGCCCCAGCTTCCAAATAAATGGGACCTTGGAGATTTTTCTGGTGGATGCATTAGAGAGTCCAACTTATGTGCTACCACAGCTACGAATGATACATTCTTCAGTTTGAAGGTGAAGAAAGTCCAAAAGCCAGACTCAGAGACCTCTGCTGCCAATGAAACAGAATGCAGGAACAAGTGCTTCAACGACTGCAAGTGCGTGGCTTACTCATACGTTGATACGTTGATAGTGAAATCAGAAATCGGGCTACTACTCGTTCGTGTTTCACATGGGCTTCGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

422

Amino Acids

46.89

Weight (kDa)

6.18

Isoelectric Point (pI)

21.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 78 - 173 3.3e-24 D-mannose binding lectin
S_locus_glycop PF00954 209 - 330 7.6e-16 S-locus glycoprotein domain
PAN_2 PF08276 351 - 401 2.1e-08 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230
fragaria_vesca FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44244 FvH4_6g44245 FvH4_6g44245 FvH4_6g44260
malus_domestica MD04G1084700.v1.1 MD09G1099700.v1.1 MD09G1099800.v1.1 MD09G1099900.v1.1 MD09G1100000.v1.1 MD09G1100100.v1.1 MD17G1087900.v1.1
prunus_persica Prupe.3G226000_v2.0.a1 Prupe.3G226200_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226600_v2.0.a1 Prupe.3G226700_v2.0.a1
pyrus_communis pycom02g23070 pycom07g15320 pycom09g02310 pycom09g02330 pycom09g02340 pycom09g02350 pycom09g02360 pycom09g02400 pycom09g02410 pycom09g02430 pycom10g07020 pycom17g08490
rosa_chinensis RchiOBHm_Chr1g0328701 RchiOBHm_Chr2g0161021 RchiOBHm_Chr2g0161031 RchiOBHm_Chr2g0161081 RchiOBHm_Chr2g0161101
rosa_laevigata RLG00000021249 RLG00000021250 RLG00000021251 RLG00000021253 RLG00000021257 RLG00000029922
rosa_multiflora Rmu_sc0000955.1_g000023 Rmu_sc0000955.1_g000025 Rmu_sc0000955.1_g000041 Rmu_sc0002312.1_g000012 Rmu_sc0002481.1_g000021 Rmu_sc0002481.1_g000026 Rmu_sc0002481.1_g000028 Rmu_sc0002481.1_g000039 Rmu_sc0006420.1_g000017
rosa_roxburghii Rroxscaffold_2G00089160 Rroxscaffold_2G00089200 Rroxscaffold_2G00089220 Rroxscaffold_2G00089270 Rroxscaffold_2G00089300 Rroxscaffold_4G00321430
rosa_rugosa Rorug02G0485900 Rorug02G0486100 Rorug03G0345100
rosa_samantha Rh1AG094100 Rh1DG097200 Rh2AG552000 Rh2AG552100 Rh2AG552200 Rh2AG552300 Rh2AG552500 Rh2BG566400 Rh2BG566500 Rh2CG535800 Rh2CG535900 Rh2CG536100 Rh2CG536200 Rh2DG575000 Rh2DG575100 Rh2DG575400 Rh2DG575500 Rh2DG575600 Rh4AG077200 Rh4CG082400
rosa_wichuraiana Rw2G045690 Rw2G045700 Rw2G045710 Rw4G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 305
AccB1I GGYRCC 1 cut(s) 305
AccB7I CCANNNNNTGG 2 cut(s) 319, 557
AccBSI CCGCTC 1 cut(s) 537
AciI CCGC 3 cut(s) 131, 353, 537
AclWI GGATC 2 cut(s) 101, 133
AcsI RAATTY 1 cut(s) 155
AcuI CTGAAG 2 cut(s) 315, 1066
AfaI GTAC 4 cut(s) 307, 797, 923, 946
AfiI CCNNNNNNNGG 2 cut(s) 319, 557
AgsI TTSAA 6 cut(s) 161, 385, 584, 982, 1090, 1165
AhlI ACTAGT 1 cut(s) 577
AjnI CCWGG 1 cut(s) 493
AluBI AGCT 9 cut(s) 146, 380, 400, 516, 660, 835, 936, 991, 1064
AluI AGCT 9 cut(s) 146, 380, 400, 516, 660, 835, 936, 991, 1064
Alw21I GWGCWC 2 cut(s) 640, 852
Alw26I GTCTC 2 cut(s) 249, 1115
Alw44I GTGCAC 1 cut(s) 848
AlwI GGATC 2 cut(s) 101, 133
ApaLI GTGCAC 1 cut(s) 848
ApeKI GCWGC 2 cut(s) 677, 1130
ApoI RAATTY 1 cut(s) 155
AseI ATTAAT 1 cut(s) 297
Asp718I GGTACC 1 cut(s) 305
AspLEI GCGC 1 cut(s) 542
AspS9I GGNCC 2 cut(s) 929, 1006
AsuHPI GGTGA 3 cut(s) 206, 826, 1105
AvaII GGWCC 2 cut(s) 929, 1006
BaeGI GKGCMC 1 cut(s) 852
BaeI ACNNNNGTAYC 2 cut(s) 913, 946
BanI GGYRCC 1 cut(s) 305
BanII GRGCYC 1 cut(s) 872
BbsI GAAGAC 1 cut(s) 591
Bbv12I GWGCWC 2 cut(s) 640, 852
BbvI GCAGC 2 cut(s) 664, 1117
BccI CCATC 3 cut(s) 116, 404, 811
BciT130I CCWGG 1 cut(s) 495
BciVI GTATCC 1 cut(s) 502
BcoDI GTCTC 2 cut(s) 249, 1115
BcuI ACTAGT 1 cut(s) 577
BfaI CTAG 2 cut(s) 84, 578
BfmI CTRYAG 1 cut(s) 678
BfuI GTATCC 1 cut(s) 502
BisI GCNGC 3 cut(s) 538, 678, 1131
BlsI GCNGC 3 cut(s) 539, 679, 1132
BmcAI AGTACT 1 cut(s) 946
Bme1390I CCNGG 1 cut(s) 495
Bme18I GGWCC 2 cut(s) 929, 1006
BmgT120I GGNCC 2 cut(s) 929, 1006
BmiI GGNNCC 6 cut(s) 307, 730, 869, 885, 931, 1007
BmrFI CCNGG 1 cut(s) 495
BmrI ACTGGG 2 cut(s) 173, 567
BmsI GCATC 1 cut(s) 1019
BmuI ACTGGG 2 cut(s) 173, 567
BpiI GAAGAC 1 cut(s) 591
BplI GAGNNNNNCTC 2 cut(s) 785, 817
BpmI CTGGAG 5 cut(s) 168, 303, 646, 886, 902
BpuEI CTTGAG 1 cut(s) 386
BsaI GGTCTC 1 cut(s) 1115
BsaJI CCNNGG 3 cut(s) 493, 494, 1009
Bsc4I CCNNNNNNNGG 2 cut(s) 319, 557
Bse1I ACTGG 8 cut(s) 168, 286, 562, 592, 629, 832, 845, 869
BseBI CCWGG 1 cut(s) 495
BseDI CCNNGG 3 cut(s) 493, 494, 1009
BseGI GGATG 4 cut(s) 67, 412, 504, 1034
BseLI CCNNNNNNNGG 2 cut(s) 319, 557
BseMII CTCAG 2 cut(s) 675, 1131
BseNI ACTGG 8 cut(s) 168, 286, 562, 592, 629, 832, 845, 869
BseSI GKGCMC 1 cut(s) 852
BseXI GCAGC 2 cut(s) 664, 1117
BseYI CCCAGC 2 cut(s) 932, 987
BshNI GGYRCC 1 cut(s) 305
BsiHKAI GWGCWC 2 cut(s) 640, 852
BsiSI CCGG 1 cut(s) 732
BslFI GGGAC 2 cut(s) 915, 1019
BslI CCNNNNNNNGG 2 cut(s) 319, 557
BsmAI GTCTC 2 cut(s) 249, 1115
BsmFI GGGAC 2 cut(s) 915, 1019
BsmI GAATGC 2 cut(s) 18, 1151
Bso31I GGTCTC 1 cut(s) 1115
Bsp1286I GDGCHC 3 cut(s) 640, 852, 872
Bsp143I GATC 4 cut(s) 30, 106, 125, 788
BspACI CCGC 3 cut(s) 131, 353, 537
BspCNI CTCAG 2 cut(s) 674, 1130
BspLI GGNNCC 6 cut(s) 307, 730, 869, 885, 931, 1007
BspMAI CTGCAG 1 cut(s) 682
BspPI GGATC 2 cut(s) 101, 133
BspT107I GGYRCC 1 cut(s) 305
BspTNI GGTCTC 1 cut(s) 1115
BsrBI CCGCTC 1 cut(s) 537
BsrI ACTGG 8 cut(s) 168, 286, 562, 592, 629, 832, 845, 869
BssECI CCNNGG 3 cut(s) 493, 494, 1009
BssMI GATC 4 cut(s) 30, 106, 125, 788
BssT1I CCWWGG 1 cut(s) 1009
Bst2UI CCWGG 1 cut(s) 495
Bst4CI ACNGT 3 cut(s) 394, 713, 944
BstC8I GCNNGC 1 cut(s) 675
BstDEI CTNAG 2 cut(s) 661, 1117
BstF5I GGATG 4 cut(s) 67, 412, 504, 1034
BstHHI GCGC 1 cut(s) 542
BstKTI GATC 4 cut(s) 33, 109, 128, 791
BstMAI GTCTC 2 cut(s) 249, 1115
BstMBI GATC 4 cut(s) 30, 106, 125, 788
BstMWI GCNNNNNNNGC 3 cut(s) 683, 841, 1061
BstNI CCWGG 1 cut(s) 495
BstSCI CCNGG 1 cut(s) 493
BstSFI CTRYAG 1 cut(s) 678
BstSLI GKGCMC 1 cut(s) 852
BstV1I GCAGC 2 cut(s) 664, 1117
BstV2I GAAGAC 1 cut(s) 591
BstXI CCANNNNNNTGG 1 cut(s) 1002
BsuI GTATCC 1 cut(s) 502
BtgZI GCGATG 1 cut(s) 444
BtsCI GGATG 4 cut(s) 67, 412, 504, 1034
BtsI GCAGTG 1 cut(s) 907
BtsIMutI CAGTG 2 cut(s) 399, 907
Cac8I GCNNGC 1 cut(s) 675
CfoI GCGC 1 cut(s) 542
Cfr13I GGNCC 2 cut(s) 929, 1006
Csp6I GTAC 4 cut(s) 306, 796, 922, 945
CviAII CATG 4 cut(s) 531, 876, 974, 1250
CviQI GTAC 4 cut(s) 306, 796, 922, 945
DdeI CTNAG 2 cut(s) 661, 1117
DpnI GATC 4 cut(s) 32, 108, 127, 790
DpnII GATC 4 cut(s) 30, 106, 125, 788
DraI TTTAAA 1 cut(s) 574
EciI GGCGGA 1 cut(s) 368
Eco130I CCWWGG 1 cut(s) 1009
Eco24I GRGCYC 1 cut(s) 872
Eco31I GGTCTC 1 cut(s) 1115
Eco47I GGWCC 2 cut(s) 929, 1006
Eco57I CTGAAG 2 cut(s) 315, 1066
EcoO109I RGGNCCY 1 cut(s) 1006
EcoRII CCWGG 1 cut(s) 493
EcoT14I CCWWGG 1 cut(s) 1009
EcoT22I ATGCAT 1 cut(s) 1034
EcoT38I GRGCYC 1 cut(s) 872
ErhI CCWWGG 1 cut(s) 1009
FaeI CATG 4 cut(s) 534, 879, 977, 1253
FaqI GGGAC 2 cut(s) 915, 1019
FatI CATG 4 cut(s) 530, 875, 973, 1249
FauI CCCGC 1 cut(s) 124
FauNDI CATATG 1 cut(s) 43
Fnu4HI GCNGC 3 cut(s) 538, 678, 1131
FokI GGATG 4 cut(s) 54, 419, 511, 1041
FriOI GRGCYC 1 cut(s) 872
Fsp4HI GCNGC 3 cut(s) 538, 678, 1131
FspBI CTAG 2 cut(s) 84, 578
GlaI GCGC 1 cut(s) 541
GluI GCNGC 3 cut(s) 538, 678, 1131
GsaI CCCAGC 2 cut(s) 936, 991
GsuI CTGGAG 5 cut(s) 168, 303, 646, 886, 902
HapII CCGG 1 cut(s) 732
HhaI GCGC 1 cut(s) 542
Hin1II CATG 4 cut(s) 534, 879, 977, 1253
Hin6I GCGC 1 cut(s) 540
HinP1I GCGC 1 cut(s) 540
HindIII AAGCTT 2 cut(s) 378, 514
HinfI GANTC 5 cut(s) 168, 223, 755, 1040, 1115
HpaII CCGG 1 cut(s) 732
HphI GGTGA 3 cut(s) 206, 826, 1105
Hpy166II GTNNAC 1 cut(s) 850
Hpy188I TCNGA 8 cut(s) 390, 525, 664, 700, 793, 1120, 1219, 1260
Hpy188III TCNNGA 1 cut(s) 604
Hpy8I GTNNAC 1 cut(s) 850
HpyAV CCTTC 2 cut(s) 82, 1084
HpyCH4III ACNGT 3 cut(s) 394, 713, 944
HpyCH4IV ACGT 2 cut(s) 1194, 1202
HpyF10VI GCNNNNNNNGC 3 cut(s) 683, 841, 1061
HpyF3I CTNAG 2 cut(s) 661, 1117
HpySE526I ACGT 2 cut(s) 1194, 1202
Hsp92II CATG 4 cut(s) 534, 879, 977, 1253
HspAI GCGC 1 cut(s) 540
KpnI GGTACC 1 cut(s) 309
Kzo9I GATC 4 cut(s) 30, 106, 125, 788
LmnI GCTCC 4 cut(s) 534, 635, 867, 883
Lsp1109I GCAGC 2 cut(s) 664, 1117
LweI GCATC 1 cut(s) 1019
MaeI CTAG 2 cut(s) 84, 578
MaeII ACGT 2 cut(s) 1194, 1202
MaeIII GTNAC 3 cut(s) 370, 713, 938
MalI GATC 4 cut(s) 32, 108, 127, 790
MbiI CCGCTC 1 cut(s) 537
MboI GATC 4 cut(s) 30, 106, 125, 788
MboII GAAGA 7 cut(s) 18, 25, 204, 596, 750, 1072, 1108
MhlI GDGCHC 3 cut(s) 640, 852, 872
MluCI AATT 5 cut(s) 111, 155, 294, 649, 895
MlyI GAGTC 3 cut(s) 217, 1049, 1109
MmeI TCCRAC 3 cut(s) 337, 769, 1068
MnlI CCTC 4 cut(s) 143, 320, 500, 1135
Mph1103I ATGCAT 1 cut(s) 1034
MseI TTAA 7 cut(s) 114, 297, 360, 425, 518, 573, 719
MslI CAYNNNNRTG 1 cut(s) 238
MspA1I CMGCKG 3 cut(s) 131, 146, 936
MspI CCGG 1 cut(s) 732
MspR9I CCNGG 1 cut(s) 495
Mva1269I GAATGC 2 cut(s) 18, 1151
MvaI CCWGG 1 cut(s) 495
MwoI GCNNNNNNNGC 3 cut(s) 683, 841, 1061
NdeI CATATG 1 cut(s) 43
NdeII GATC 4 cut(s) 30, 106, 125, 788
NlaIII CATG 4 cut(s) 534, 879, 977, 1253
NlaIV GGNNCC 6 cut(s) 307, 730, 869, 885, 931, 1007
NsiI ATGCAT 1 cut(s) 1034
PasI CCCWGGG 1 cut(s) 494
PctI GAATGC 2 cut(s) 18, 1151
PfeI GAWTC 2 cut(s) 168, 755
PflMI CCANNNNNTGG 2 cut(s) 319, 557
PkrI GCNGC 3 cut(s) 539, 679, 1132
PleI GAGTC 3 cut(s) 217, 1048, 1109
PpsI GAGTC 3 cut(s) 217, 1048, 1109
PpuMI RGGWCCY 1 cut(s) 1006
PshBI ATTAAT 1 cut(s) 297
Psp5II RGGWCCY 1 cut(s) 1006
Psp6I CCWGG 1 cut(s) 493
PspFI CCCAGC 2 cut(s) 932, 987
PspGI CCWGG 1 cut(s) 493
PspN4I GGNNCC 6 cut(s) 307, 730, 869, 885, 931, 1007
PspPI GGNCC 2 cut(s) 929, 1006
PspPPI RGGWCCY 1 cut(s) 1006
PstI CTGCAG 1 cut(s) 682
PvuII CAGCTG 2 cut(s) 146, 936
RsaI GTAC 4 cut(s) 307, 797, 923, 946
RsaNI GTAC 4 cut(s) 306, 796, 922, 945
RseI CAYNNNNRTG 1 cut(s) 238
SaqAI TTAA 7 cut(s) 114, 297, 360, 425, 518, 573, 719
SatI GCNGC 3 cut(s) 538, 678, 1131
Sau3AI GATC 4 cut(s) 30, 106, 125, 788
Sau96I GGNCC 2 cut(s) 929, 1006
ScaI AGTACT 1 cut(s) 946
SchI GAGTC 3 cut(s) 217, 1049, 1109
ScrFI CCNGG 1 cut(s) 495
SduI GDGCHC 3 cut(s) 640, 852, 872
SfaNI GCATC 1 cut(s) 1019
SfcI CTRYAG 1 cut(s) 678
SinI GGWCC 2 cut(s) 929, 1006
SmiMI CAYNNNNRTG 1 cut(s) 238
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
SpeI ACTAGT 1 cut(s) 577
Sse9I AATT 5 cut(s) 111, 155, 294, 649, 895
SsiI CCGC 3 cut(s) 131, 353, 537
SspMI CTAG 2 cut(s) 84, 578
StyD4I CCNGG 1 cut(s) 493
StyI CCWWGG 1 cut(s) 1009
TaaI ACNGT 3 cut(s) 394, 713, 944
TaiI ACGT 2 cut(s) 1197, 1205
TaqI TCGA 1 cut(s) 29
TasI AATT 5 cut(s) 111, 155, 294, 649, 895
TatI WGTACW 2 cut(s) 795, 944
TauI GCSGC 1 cut(s) 540
TfiI GAWTC 2 cut(s) 168, 755
Tru1I TTAA 7 cut(s) 114, 297, 360, 425, 518, 573, 719
Tru9I TTAA 7 cut(s) 114, 297, 360, 425, 518, 573, 719
TscAI CASTG 2 cut(s) 399, 907
TseI GCWGC 2 cut(s) 677, 1130
TspDTI ATGAA 5 cut(s) 447, 519, 681, 750, 1152
TspRI CASTG 2 cut(s) 399, 907
Van91I CCANNNNNTGG 2 cut(s) 319, 557
VneI GTGCAC 1 cut(s) 848
VpaK11BI GGWCC 2 cut(s) 929, 1006
VspI ATTAAT 1 cut(s) 297
XapI RAATTY 1 cut(s) 155
XspI CTAG 2 cut(s) 84, 578
ZrmI AGTACT 1 cut(s) 946
Zsp2I ATGCAT 1 cut(s) 1034
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.