RchiOBHm_Chr2g0161031

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000412
Physical Location & Seq
Reverse (-)
76889440 .. 76893947
4508 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52941

Sequence Viewer

Length: 3084 bp
ATGGTATCTAACATCTTCCTCTTGTATGTAGTACTATTGCTTTGCTGTTATGATTACCTATTTTGTTCTGCAAGAGATACACTGACACATGCCGATCCAGTTATTGATGAGGAATCAGGAACTCTTGTTTCAGCAGGAGAAAAATTTGAATTGGGTTTCTTTACCCCTACTCCTATAGGGAAAAGTAACTCGGGCGGGGGCGCTGATAGCAGATATGTTGGCATATGGTATTATAAGGTCACTCCAAGAACAGTTGTATGGGTTGCCAACAGAGATGAACCTCTGCCTGCCAATTCCACTGGAGTTCTCACAATCGAAGGTGGTAACCTCCTCGTGTTGGATAATGTTACTGGAGAGCGTTATTGGTCCACAGACATTGGAACATCTTCGTCTTCTAACATGACTGTGCAGATAATGGAGTCTGGAAACCTGGTGTTAATGGATTATGATCAGATGGCAGCGAATATTCTGTGGCAGAGCTTTCAAAACCCAACTGATACATTCATTCCTGGGATGCTAATGGATAAAAATCTTCAGTTGACTTCTTGGAGAGACAAAGATGACCCGAGACCGGGGAACTTCAACTTCAAACTCGATCAGAGTAAGAACCAGTATATCGTAATGAACAAGTCGCTTCCTTACTGGAAAAGTGGAGAGCCAGATAATCGTTTCAGCCCATATGAAGTGCCTCCTAAAGTAACTGGCTTGCTATCATATTTCAGCAACAGCAGCAGCACTGATACAAGTCGACCATCTATTAATTTTACAATTGTGCGACCTTTGGATTACAATTATGCACGGTTGGTGATAGATTTTACTGGAGAGTTACAGTTTTCCACTTGGAATGAAAACAAGAAGGAGTGGTTTCCTTCATGGTCGGAGCCAAAAGATAATTGTAGTAAGTTCAACCTTTGTGGAAGTTTTGGCAGCTGCAATAATAATAATCGGCCTTGGCTATGCAAATGTTTGCCTGGTTTCAAGCCCAGGTCCCCAGATAATTGGAATTCTGAAGATTTTTCAGGTGGATGTGATAGAGAGTCATCAATCTCTGACAACAACAGCACGTTCTTGAGCTTAAAGATGATGAAAGTTGGAGAGGCAGAGTCACCGTTCGATGTGGGCAGCGAAACAGAATGCAGGAAGGAGTGCCTAAAGAACCCCCAGTGCCAGGCTTACTCGTATGCCGTTCTAGCTGAAGACAGAGCTCAAAGGGGTACTAATACTACTACCAGCACTTCCTCGAAGTGCTGGACATGGTTGGAAGATTTAAAGAATCTTGTAGAAGAGTATGACAGTGGCCACAATATCACTGTTCGAGTTGCCTCGTCTGATATAGAATCTACTGTAAGAGGCTGCCAGCCTTGTGGCACAACGATGATACCTTATCCCCTGAGCACCGGTCGGGACTGTGGTGATCCCATGTACTTCCGTTTCATCTGCAACACTTTGACAGGCCAGGTTAGCTTCGTGGGACTGAATGACACCTTTCGAGTTATAAGCATCGAACCAAGTATGCAAAAATTTGTACTCAAATGGTTGCCAGCCAAAAAGGTCGATGAGTGTGATTCTAGATACAGAGCCAAAACCCTGGAGCTCAATGCATCGTTCCCATTTAAGATAAGTAGTTGGGGGTGCGATGCTGACCTTGGAGACTATTATGTAGTAGAGTTGGGTTGGAAACTACCGCCGGAACCAGCCTGCAATACATCAGCAGACTGCAAGGGTTGGCCAAATTCAACCTGCAAGCCAGCAAGAGATGGAATGAAAAGATGCCTTTGTAACAAAAGTTTCCAATGGAATGTCACTTACTTCAATTGTACTCAAGAAGGTAGTCTTCATGAGCCATCAAACTCTCCATCGTCATCGGTCTTAGGAGAGCATTCAAGCAGAAAAGTTACATTCTATCTGATAATTGTGGCGGTGCTTATAAGCATGATTTTACTGGCATGCGTCATTTCTATTTATATATGGAGAAGAAAAATGACCAGAAAACAAGATCAAATAAGTCGTGCACAGTTTGATAGTGAAAGACGAGTCAAGGAGTTGATAGACACAAGTGAGTTCAACGAAGAAGATGAGAAAGGTATAGATGTACCCTTTTTTGATTTGCAAAGCATACTGGAAGCCACAGATAATTTCTCAGATGCTAACAAGCTAGGACAAGGGGGTTATGGGCCTGTTTACAAGGGGAAGTTCTTTGGAGGTCAAGAAATTGCAGTAAAGAGGCTATCAAAAGTTTCAGGACAAGGGTTACAGGAATTTAGGAATGAGGTCGTGCTGATTGCCAAACTTCAGCACCGAAATCTTGTTAGACTCAGAGGATATTGCATGAAAGGAGAAGAAAAGATTTTACTTTATGAGTACATGCCCAACAAAAGCTTAGATTCCTTTATATTTGATCATACACAAAACGTATTTCTCAATTGGGAGATGCGGTTTAACATCATTTTGGGAATAGCTCGAGGACTTCTCTATCTTCATCAAGATTCCAGGTTGAGGATTATTCATAGAGATTTGAAAACCAGCAACGTACTTTTGGATGAGGAGATGAACCCCAAAATATCTGACTTCGGCTTGGCCAGGATTGTTGGAGGCAAAGAAACCGAGGCAAACACAAACACAGTAGTAGGAACCTATGGCTACATGTCTCCGGAATATGCACTAGATGGAACTTTTTCAGTCAAATCAGATGTCTTTAGTTTTGGTGTGGTTCTTCTTGAGATAATCAGTGGAAAAAAGAATGCAGGATTCTTTCAGTCCAAACAAACTTTCAGCCTCCTTGGTTATGCATGGGAACTCTGGACAGGAGACAAGGTGTTGGATTTAATGGACAAGAATTTGGAAGAAAGTTGCAACAGAAGTGAATTTGTAAGGTGTGTAAATGTTGGGCTCTTATGCGTACAAGAAGATCCGGTTGATCGCCCTACAATGTCAAATGTTATTACCTTGCTTGACAGTGAAACTGCAATCCCTGCAACTCCTAAACAACCAGCCTTTTTCATAAGGAGAGGCAACTCTAGCACAGCTTCCTCTTCTACTAAGCCAGAGACAGTTTCTGAAATAACTGCTCTGGAAGGCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

1027

Amino Acids

115.69

Weight (kDa)

5.33

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 84 - 179 1.8e-25 D-mannose binding lectin
S_locus_glycop PF00954 238 - 329 3.2e-20 S-locus glycoprotein domain
PAN_2 PF08276 351 - 425 1.9e-07 PAN-like domain
Pkinase PF00069 714 - 979 5.2e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 717 - 982 1.9e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230
fragaria_vesca FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44244 FvH4_6g44245 FvH4_6g44245 FvH4_6g44260
malus_domestica MD04G1084700.v1.1 MD09G1099700.v1.1 MD09G1099800.v1.1 MD09G1099900.v1.1 MD09G1100000.v1.1 MD09G1100100.v1.1 MD17G1087900.v1.1
prunus_persica Prupe.3G226000_v2.0.a1 Prupe.3G226200_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226600_v2.0.a1 Prupe.3G226700_v2.0.a1
pyrus_communis pycom02g23070 pycom07g15320 pycom09g02310 pycom09g02330 pycom09g02340 pycom09g02350 pycom09g02360 pycom09g02400 pycom09g02410 pycom09g02430 pycom10g07020 pycom17g08490
rosa_chinensis RchiOBHm_Chr1g0328701 RchiOBHm_Chr2g0161021 RchiOBHm_Chr2g0161031 RchiOBHm_Chr2g0161081 RchiOBHm_Chr2g0161101
rosa_laevigata RLG00000021249 RLG00000021250 RLG00000021251 RLG00000021253 RLG00000021257 RLG00000029922
rosa_multiflora Rmu_sc0000955.1_g000023 Rmu_sc0000955.1_g000025 Rmu_sc0000955.1_g000041 Rmu_sc0002312.1_g000012 Rmu_sc0002481.1_g000021 Rmu_sc0002481.1_g000026 Rmu_sc0002481.1_g000028 Rmu_sc0002481.1_g000039 Rmu_sc0006420.1_g000017
rosa_roxburghii Rroxscaffold_2G00089160 Rroxscaffold_2G00089200 Rroxscaffold_2G00089220 Rroxscaffold_2G00089270 Rroxscaffold_2G00089300 Rroxscaffold_4G00321430
rosa_rugosa Rorug02G0485900 Rorug02G0486100 Rorug03G0345100
rosa_samantha Rh1AG094100 Rh1DG097200 Rh2AG552000 Rh2AG552100 Rh2AG552200 Rh2AG552300 Rh2AG552500 Rh2BG566400 Rh2BG566500 Rh2CG535800 Rh2CG535900 Rh2CG536100 Rh2CG536200 Rh2DG575000 Rh2DG575100 Rh2DG575400 Rh2DG575500 Rh2DG575600 Rh4AG077200 Rh4CG082400
rosa_wichuraiana Rw2G045690 Rw2G045700 Rw2G045710 Rw4G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 234, 1496, 1928
Acc36I ACCTGC 1 cut(s) 1748
AccI GTMKAC 1 cut(s) 748
AccIII TCCGGA 1 cut(s) 2650
AciI CCGC 4 cut(s) 195, 1685, 1919, 2434
AclWI GGATC 3 cut(s) 89, 1409, 2903
AcoI YGGCCR 3 cut(s) 1297, 1727, 2577
AcsI RAATTY 7 cut(s) 143, 1003, 1520, 1732, 2258, 2836, 2864
AcuI CTGAAG 4 cut(s) 518, 1029, 1215, 2276
AfaI GTAC 9 cut(s) 33, 1216, 1424, 1527, 1819, 2094, 2363, 2532, 2901
AfiI CCNNNNNNNGG 5 cut(s) 337, 571, 572, 1168, 2496
AflIII ACRYGT 1 cut(s) 2643
AgeI ACCGGT 1 cut(s) 1397
AjnI CCWGG 9 cut(s) 429, 508, 970, 983, 1167, 1455, 1587, 2489, 2579
AjuI GAANNNNNNNTTGG 2 cut(s) 2753, 2785
Alw21I GWGCWC 4 cut(s) 1207, 1397, 1596, 2014
Alw26I GTCTC 6 cut(s) 546, 562, 1644, 2652, 2802, 3041
Alw44I GTGCAC 1 cut(s) 2010
AlwI GGATC 3 cut(s) 89, 1409, 2903
AlwNI CAGNNNCTG 1 cut(s) 3056
Ama87I CYCGRG 3 cut(s) 190, 565, 2460
Aor13HI TCCGGA 1 cut(s) 2650
AoxI GGCC 6 cut(s) 947, 1297, 1453, 1727, 2174, 2577
ApaLI GTGCAC 1 cut(s) 2010
ApeKI GCWGC 7 cut(s) 458, 729, 732, 927, 930, 1122, 1353
ApoI RAATTY 7 cut(s) 143, 1003, 1520, 1732, 2258, 2836, 2864
ArsI GACNNNNNNTTYG 2 cut(s) 2676, 2708
AseI ATTAAT 1 cut(s) 759
AsiGI ACCGGT 1 cut(s) 1397
Asp700I GAANNNNTTC 2 cut(s) 385, 2674
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 3 cut(s) 366, 987, 2174
AsuC2I CCSGG 1 cut(s) 573
AsuHPI GGTGA 3 cut(s) 817, 1098, 1424
AvaI CYCGRG 3 cut(s) 190, 565, 2460
AvaII GGWCC 2 cut(s) 366, 987
BaeGI GKGCMC 1 cut(s) 2014
BalI TGGCCA 3 cut(s) 1299, 1729, 2579
BanII GRGCYC 3 cut(s) 1207, 1596, 2892
BauI CACGAG 1 cut(s) 332
BbsI GAAGAC 3 cut(s) 384, 1203, 1826
Bbv12I GWGCWC 4 cut(s) 1207, 1397, 1596, 2014
BbvI GCAGC 7 cut(s) 470, 741, 744, 917, 939, 1134, 1340
BccI CCATC 6 cut(s) 448, 760, 1751, 1852, 1864, 2660
BceAI ACGGC 1 cut(s) 1169
BciT130I CCWGG 9 cut(s) 431, 510, 972, 985, 1169, 1457, 1589, 2491, 2581
BclI TGATCA 2 cut(s) 448, 2398
BcnI CCSGG 1 cut(s) 573
BcoDI GTCTC 6 cut(s) 546, 562, 1644, 2652, 2802, 3041
BfaI CTAG 5 cut(s) 1190, 1569, 2156, 2663, 3018
BfmI CTRYAG 1 cut(s) 174
BfoI RGCGCY 1 cut(s) 204
BfuAI ACCTGC 1 cut(s) 1748
BisI GCNGC 7 cut(s) 459, 730, 733, 928, 931, 1123, 1354
BlsI GCNGC 7 cut(s) 460, 731, 734, 929, 932, 1124, 1355
BmcAI AGTACT 1 cut(s) 33
Bme18I GGWCC 2 cut(s) 366, 987
BmeT110I CYCGRG 3 cut(s) 190, 565, 2460
BmgT120I GGNCC 3 cut(s) 366, 987, 2174
BmiI GGNNCC 4 cut(s) 882, 989, 1692, 2632
BmrI ACTGGG 1 cut(s) 1156
BmsI GCATC 7 cut(s) 504, 1509, 1610, 1627, 1760, 2134, 2421
BmuI ACTGGG 1 cut(s) 1156
BpiI GAAGAC 3 cut(s) 384, 1203, 1826
BplI GAGNNNNNCTC 2 cut(s) 2454, 2486
BpmI CTGGAG 4 cut(s) 321, 372, 840, 1610
Bpu10I CCTNAGC 1 cut(s) 1391
BpuEI CTTGAG 3 cut(s) 1090, 1806, 2738
BpuMI CCSGG 1 cut(s) 573
BsaBI GATNNNNATC 2 cut(s) 447, 528
BsaI GGTCTC 1 cut(s) 562
BsaJI CCNNGG 8 cut(s) 509, 572, 950, 983, 1587, 1645, 2604, 2779
BsaWI WCCGGW 3 cut(s) 1397, 2650, 2911
BsaXI ACNNNNNCTCC 6 cut(s) 154, 184, 2420, 2450, 2799, 2829
Bsc4I CCNNNNNNNGG 5 cut(s) 337, 571, 572, 1168, 2496
Bse118I RCCGGY 1 cut(s) 1397
Bse8I GATNNNNATC 2 cut(s) 447, 528
BseAI TCCGGA 1 cut(s) 2650
BseBI CCWGG 9 cut(s) 431, 510, 972, 985, 1169, 1457, 1589, 2491, 2581
BseDI CCNNGG 8 cut(s) 509, 572, 950, 983, 1587, 1645, 2604, 2779
BseGI GGATG 3 cut(s) 519, 1031, 2545
BseJI GATNNNNATC 2 cut(s) 447, 528
BseLI CCNNNNNNNGG 5 cut(s) 337, 571, 572, 1168, 2496
BseMII CTCAG 3 cut(s) 1382, 2154, 2329
BseRI GAGGAG 2 cut(s) 320, 2558
BseSI GKGCMC 1 cut(s) 2014
BseXI GCAGC 7 cut(s) 470, 741, 744, 917, 939, 1134, 1340
BsgI GTGCAG 1 cut(s) 428
Bsh1285I CGRYCG 1 cut(s) 1402
BshFI GGCC 6 cut(s) 949, 1299, 1455, 1729, 2176, 2579
BshTI ACCGGT 1 cut(s) 1397
BsiEI CGRYCG 1 cut(s) 1402
BsiHKAI GWGCWC 4 cut(s) 1207, 1397, 1596, 2014
BsiHKCI CYCGRG 3 cut(s) 190, 565, 2460
BsiSI CCGG 5 cut(s) 572, 1398, 1688, 2651, 2912
BslFI GGGAC 3 cut(s) 973, 1418, 1485
BslI CCNNNNNNNGG 5 cut(s) 337, 571, 572, 1168, 2496
BsmAI GTCTC 6 cut(s) 546, 562, 1644, 2652, 2802, 3041
BsmFI GGGAC 3 cut(s) 973, 1418, 1485
BsmI GAATGC 3 cut(s) 1139, 1879, 2746
BsnI GGCC 6 cut(s) 949, 1299, 1455, 1729, 2176, 2579
Bso31I GGTCTC 1 cut(s) 562
BsoBI CYCGRG 3 cut(s) 190, 565, 2460
Bsp1286I GDGCHC 5 cut(s) 1207, 1397, 1596, 2014, 2892
Bsp13I TCCGGA 1 cut(s) 2650
Bsp143I GATC 8 cut(s) 94, 448, 595, 1414, 1996, 2398, 2908, 2917
BspACI CCGC 4 cut(s) 195, 1685, 1919, 2434
BspANI GGCC 6 cut(s) 949, 1299, 1455, 1729, 2176, 2579
BspCNI CTCAG 3 cut(s) 1383, 2153, 2328
BspEI TCCGGA 1 cut(s) 2650
BspHI TCATGA 1 cut(s) 1837
BspLI GGNNCC 4 cut(s) 882, 989, 1692, 2632
BspMI ACCTGC 1 cut(s) 1748
BspPI GGATC 3 cut(s) 89, 1409, 2903
BspTNI GGTCTC 1 cut(s) 562
BsrFI RCCGGY 1 cut(s) 1397
BssAI RCCGGY 1 cut(s) 1397
BssECI CCNNGG 8 cut(s) 509, 572, 950, 983, 1587, 1645, 2604, 2779
BssMI GATC 8 cut(s) 94, 448, 595, 1414, 1996, 2398, 2908, 2917
BssSI CACGAG 1 cut(s) 332
BssT1I CCWWGG 3 cut(s) 950, 1645, 2779
Bst2BI CACGAG 1 cut(s) 332
Bst2UI CCWGG 9 cut(s) 431, 510, 972, 985, 1169, 1457, 1589, 2491, 2581
Bst6I CTCTTC 2 cut(s) 1278, 3037
BstAPI GCANNNNNTGC 1 cut(s) 2972
BstC8I GCNNGC 8 cut(s) 288, 707, 1358, 1542, 1699, 1745, 1749, 1948
BstDEI CTNAG 6 cut(s) 1391, 1870, 2140, 2315, 2380, 3039
BstEII GGTNACC 1 cut(s) 323
BstF5I GGATG 3 cut(s) 519, 1031, 2545
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 8 cut(s) 97, 451, 598, 1417, 1999, 2401, 2911, 2920
BstMAI GTCTC 6 cut(s) 546, 562, 1644, 2652, 2802, 3041
BstMBI GATC 8 cut(s) 94, 448, 595, 1414, 1996, 2398, 2908, 2917
BstMCI CGRYCG 1 cut(s) 1402
BstMWI GCNNNNNNNGC 6 cut(s) 207, 729, 1190, 1461, 2972, 3018
BstNI CCWGG 9 cut(s) 431, 510, 972, 985, 1169, 1457, 1589, 2491, 2581
BstNSI RCATGY 4 cut(s) 92, 1950, 2368, 2647
BstPI GGTNACC 1 cut(s) 323
BstSFI CTRYAG 1 cut(s) 174
BstSLI GKGCMC 1 cut(s) 2014
BstV1I GCAGC 7 cut(s) 470, 741, 744, 917, 939, 1134, 1340
BstV2I GAAGAC 3 cut(s) 384, 1203, 1826
BstX2I RGATCY 1 cut(s) 2908
BstXI CCANNNNNNTGG 3 cut(s) 999, 1364, 1588
BstYI RGATCY 1 cut(s) 2908
BsuRI GGCC 6 cut(s) 949, 1299, 1455, 1729, 2176, 2579
BtgZI GCGATG 1 cut(s) 1650
BtsCI GGATG 3 cut(s) 519, 1031, 2545
BtsIMutI CAGTG 8 cut(s) 80, 297, 735, 1169, 1300, 1308, 2734, 2962
BveI ACCTGC 1 cut(s) 1748
Cac8I GCNNGC 8 cut(s) 288, 707, 1358, 1542, 1699, 1745, 1749, 1948
CaiI CAGNNNCTG 1 cut(s) 3056
CciI TCATGA 1 cut(s) 1837
CfoI GCGC 1 cut(s) 203
Cfr10I RCCGGY 1 cut(s) 1397
Cfr13I GGNCC 3 cut(s) 366, 987, 2174
CseI GACGC 1 cut(s) 1939
CsiI ACCWGGT 1 cut(s) 429
Csp6I GTAC 9 cut(s) 32, 1215, 1423, 1526, 1818, 2093, 2362, 2531, 2900
CspAI ACCGGT 1 cut(s) 1397
CspCI CAANNNNNGTGG 4 cut(s) 358, 393, 895, 930
CviQI GTAC 9 cut(s) 32, 1215, 1423, 1526, 1818, 2093, 2362, 2531, 2900
DdeI CTNAG 6 cut(s) 1391, 1870, 2140, 2315, 2380, 3039
DpnI GATC 8 cut(s) 96, 450, 597, 1416, 1998, 2400, 2910, 2919
DpnII GATC 8 cut(s) 94, 448, 595, 1414, 1996, 2398, 2908, 2917
DraI TTTAAA 1 cut(s) 1269
EaeI YGGCCR 3 cut(s) 1297, 1727, 2577
Eam1104I CTCTTC 2 cut(s) 1278, 3037
EarI CTCTTC 2 cut(s) 1278, 3037
Ecl136II GAGCTC 2 cut(s) 1205, 1594
Eco130I CCWWGG 3 cut(s) 950, 1645, 2779
Eco24I GRGCYC 3 cut(s) 1207, 1596, 2892
Eco31I GGTCTC 1 cut(s) 562
Eco47I GGWCC 2 cut(s) 366, 987
Eco53kI GAGCTC 2 cut(s) 1205, 1594
Eco57I CTGAAG 4 cut(s) 518, 1029, 1215, 2276
Eco88I CYCGRG 3 cut(s) 190, 565, 2460
Eco91I GGTNACC 1 cut(s) 323
EcoICRI GAGCTC 2 cut(s) 1205, 1594
EcoO109I RGGNCCY 1 cut(s) 987
EcoO65I GGTNACC 1 cut(s) 323
EcoRI GAATTC 1 cut(s) 1003
EcoRII CCWGG 9 cut(s) 429, 508, 970, 983, 1167, 1455, 1587, 2489, 2579
EcoT14I CCWWGG 3 cut(s) 950, 1645, 2779
EcoT22I ATGCAT 2 cut(s) 1603, 2791
EcoT38I GRGCYC 3 cut(s) 1207, 1596, 2892
ErhI CCWWGG 3 cut(s) 950, 1645, 2779
FalI AAGNNNNNCTT 2 cut(s) 1818, 1850
FaqI GGGAC 3 cut(s) 973, 1418, 1485
FauI CCCGC 1 cut(s) 188
FauNDI CATATG 2 cut(s) 224, 679
FbaI TGATCA 2 cut(s) 448, 2398
FblI GTMKAC 1 cut(s) 748
Fnu4HI GCNGC 7 cut(s) 459, 730, 733, 928, 931, 1123, 1354
FokI GGATG 3 cut(s) 526, 1038, 2552
FriOI GRGCYC 3 cut(s) 1207, 1596, 2892
Fsp4HI GCNGC 7 cut(s) 459, 730, 733, 928, 931, 1123, 1354
FspBI CTAG 5 cut(s) 1190, 1569, 2156, 2663, 3018
GlaI GCGC 1 cut(s) 202
GluI GCNGC 7 cut(s) 459, 730, 733, 928, 931, 1123, 1354
GsuI CTGGAG 4 cut(s) 321, 372, 840, 1610
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 6 cut(s) 949, 1299, 1455, 1729, 2176, 2579
HapII CCGG 5 cut(s) 572, 1398, 1688, 2651, 2912
HgaI GACGC 1 cut(s) 1939
HhaI GCGC 1 cut(s) 203
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HincII GTYRAC 2 cut(s) 540, 749
HindII GTYRAC 2 cut(s) 540, 749
HindIII AAGCTT 1 cut(s) 2377
HpaII CCGG 5 cut(s) 572, 1398, 1688, 2651, 2912
HphI GGTGA 3 cut(s) 817, 1098, 1424
Hpy166II GTNNAC 5 cut(s) 369, 540, 749, 2012, 2182
Hpy8I GTNNAC 5 cut(s) 369, 540, 749, 2012, 2182
HpyAV CCTTC 6 cut(s) 311, 850, 879, 1135, 1820, 3068
HpyCH4IV ACGT 3 cut(s) 1064, 2412, 2529
HpyF10VI GCNNNNNNNGC 6 cut(s) 207, 729, 1190, 1461, 2972, 3018
HpyF3I CTNAG 6 cut(s) 1391, 1870, 2140, 2315, 2380, 3039
HpySE526I ACGT 3 cut(s) 1064, 2412, 2529
HspAI GCGC 1 cut(s) 201
Kpn2I TCCGGA 1 cut(s) 2650
Ksp22I TGATCA 2 cut(s) 448, 2398
Kzo9I GATC 8 cut(s) 94, 448, 595, 1414, 1996, 2398, 2908, 2917
LmnI GCTCC 2 cut(s) 880, 1591
Lsp1109I GCAGC 7 cut(s) 470, 741, 744, 917, 939, 1134, 1340
LweI GCATC 7 cut(s) 504, 1509, 1610, 1627, 1760, 2134, 2421
MabI ACCWGGT 1 cut(s) 429
MaeI CTAG 5 cut(s) 1190, 1569, 2156, 2663, 3018
MaeII ACGT 3 cut(s) 1064, 2412, 2529
MalI GATC 8 cut(s) 96, 450, 597, 1416, 1998, 2400, 2910, 2919
MboI GATC 8 cut(s) 94, 448, 595, 1414, 1996, 2398, 2908, 2917
MfeI CAATTG 3 cut(s) 768, 1813, 2422
MflI RGATCY 1 cut(s) 2908
MhlI GDGCHC 5 cut(s) 1207, 1397, 1596, 2014, 2892
MlsI TGGCCA 3 cut(s) 1299, 1729, 2579
MluNI TGGCCA 3 cut(s) 1299, 1729, 2579
MlyI GAGTC 5 cut(s) 428, 1046, 1112, 2043, 2307
MmeI TCCRAC 7 cut(s) 318, 858, 1072, 1239, 1655, 2569, 2799
Mox20I TGGCCA 3 cut(s) 1299, 1729, 2579
Mph1103I ATGCAT 2 cut(s) 1603, 2791
MroI TCCGGA 1 cut(s) 2650
MroXI GAANNNNTTC 2 cut(s) 385, 2674
MscI TGGCCA 3 cut(s) 1299, 1729, 2579
MseI TTAA 7 cut(s) 437, 759, 1076, 1268, 1614, 2439, 2825
MslI CAYNNNNRTG 2 cut(s) 404, 1373
Msp20I TGGCCA 3 cut(s) 1299, 1729, 2579
MspA1I CMGCKG 1 cut(s) 930
MspI CCGG 5 cut(s) 572, 1398, 1688, 2651, 2912
MunI CAATTG 3 cut(s) 768, 1813, 2422
Mva1269I GAATGC 3 cut(s) 1139, 1879, 2746
MvaI CCWGG 9 cut(s) 431, 510, 972, 985, 1169, 1457, 1589, 2491, 2581
MwoI GCNNNNNNNGC 6 cut(s) 207, 729, 1190, 1461, 2972, 3018
NciI CCSGG 1 cut(s) 573
NdeI CATATG 2 cut(s) 224, 679
NdeII GATC 8 cut(s) 94, 448, 595, 1414, 1996, 2398, 2908, 2917
NlaIV GGNNCC 4 cut(s) 882, 989, 1692, 2632
NmuCI GTSAC 3 cut(s) 238, 1104, 1801
NsiI ATGCAT 2 cut(s) 1603, 2791
NspI RCATGY 4 cut(s) 92, 1950, 2368, 2647
PaeI GCATGC 1 cut(s) 1950
PaeR7I CTCGAG 1 cut(s) 2460
PagI TCATGA 1 cut(s) 1837
PciI ACATGT 1 cut(s) 2643
PctI GAATGC 3 cut(s) 1139, 1879, 2746
PdmI GAANNNNTTC 2 cut(s) 385, 2674
PfeI GAWTC 7 cut(s) 113, 1273, 1337, 1565, 2384, 2486, 2748
PinAI ACCGGT 1 cut(s) 1397
PkrI GCNGC 7 cut(s) 460, 731, 734, 929, 932, 1124, 1355
PleI GAGTC 5 cut(s) 427, 1045, 1111, 2042, 2307
PpsI GAGTC 5 cut(s) 427, 1045, 1111, 2042, 2307
PpuMI RGGWCCY 1 cut(s) 987
PscI ACATGT 1 cut(s) 2643
PshBI ATTAAT 1 cut(s) 759
PsiI TTATAA 3 cut(s) 234, 1496, 1928
Psp124BI GAGCTC 2 cut(s) 1207, 1596
Psp5II RGGWCCY 1 cut(s) 987
Psp6I CCWGG 9 cut(s) 429, 508, 970, 983, 1167, 1455, 1587, 2489, 2579
PspEI GGTNACC 1 cut(s) 323
PspGI CCWGG 9 cut(s) 429, 508, 970, 983, 1167, 1455, 1587, 2489, 2579
PspN4I GGNNCC 4 cut(s) 882, 989, 1692, 2632
PspPI GGNCC 3 cut(s) 366, 987, 2174
PspPPI RGGWCCY 1 cut(s) 987
PspXI VCTCGAGB 1 cut(s) 2460
PstNI CAGNNNCTG 1 cut(s) 3056
PsuI RGATCY 1 cut(s) 2908
PvuII CAGCTG 1 cut(s) 930
RsaI GTAC 9 cut(s) 33, 1216, 1424, 1527, 1819, 2094, 2363, 2532, 2901
RsaNI GTAC 9 cut(s) 32, 1215, 1423, 1526, 1818, 2093, 2362, 2531, 2900
RseI CAYNNNNRTG 2 cut(s) 404, 1373
SacI GAGCTC 2 cut(s) 1207, 1596
SalI GTCGAC 1 cut(s) 747
SaqAI TTAA 7 cut(s) 437, 759, 1076, 1268, 1614, 2439, 2825
SatI GCNGC 7 cut(s) 459, 730, 733, 928, 931, 1123, 1354
Sau3AI GATC 8 cut(s) 94, 448, 595, 1414, 1996, 2398, 2908, 2917
Sau96I GGNCC 3 cut(s) 366, 987, 2174
ScaI AGTACT 1 cut(s) 33
SchI GAGTC 5 cut(s) 428, 1046, 1112, 2043, 2307
SduI GDGCHC 5 cut(s) 1207, 1397, 1596, 2014, 2892
SexAI ACCWGGT 1 cut(s) 429
SfaNI GCATC 7 cut(s) 504, 1509, 1610, 1627, 1760, 2134, 2421
SfcI CTRYAG 1 cut(s) 174
Sfr274I CTCGAG 1 cut(s) 2460
SinI GGWCC 2 cut(s) 366, 987
SlaI CTCGAG 1 cut(s) 2460
SmiMI CAYNNNNRTG 2 cut(s) 404, 1373
SmlI CTYRAG 4 cut(s) 1069, 1821, 2460, 2717
SmoI CTYRAG 4 cut(s) 1069, 1821, 2460, 2717
SphI GCATGC 1 cut(s) 1950
SsiI CCGC 4 cut(s) 195, 1685, 1919, 2434
SspI AATATT 1 cut(s) 466
SspMI CTAG 5 cut(s) 1190, 1569, 2156, 2663, 3018
SstI GAGCTC 2 cut(s) 1207, 1596
StyI CCWWGG 3 cut(s) 950, 1645, 2779
TaiI ACGT 3 cut(s) 1067, 2415, 2532
TaqII GACCGA 1 cut(s) 1855
TatI WGTACW 5 cut(s) 31, 1422, 1525, 1817, 2361
TfiI GAWTC 7 cut(s) 113, 1273, 1337, 1565, 2384, 2486, 2748
Tru1I TTAA 7 cut(s) 437, 759, 1076, 1268, 1614, 2439, 2825
Tru9I TTAA 7 cut(s) 437, 759, 1076, 1268, 1614, 2439, 2825
TscAI CASTG 8 cut(s) 87, 304, 742, 1169, 1300, 1315, 2734, 2962
TseFI GTSAC 3 cut(s) 238, 1104, 1801
TseI GCWGC 7 cut(s) 458, 729, 732, 927, 930, 1122, 1353
Tsp45I GTSAC 3 cut(s) 238, 1104, 1801
TspGWI ACGGA 1 cut(s) 1418
TspRI CASTG 8 cut(s) 87, 304, 742, 1169, 1300, 1315, 2734, 2962
VneI GTGCAC 1 cut(s) 2010
VpaK11BI GGWCC 2 cut(s) 366, 987
VspI ATTAAT 1 cut(s) 759
XapI RAATTY 7 cut(s) 143, 1003, 1520, 1732, 2258, 2836, 2864
XbaI TCTAGA 1 cut(s) 1568
XceI RCATGY 4 cut(s) 92, 1950, 2368, 2647
XhoI CTCGAG 1 cut(s) 2460
XmiI GTMKAC 1 cut(s) 748
XmnI GAANNNNTTC 2 cut(s) 385, 2674
XspI CTAG 5 cut(s) 1190, 1569, 2156, 2663, 3018
ZrmI AGTACT 1 cut(s) 33
Zsp2I ATGCAT 2 cut(s) 1603, 2791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.