Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000412

Physical Location & Seq

Genomic Coordinates Reverse (-)

80579859 .. 80580417

Gene Structure 559 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG575400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGGTTGGGAGCCACCATCAGAAGCAAGCTGCACTACCTTAGAAGACTGTGGGGATTGGCCATATTCAACTTGCAATCCAGTAAGAGGGGGAAAGAAAAAATGTCTTTGCAATACAAATTTTCAATGGAACTGCATTGACTTAAATTGTACTCAAGAAGGAAATCTACAAGAGCTATCAAATAAGAGTTCAAGGAAAAAATTATTACTAAGAGATGAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin GUB_WAK_bind PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

73

Amino Acids

8.29

Weight (kDa)

5.37

Isoelectric Point (pI)

55.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230
fragaria_vesca	FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44244 FvH4_6g44245 FvH4_6g44245 FvH4_6g44260
malus_domestica	MD04G1084700.v1.1 MD09G1099700.v1.1 MD09G1099800.v1.1 MD09G1099900.v1.1 MD09G1100000.v1.1 MD09G1100100.v1.1 MD17G1087900.v1.1
prunus_persica	Prupe.3G226000_v2.0.a1 Prupe.3G226200_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226600_v2.0.a1 Prupe.3G226700_v2.0.a1
pyrus_communis	pycom02g23070 pycom07g15320 pycom09g02310 pycom09g02330 pycom09g02340 pycom09g02350 pycom09g02360 pycom09g02400 pycom09g02410 pycom09g02430 pycom10g07020 pycom17g08490
rosa_chinensis	RchiOBHm_Chr1g0328701 RchiOBHm_Chr2g0161021 RchiOBHm_Chr2g0161031 RchiOBHm_Chr2g0161081 RchiOBHm_Chr2g0161101
rosa_laevigata	RLG00000021249 RLG00000021250 RLG00000021251 RLG00000021253 RLG00000021257 RLG00000029922
rosa_multiflora	Rmu_sc0000955.1_g000023 Rmu_sc0000955.1_g000025 Rmu_sc0000955.1_g000041 Rmu_sc0002312.1_g000012 Rmu_sc0002481.1_g000021 Rmu_sc0002481.1_g000026 Rmu_sc0002481.1_g000028 Rmu_sc0002481.1_g000039 Rmu_sc0006420.1_g000017
rosa_roxburghii	Rroxscaffold_2G00089160 Rroxscaffold_2G00089200 Rroxscaffold_2G00089220 Rroxscaffold_2G00089270 Rroxscaffold_2G00089300 Rroxscaffold_4G00321430
rosa_rugosa	Rorug02G0485900 Rorug02G0486100 Rorug03G0345100
rosa_samantha	Rh1AG094100 Rh1DG097200 Rh2AG552000 Rh2AG552100 Rh2AG552200 Rh2AG552300 Rh2AG552500 Rh2BG566400 Rh2BG566500 Rh2CG535800 Rh2CG535900 Rh2CG536100 Rh2CG536200 Rh2DG575000 Rh2DG575100 Rh2DG575400 Rh2DG575500 Rh2DG575600 Rh4AG077200 Rh4CG082400
rosa_wichuraiana	Rw2G045690 Rw2G045700 Rw2G045710 Rw4G006230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	118
AfaI	GTAC	1 cut(s)	151
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	3 cut(s)	69, 125, 192
AluBI	AGCT	2 cut(s)	30, 175
AluI	AGCT	2 cut(s)	30, 175
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	1 cut(s)	30
ApoI	RAATTY	1 cut(s)	118
BalI	TGGCCA	1 cut(s)	61
BarI	GAAGNNNNNNTAC	2 cut(s)	150, 182
BbsI	GAAGAC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	25
BisI	GCNGC	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	12
BpiI	GAAGAC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	80
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseNI	ACTGG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	16
BshFI	GGCC	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	86
BsnI	GGCC	1 cut(s)	61
BspANI	GGCC	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	2 cut(s)	40, 209
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	150
CviJI	RGCY	4 cut(s)	13, 30, 61, 175
CviKI_1	RGCY	4 cut(s)	13, 30, 61, 175
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	2 cut(s)	40, 209
EaeI	YGGCCR	1 cut(s)	59
FaiI	YATR	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	31
Fsp4HI	GCNGC	1 cut(s)	31
GluI	GCNGC	1 cut(s)	31
HaeIII	GGCC	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4V	TGCA	4 cut(s)	33, 75, 111, 135
HpyF3I	CTNAG	2 cut(s)	40, 209
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	1 cut(s)	93
Lsp1109I	GCAGC	1 cut(s)	17
MboII	GAAGA	1 cut(s)	56
MlsI	TGGCCA	1 cut(s)	61
MluCI	AATT	3 cut(s)	118, 145, 200
MluNI	TGGCCA	1 cut(s)	61
MnlI	CCTC	1 cut(s)	80
Mox20I	TGGCCA	1 cut(s)	61
MscI	TGGCCA	1 cut(s)	61
MseI	TTAA	1 cut(s)	143
Msp20I	TGGCCA	1 cut(s)	61
NlaIV	GGNNCC	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	12
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	1 cut(s)	31
SetI	ASST	3 cut(s)	32, 41, 177
SgeI	CNNG	6 cut(s)	39, 84, 92, 167, 182, 204
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
Sse9I	AATT	3 cut(s)	118, 145, 200
TaaI	ACNGT	1 cut(s)	50
TasI	AATT	3 cut(s)	118, 145, 200
TatI	WGTACW	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TseI	GCWGC	1 cut(s)	30
XapI	RAATTY	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.