Rh4CG082400

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000412
Physical Location & Seq
Reverse (-)
14606143 .. 14607713
1571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG082400.1

Sequence Viewer

Length: 846 bp
ATGGATTCAGGGAACCTGGTGTTAAGTGATACTGGTGAGTTGACAGCGGTGATTTTGTGGCAGAGCTTTCAAAATCCAACTGATACATTCATTCCTGGGATGCGAATGGATAGTAACTTGAAGTTGACTTCATGGAGCGACGAAGATGACCGAAGAACTGGGAACTACACCTTCGAACTAGATCAAGAAGGGAAGTCAGAGAACCAGTTTACCATCTTAAATAGTTCGTTTCGTTACTGGAAAAGTGGAGAGCCAGGTAAATATTTAAGCTCAGATGAGATGCGTCCTGAGTTGAATGTTACACGTACTTGTGCAGAATCAACTACAAGAGACTGTAGCCCTTGTGGCACAACTACAATTCCTTATCCTCTGAGCACTACTGGAACAGATTGTGGCGACCCCATGTACAAAAGTTTCGCGTGCAATGCCTCCATTAATGAATTTAGCTTCCTTGGACCAGATGGCAAATCCTTTAGAGTTATAAATATCAGCCGAAGTACACAACGATTCATTATCAAATCCAAAAATATGAATTATTGTGATTCTAGAAACAGAGTGCTGAACATTTCCTTCCCGTTTAAGGTAATCAGTTGGTGTAGTTCTGACCAGATGAGGAAATTTATTTCTGGCATAGATTCATCCAGCAGTCCTTCAGTAATAGAGATGGGTTGGGAGCCACCATCGGAAGCAAACTGCACTATCTTAGACTGCAGGGATTGGCCATATTCAACTTGCAAAACAGTAAGAGGGGGAGAGAAAAAATGCCTTTGCAATACAAATTTTCAATGGAACGGCATTGACTTAAATTGTACTCAAGGTGAAAATGCTGTGCTTCTTGTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin GUB_WAK_bind PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

281

Amino Acids

31.59

Weight (kDa)

4.93

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 1 - 41 2e-09 D-mannose binding lectin
GUB_WAK_bind PF13947 112 - 172 5.4e-06 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230
fragaria_vesca FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44244 FvH4_6g44245 FvH4_6g44245 FvH4_6g44260
malus_domestica MD04G1084700.v1.1 MD09G1099700.v1.1 MD09G1099800.v1.1 MD09G1099900.v1.1 MD09G1100000.v1.1 MD09G1100100.v1.1 MD17G1087900.v1.1
prunus_persica Prupe.3G226000_v2.0.a1 Prupe.3G226200_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226600_v2.0.a1 Prupe.3G226700_v2.0.a1
pyrus_communis pycom02g23070 pycom07g15320 pycom09g02310 pycom09g02330 pycom09g02340 pycom09g02350 pycom09g02360 pycom09g02400 pycom09g02410 pycom09g02430 pycom10g07020 pycom17g08490
rosa_chinensis RchiOBHm_Chr1g0328701 RchiOBHm_Chr2g0161021 RchiOBHm_Chr2g0161031 RchiOBHm_Chr2g0161081 RchiOBHm_Chr2g0161101
rosa_laevigata RLG00000021249 RLG00000021250 RLG00000021251 RLG00000021253 RLG00000021257 RLG00000029922
rosa_multiflora Rmu_sc0000955.1_g000023 Rmu_sc0000955.1_g000025 Rmu_sc0000955.1_g000041 Rmu_sc0002312.1_g000012 Rmu_sc0002481.1_g000021 Rmu_sc0002481.1_g000026 Rmu_sc0002481.1_g000028 Rmu_sc0002481.1_g000039 Rmu_sc0006420.1_g000017
rosa_roxburghii Rroxscaffold_2G00089160 Rroxscaffold_2G00089200 Rroxscaffold_2G00089220 Rroxscaffold_2G00089270 Rroxscaffold_2G00089300 Rroxscaffold_4G00321430
rosa_rugosa Rorug02G0485900 Rorug02G0486100 Rorug03G0345100
rosa_samantha Rh1AG094100 Rh1DG097200 Rh2AG552000 Rh2AG552100 Rh2AG552200 Rh2AG552300 Rh2AG552500 Rh2BG566400 Rh2BG566500 Rh2CG535800 Rh2CG535900 Rh2CG536100 Rh2CG536200 Rh2DG575000 Rh2DG575100 Rh2DG575400 Rh2DG575500 Rh2DG575600 Rh4AG077200 Rh4CG082400
rosa_wichuraiana Rw2G045690 Rw2G045700 Rw2G045710 Rw4G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 482
AccII CGCG 1 cut(s) 419
AciI CCGC 1 cut(s) 47
AcoI YGGCCR 1 cut(s) 719
AcsI RAATTY 3 cut(s) 440, 617, 778
AcuI CTGAAG 1 cut(s) 636
AfaI GTAC 4 cut(s) 307, 407, 499, 811
AfiI CCNNNNNNNGG 1 cut(s) 580
AflIII ACRYGT 1 cut(s) 302
AgsI TTSAA 5 cut(s) 71, 121, 295, 729, 785
AjnI CCWGG 3 cut(s) 15, 94, 253
AluBI AGCT 3 cut(s) 66, 270, 447
AluI AGCT 3 cut(s) 66, 270, 447
Alw21I GWGCWC 1 cut(s) 377
Alw26I GTCTC 1 cut(s) 324
AoxI GGCC 1 cut(s) 719
ApoI RAATTY 3 cut(s) 440, 617, 778
AseI ATTAAT 1 cut(s) 435
AspS9I GGNCC 1 cut(s) 455
AsuHPI GGTGA 3 cut(s) 47, 61, 830
AsuII TTCGAA 1 cut(s) 174
AvaII GGWCC 1 cut(s) 455
BalI TGGCCA 1 cut(s) 721
Bbv12I GWGCWC 1 cut(s) 377
BccI CCATC 4 cut(s) 221, 455, 658, 688
BceAI ACGGC 1 cut(s) 808
BciT130I CCWGG 3 cut(s) 17, 96, 255
BcoDI GTCTC 1 cut(s) 324
BfaI CTAG 2 cut(s) 179, 546
BfmI CTRYAG 2 cut(s) 334, 709
BglI GCCNNNNNGGC 1 cut(s) 345
Bme1390I CCNGG 3 cut(s) 17, 96, 255
Bme18I GGWCC 1 cut(s) 455
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 2 cut(s) 14, 675
BmrFI CCNGG 3 cut(s) 17, 96, 255
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 2 cut(s) 90, 270
BmuI ACTGGG 1 cut(s) 168
Bpu14I TTCGAA 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 798
BsaAI YACGTR 1 cut(s) 305
BsaJI CCNNGG 2 cut(s) 95, 451
Bsc4I CCNNNNNNNGG 1 cut(s) 580
Bse1I ACTGG 5 cut(s) 37, 163, 205, 242, 385
Bse3DI GCAATG 1 cut(s) 430
BseBI CCWGG 3 cut(s) 17, 96, 255
BseDI CCNNGG 2 cut(s) 95, 451
BseGI GGATG 2 cut(s) 105, 638
BseLI CCNNNNNNNGG 1 cut(s) 580
BseMI GCAATG 1 cut(s) 430
BseMII CTCAG 3 cut(s) 279, 285, 362
BseNI ACTGG 5 cut(s) 37, 163, 205, 242, 385
BsgI GTGCAG 2 cut(s) 333, 679
Bsh1236I CGCG 1 cut(s) 419
BshFI GGCC 1 cut(s) 721
BsiHKAI GWGCWC 1 cut(s) 377
BslI CCNNNNNNNGG 1 cut(s) 580
BsmAI GTCTC 1 cut(s) 324
BsnI GGCC 1 cut(s) 721
Bsp119I TTCGAA 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 377
Bsp1407I TGTACA 1 cut(s) 405
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 1 cut(s) 47
BspANI GGCC 1 cut(s) 721
BspCNI CTCAG 3 cut(s) 280, 284, 363
BspFNI CGCG 1 cut(s) 419
BspLI GGNNCC 2 cut(s) 14, 675
BspMAI CTGCAG 1 cut(s) 713
BspT104I TTCGAA 1 cut(s) 174
BsrDI GCAATG 1 cut(s) 430
BsrGI TGTACA 1 cut(s) 405
BsrI ACTGG 5 cut(s) 37, 163, 205, 242, 385
BssECI CCNNGG 2 cut(s) 95, 451
BssMI GATC 1 cut(s) 181
BssT1I CCWWGG 1 cut(s) 451
Bst2UI CCWGG 3 cut(s) 17, 96, 255
Bst4CI ACNGT 2 cut(s) 335, 742
BstAUI TGTACA 1 cut(s) 405
BstBAI YACGTR 1 cut(s) 305
BstBI TTCGAA 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 421
BstDEI CTNAG 4 cut(s) 271, 288, 371, 703
BstF5I GGATG 2 cut(s) 105, 638
BstFNI CGCG 1 cut(s) 419
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 1 cut(s) 181
BstMWI GCNNNNNNNGC 2 cut(s) 345, 425
BstNI CCWGG 3 cut(s) 17, 96, 255
BstSCI CCNGG 3 cut(s) 15, 94, 253
BstSFI CTRYAG 2 cut(s) 334, 709
BstUI CGCG 1 cut(s) 419
BsuRI GGCC 1 cut(s) 721
BtsCI GGATG 2 cut(s) 105, 638
Cac8I GCNNGC 1 cut(s) 421
Cfr13I GGNCC 1 cut(s) 455
CseI GACGC 1 cut(s) 272
CsiI ACCWGGT 1 cut(s) 15
Csp6I GTAC 4 cut(s) 306, 406, 498, 810
CviAII CATG 2 cut(s) 132, 403
CviJI RGCY 8 cut(s) 66, 253, 270, 339, 447, 492, 676, 721
CviKI_1 RGCY 8 cut(s) 66, 253, 270, 339, 447, 492, 676, 721
CviQI GTAC 4 cut(s) 306, 406, 498, 810
DdeI CTNAG 4 cut(s) 271, 288, 371, 703
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 719
Eco130I CCWWGG 1 cut(s) 451
Eco47I GGWCC 1 cut(s) 455
Eco57I CTGAAG 1 cut(s) 636
EcoRII CCWGG 3 cut(s) 15, 94, 253
EcoT14I CCWWGG 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 2 cut(s) 135, 406
FaiI YATR 6 cut(s) 133, 404, 482, 530, 632, 724
FatI CATG 2 cut(s) 131, 402
FokI GGATG 2 cut(s) 112, 625
FspBI CTAG 2 cut(s) 179, 546
HaeIII GGCC 1 cut(s) 721
HgaI GACGC 1 cut(s) 272
Hin1II CATG 2 cut(s) 135, 406
HincII GTYRAC 2 cut(s) 42, 126
HindII GTYRAC 2 cut(s) 42, 126
HinfI GANTC 5 cut(s) 5, 317, 507, 542, 635
HphI GGTGA 3 cut(s) 47, 61, 830
Hpy166II GTNNAC 4 cut(s) 42, 126, 210, 500
Hpy188I TCNGA 5 cut(s) 199, 274, 372, 604, 685
Hpy188III TCNNGA 3 cut(s) 185, 287, 546
Hpy8I GTNNAC 4 cut(s) 42, 126, 210, 500
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 4 cut(s) 181, 182, 580, 660
HpyCH4III ACNGT 2 cut(s) 335, 742
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 6 cut(s) 314, 423, 696, 711, 735, 771
HpyF10VI GCNNNNNNNGC 2 cut(s) 345, 425
HpyF3I CTNAG 4 cut(s) 271, 288, 371, 703
HpySE526I ACGT 1 cut(s) 304
Hsp92II CATG 2 cut(s) 135, 406
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 2 cut(s) 135, 673
LweI GCATC 2 cut(s) 90, 270
MabI ACCWGGT 1 cut(s) 15
MaeI CTAG 2 cut(s) 179, 546
MaeII ACGT 1 cut(s) 304
MaeIII GTNAC 3 cut(s) 113, 233, 298
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 2 cut(s) 155, 165
MhlI GDGCHC 1 cut(s) 377
MlsI TGGCCA 1 cut(s) 721
MluCI AATT 7 cut(s) 357, 440, 532, 617, 778, 805, 841
MluNI TGGCCA 1 cut(s) 721
MmeI TCCRAC 1 cut(s) 101
MnlI CCTC 4 cut(s) 378, 439, 606, 740
Mox20I TGGCCA 1 cut(s) 721
MscI TGGCCA 1 cut(s) 721
MseI TTAA 7 cut(s) 23, 218, 266, 435, 579, 803, 844
Msp20I TGGCCA 1 cut(s) 721
MspA1I CMGCKG 1 cut(s) 47
MspR9I CCNGG 3 cut(s) 17, 96, 255
MvaI CCWGG 3 cut(s) 17, 96, 255
MvnI CGCG 1 cut(s) 419
MwoI GCNNNNNNNGC 2 cut(s) 345, 425
NdeII GATC 1 cut(s) 181
NlaIII CATG 2 cut(s) 135, 406
NlaIV GGNNCC 2 cut(s) 14, 675
NspV TTCGAA 1 cut(s) 174
PfeI GAWTC 5 cut(s) 5, 317, 507, 542, 635
Ppu21I YACGTR 1 cut(s) 305
PshBI ATTAAT 1 cut(s) 435
PsiI TTATAA 1 cut(s) 482
Psp6I CCWGG 3 cut(s) 15, 94, 253
PspGI CCWGG 3 cut(s) 15, 94, 253
PspN4I GGNNCC 2 cut(s) 14, 675
PspPI GGNCC 1 cut(s) 455
PstI CTGCAG 1 cut(s) 713
RsaI GTAC 4 cut(s) 307, 407, 499, 811
RsaNI GTAC 4 cut(s) 306, 406, 498, 810
SaqAI TTAA 7 cut(s) 23, 218, 266, 435, 579, 803, 844
Sau3AI GATC 1 cut(s) 181
Sau96I GGNCC 1 cut(s) 455
ScrFI CCNGG 3 cut(s) 17, 96, 255
SduI GDGCHC 1 cut(s) 377
SetI ASST 9 cut(s) 18, 68, 173, 259, 272, 307, 449, 585, 820
SexAI ACCWGGT 1 cut(s) 15
SfaNI GCATC 2 cut(s) 90, 270
SfcI CTRYAG 2 cut(s) 334, 709
SfuI TTCGAA 1 cut(s) 174
SinI GGWCC 1 cut(s) 455
SmlI CTYRAG 1 cut(s) 813
SmoI CTYRAG 1 cut(s) 813
Sse9I AATT 7 cut(s) 357, 440, 532, 617, 778, 805, 841
SsiI CCGC 1 cut(s) 47
SspI AATATT 1 cut(s) 263
SspMI CTAG 2 cut(s) 179, 546
StyD4I CCNGG 3 cut(s) 15, 94, 253
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 2 cut(s) 335, 742
TaiI ACGT 1 cut(s) 307
TaqI TCGA 1 cut(s) 174
TaqII GACCGA 1 cut(s) 165
TasI AATT 7 cut(s) 357, 440, 532, 617, 778, 805, 841
TatI WGTACW 3 cut(s) 405, 497, 809
TfiI GAWTC 5 cut(s) 5, 317, 507, 542, 635
Tru1I TTAA 7 cut(s) 23, 218, 266, 435, 579, 803, 844
Tru9I TTAA 7 cut(s) 23, 218, 266, 435, 579, 803, 844
TspDTI ATGAA 6 cut(s) 79, 120, 453, 499, 545, 627
VpaK11BI GGWCC 1 cut(s) 455
VspI ATTAAT 1 cut(s) 435
XapI RAATTY 3 cut(s) 440, 617, 778
XbaI TCTAGA 1 cut(s) 545
XspI CTAG 2 cut(s) 179, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.