Rh2AG552200

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000412
Physical Location & Seq
Reverse (-)
78302403 .. 78303485
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG552200.1

Sequence Viewer

Length: 405 bp
ATGTACTTAAGTTTCACGTGCAATGCCTCCATTAATGAATTTAGCTTCCTGGGACCAGATGGCACCTCCTTTAGAGTAAGAGGGGGAAAGAAAAAATGTCTTTGCAATACAAATTTTCAATGGAACTGCATTGACTTAAATTGTACTCAAGAAGGAAATCTACAAGAGCTATCAAATAAGAGTTCAAGGAAAAAATTGTTATTGTCTCTGGTTGTCGTGGCAGTCATAAGTGGGATTTTTCTGGCATGCATCATTGGTTTTTGTATATGGAGAAGAAAGATTACTAAGAGACGAGATCAAGTAAGTCGTCCGCAGCTCGATAGTGGAAGACGAGTCAAAGAGCTCATAGACACGAGTGACTTCAATGAAGAAGATGACAAAGGCATAGATGTACCTTTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin GUB_WAK_bind PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

134

Amino Acids

15.27

Weight (kDa)

8.92

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230
fragaria_vesca FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44244 FvH4_6g44245 FvH4_6g44245 FvH4_6g44260
malus_domestica MD04G1084700.v1.1 MD09G1099700.v1.1 MD09G1099800.v1.1 MD09G1099900.v1.1 MD09G1100000.v1.1 MD09G1100100.v1.1 MD17G1087900.v1.1
prunus_persica Prupe.3G226000_v2.0.a1 Prupe.3G226200_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226600_v2.0.a1 Prupe.3G226700_v2.0.a1
pyrus_communis pycom02g23070 pycom07g15320 pycom09g02310 pycom09g02330 pycom09g02340 pycom09g02350 pycom09g02360 pycom09g02400 pycom09g02410 pycom09g02430 pycom10g07020 pycom17g08490
rosa_chinensis RchiOBHm_Chr1g0328701 RchiOBHm_Chr2g0161021 RchiOBHm_Chr2g0161031 RchiOBHm_Chr2g0161081 RchiOBHm_Chr2g0161101
rosa_laevigata RLG00000021249 RLG00000021250 RLG00000021251 RLG00000021253 RLG00000021257 RLG00000029922
rosa_multiflora Rmu_sc0000955.1_g000023 Rmu_sc0000955.1_g000025 Rmu_sc0000955.1_g000041 Rmu_sc0002312.1_g000012 Rmu_sc0002481.1_g000021 Rmu_sc0002481.1_g000026 Rmu_sc0002481.1_g000028 Rmu_sc0002481.1_g000039 Rmu_sc0006420.1_g000017
rosa_roxburghii Rroxscaffold_2G00089160 Rroxscaffold_2G00089200 Rroxscaffold_2G00089220 Rroxscaffold_2G00089270 Rroxscaffold_2G00089300 Rroxscaffold_4G00321430
rosa_rugosa Rorug02G0485900 Rorug02G0486100 Rorug03G0345100
rosa_samantha Rh1AG094100 Rh1DG097200 Rh2AG552000 Rh2AG552100 Rh2AG552200 Rh2AG552300 Rh2AG552500 Rh2BG566400 Rh2BG566500 Rh2CG535800 Rh2CG535900 Rh2CG536100 Rh2CG536200 Rh2DG575000 Rh2DG575100 Rh2DG575400 Rh2DG575500 Rh2DG575600 Rh4AG077200 Rh4CG082400
rosa_wichuraiana Rw2G045690 Rw2G045700 Rw2G045710 Rw4G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 62
AciI CCGC 1 cut(s) 311
AcsI RAATTY 2 cut(s) 38, 112
AcvI CACGTG 1 cut(s) 18
AfaI GTAC 3 cut(s) 5, 145, 393
AflII CTTAAG 1 cut(s) 7
AgsI TTSAA 3 cut(s) 119, 186, 364
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 4 cut(s) 45, 169, 316, 343
AluI AGCT 4 cut(s) 45, 169, 316, 343
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 2 cut(s) 210, 283
ApeKI GCWGC 1 cut(s) 313
ApoI RAATTY 2 cut(s) 38, 112
AseI ATTAAT 1 cut(s) 33
AspS9I GGNCC 1 cut(s) 53
AvaII GGWCC 1 cut(s) 53
BanI GGYRCC 1 cut(s) 62
BanII GRGCYC 1 cut(s) 345
BarI GAAGNNNNNNTAC 4 cut(s) 144, 176, 265, 297
BauI CACGAG 1 cut(s) 352
BbrPI CACGTG 1 cut(s) 18
BbsI GAAGAC 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 325
BccI CCATC 1 cut(s) 53
BciT130I CCWGG 1 cut(s) 50
BcoDI GTCTC 2 cut(s) 210, 283
BfrI CTTAAG 1 cut(s) 7
BisI GCNGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 315
Bme1390I CCNGG 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 2 cut(s) 54, 64
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 258
BpiI GAAGAC 1 cut(s) 334
BpuEI CTTGAG 1 cut(s) 132
BsaAI YACGTR 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 49
Bse3DI GCAATG 1 cut(s) 28
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 49
BseMI GCAATG 1 cut(s) 28
BseXI GCAGC 1 cut(s) 325
BshNI GGYRCC 1 cut(s) 62
BsiHKAI GWGCWC 1 cut(s) 345
BslFI GGGAC 1 cut(s) 66
BsmAI GTCTC 2 cut(s) 210, 283
BsmBI CGTCTC 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 1 cut(s) 295
BspACI CCGC 1 cut(s) 311
BspLI GGNNCC 2 cut(s) 54, 64
BspT107I GGYRCC 1 cut(s) 62
BspTI CTTAAG 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 49
BssMI GATC 1 cut(s) 295
BssSI CACGAG 1 cut(s) 352
Bst2BI CACGAG 1 cut(s) 352
Bst2UI CCWGG 1 cut(s) 50
BstAFI CTTAAG 1 cut(s) 7
BstBAI YACGTR 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 247
BstDEI CTNAG 1 cut(s) 285
BstKTI GATC 1 cut(s) 298
BstMAI GTCTC 2 cut(s) 210, 283
BstMBI GATC 1 cut(s) 295
BstNI CCWGG 1 cut(s) 50
BstNSI RCATGY 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 325
BstV2I GAAGAC 1 cut(s) 334
Cac8I GCNNGC 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 53
Csp6I GTAC 3 cut(s) 4, 144, 392
CviAII CATG 1 cut(s) 246
CviJI RGCY 4 cut(s) 45, 169, 316, 343
CviKI_1 RGCY 4 cut(s) 45, 169, 316, 343
CviQI GTAC 3 cut(s) 4, 144, 392
DdeI CTNAG 1 cut(s) 285
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
Ecl136II GAGCTC 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 345
Eco47I GGWCC 1 cut(s) 53
Eco53kI GAGCTC 1 cut(s) 343
Eco72I CACGTG 1 cut(s) 18
EcoICRI GAGCTC 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 48
EcoT22I ATGCAT 1 cut(s) 251
EcoT38I GRGCYC 1 cut(s) 345
Esp3I CGTCTC 1 cut(s) 283
FaeI CATG 1 cut(s) 249
FaiI YATR 6 cut(s) 227, 247, 266, 268, 347, 386
FaqI GGGAC 1 cut(s) 66
FatI CATG 1 cut(s) 245
Fnu4HI GCNGC 1 cut(s) 314
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 1 cut(s) 314
GluI GCNGC 1 cut(s) 314
Hin1II CATG 1 cut(s) 249
HinfI GANTC 1 cut(s) 333
Hpy188III TCNNGA 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 146
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 4 cut(s) 21, 105, 129, 249
HpyF3I CTNAG 1 cut(s) 285
HpySE526I ACGT 1 cut(s) 17
Hsp92II CATG 1 cut(s) 249
Kzo9I GATC 1 cut(s) 295
LpnPI CCDG 5 cut(s) 35, 62, 69, 194, 227
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 1 cut(s) 258
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 1 cut(s) 356
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 4 cut(s) 285, 339, 380, 383
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 4 cut(s) 38, 112, 139, 194
MlyI GAGTC 1 cut(s) 342
MnlI CCTC 3 cut(s) 37, 74, 76
Mph1103I ATGCAT 1 cut(s) 251
MseI TTAA 3 cut(s) 8, 33, 137
MspCI CTTAAG 1 cut(s) 7
MspR9I CCNGG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 50
NdeII GATC 1 cut(s) 295
NlaIII CATG 1 cut(s) 249
NlaIV GGNNCC 2 cut(s) 54, 64
NmuCI GTSAC 1 cut(s) 356
NsiI ATGCAT 1 cut(s) 251
NspI RCATGY 1 cut(s) 249
PaeI GCATGC 1 cut(s) 249
PkrI GCNGC 1 cut(s) 315
PleI GAGTC 1 cut(s) 341
PmaCI CACGTG 1 cut(s) 18
PmlI CACGTG 1 cut(s) 18
PpsI GAGTC 1 cut(s) 341
Ppu21I YACGTR 1 cut(s) 18
PshBI ATTAAT 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 48
PspCI CACGTG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 2 cut(s) 54, 64
PspPI GGNCC 1 cut(s) 53
RsaI GTAC 3 cut(s) 5, 145, 393
RsaNI GTAC 3 cut(s) 4, 144, 392
SacI GAGCTC 1 cut(s) 345
SaqAI TTAA 3 cut(s) 8, 33, 137
SatI GCNGC 1 cut(s) 314
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 1 cut(s) 53
SchI GAGTC 1 cut(s) 342
ScrFI CCNGG 1 cut(s) 50
SduI GDGCHC 1 cut(s) 345
SetI ASST 7 cut(s) 20, 47, 68, 171, 318, 345, 397
SfaNI GCATC 1 cut(s) 258
SinI GGWCC 1 cut(s) 53
SmlI CTYRAG 2 cut(s) 7, 147
SmoI CTYRAG 2 cut(s) 7, 147
SphI GCATGC 1 cut(s) 249
Sse9I AATT 4 cut(s) 38, 112, 139, 194
SsiI CCGC 1 cut(s) 311
SstI GAGCTC 1 cut(s) 345
StyD4I CCNGG 1 cut(s) 48
TaiI ACGT 1 cut(s) 20
TaqI TCGA 1 cut(s) 318
TasI AATT 4 cut(s) 38, 112, 139, 194
TatI WGTACW 2 cut(s) 3, 143
Tru1I TTAA 3 cut(s) 8, 33, 137
Tru9I TTAA 3 cut(s) 8, 33, 137
TseFI GTSAC 1 cut(s) 356
TseI GCWGC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 2 cut(s) 51, 381
Vha464I CTTAAG 1 cut(s) 7
VpaK11BI GGWCC 1 cut(s) 53
VspI ATTAAT 1 cut(s) 33
XapI RAATTY 2 cut(s) 38, 112
XceI RCATGY 1 cut(s) 249
Zsp2I ATGCAT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.