Rw4G019630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0008608
Physical Location & Seq
Reverse (-)
43078207 .. 43085534
7328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G019630.1

Sequence Viewer

Length: 216 bp
ATGAAGTTTCTAGATTGGTATTTGAAGATCGCATTTGGGTCAGCTCTCATTGGAGCTTCCATGGAGTTTTTCATGATTAAAACTGGCTTCTATGATAAAGTAACAGTTCTGGAGTCTGAAAAACGTGCTTGGGAGAATTCGCCAGAGGCTCAGGCAGTCAGAGAAGCTCTCAATCCTTGGAGAAATCGTGATGTGGAAGCAAAGAAAGAATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

8.28

Weight (kDa)

6.24

Isoelectric Point (pI)

30.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 136
AgsI TTSAA 1 cut(s) 25
AluBI AGCT 3 cut(s) 44, 56, 167
AluI AGCT 3 cut(s) 44, 56, 167
ApoI RAATTY 1 cut(s) 136
BfaI CTAG 1 cut(s) 11
BplI GAGNNNNNCTC 2 cut(s) 153, 185
BpmI CTGGAG 1 cut(s) 131
Bpu10I CCTNAGC 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 60, 176
BsaXI ACNNNNNCTCC 2 cut(s) 172, 202
Bse1I ACTGG 1 cut(s) 88
BseDI CCNNGG 2 cut(s) 60, 176
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 88
Bsp143I GATC 1 cut(s) 27
Bsp19I CCATGG 1 cut(s) 60
BspCNI CTCAG 1 cut(s) 163
BspHI TCATGA 1 cut(s) 72
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 2 cut(s) 60, 176
BssMI GATC 1 cut(s) 27
BssT1I CCWWGG 2 cut(s) 60, 176
Bst4CI ACNGT 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 150
BstDSI CCRYGG 1 cut(s) 60
BstKTI GATC 1 cut(s) 30
BstMBI GATC 1 cut(s) 27
BtgI CCRYGG 1 cut(s) 60
CciI TCATGA 1 cut(s) 72
CviAII CATG 2 cut(s) 61, 73
CviJI RGCY 5 cut(s) 44, 56, 87, 149, 167
CviKI_1 RGCY 5 cut(s) 44, 56, 87, 149, 167
DdeI CTNAG 1 cut(s) 150
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
Eco130I CCWWGG 2 cut(s) 60, 176
EcoRI GAATTC 1 cut(s) 136
EcoT14I CCWWGG 2 cut(s) 60, 176
ErhI CCWWGG 2 cut(s) 60, 176
FaeI CATG 2 cut(s) 64, 76
FaiI YATR 3 cut(s) 62, 74, 93
FatI CATG 2 cut(s) 60, 72
FspBI CTAG 1 cut(s) 11
GsuI CTGGAG 1 cut(s) 131
Hin1II CATG 2 cut(s) 64, 76
HinfI GANTC 2 cut(s) 113, 209
Hpy188I TCNGA 2 cut(s) 118, 161
Hpy188III TCNNGA 4 cut(s) 11, 73, 110, 188
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 124
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 2 cut(s) 64, 76
Kzo9I GATC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 4 cut(s) 69, 95, 137, 156
MaeI CTAG 1 cut(s) 11
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 1 cut(s) 100
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MboII GAAGA 1 cut(s) 37
MluCI AATT 1 cut(s) 136
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 1 cut(s) 139
MseI TTAA 1 cut(s) 78
NcoI CCATGG 1 cut(s) 60
NdeII GATC 1 cut(s) 27
NlaIII CATG 2 cut(s) 64, 76
PagI TCATGA 1 cut(s) 72
PfeI GAWTC 1 cut(s) 209
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
SaqAI TTAA 1 cut(s) 78
Sau3AI GATC 1 cut(s) 27
SchI GAGTC 1 cut(s) 122
SetI ASST 4 cut(s) 46, 58, 127, 169
Sse9I AATT 1 cut(s) 136
SspMI CTAG 1 cut(s) 11
StyI CCWWGG 2 cut(s) 60, 176
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 1 cut(s) 127
TasI AATT 1 cut(s) 136
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TspDTI ATGAA 2 cut(s) 17, 61
XapI RAATTY 1 cut(s) 136
XbaI TCTAGA 1 cut(s) 10
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.