Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000120.1

Orthogroup ID

OG0006557

Physical Location & Seq

Genomic Coordinates Forward (+)

21934 .. 23845

Gene Structure 1912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atggcagcagaagaagaagtggcgctagatttggaggagctccgccgtatccagagcattgcaaaacgaccccggattctcaatctcatctcctctgaaatcggcaatttggaaaagttgtcaaaagaggctgcttctaaacctaccttgccaactcctactccaactccaactccaatttcttcggcagtgaaggtgccttccaccccagctctgaattatgttacacttgggtcattcagctgggagcaagatactgaaaaagtgaagatatatatatttttggagggagttgatcaggagaaaatggagactgagatcaagcctaattcaattgatatcaaattgcatgatgtccaaggaaagaactacagatgtgctatacctaaactccatagccagattgttccagagaagtgtaaggttctagtaaagcctacaaggatcgtgattacattgattaaagcttcaaaggggaactggctggatctgcatttcaaggaggacaagctaaagccgaatttggataaggagaaggatcctatggcaggaatcatggacttgatgaagaatatgtacaatgaaggggatgaagaaatgaagcgaacaattgccaaagcatggaccgatgcgagatctggaaaaacagccgatccactgaagggctttaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

CS Siah-Interact_N

Protein Analysis

224

Amino Acids

25.21

Weight (kDa)

8.66

Isoelectric Point (pI)

29.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	79 - 155	1.3e-16	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30060 AT1G30070 AT1G30070 AT2G01800 AT2G01800 AT2G01800 AT2G02770 AT4G00580 AT4G00580 AT4G00920
fragaria_vesca	FvH4_3g05510
malus_domestica	MD05G1283600.v1.1 MD10G1261800.v1.1
prunus_persica	Prupe.4G081000_v2.0.a1
pyrus_communis	pycom05g26270 pycom10g21810
rosa_chinensis	RchiOBHm_Chr5g0014231
rosa_laevigata	RLG00000032092
rosa_multiflora	Rmu_ssc0000120.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062350
rosa_rugosa	Rorug05G0016300
rosa_samantha	Rh5AG110700 Rh5BG108000 Rh5CG119400 Rh5DG106100
rosa_wichuraiana	Rw5G009650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	196
AccB7I	CCANNNNNTGG	1 cut(s)	621
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	5 cut(s)	452, 495, 533, 546, 647
AcsI	RAATTY	1 cut(s)	520
AfaI	GTAC	1 cut(s)	578
AfiI	CCNNNNNNNGG	3 cut(s)	548, 621, 662
AgsI	TTSAA	3 cut(s)	333, 471, 499
AjuI	GAANNNNNNNTTGG	2 cut(s)	163, 195
AluBI	AGCT	5 cut(s)	40, 212, 243, 467, 511
AluI	AGCT	5 cut(s)	40, 212, 243, 467, 511
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	305
AlwI	GGATC	5 cut(s)	452, 495, 533, 546, 647
ApeKI	GCWGC	2 cut(s)	5, 131
ApoI	RAATTY	1 cut(s)	520
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	624
AsuC2I	CCSGG	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	624
BamHI	GGATCC	1 cut(s)	538
BanI	GGYRCC	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	42
BarI	GAAGNNNNNNTAC	2 cut(s)	560, 592
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	17, 118
BceAI	ACGGC	1 cut(s)	30
BciVI	GTATCC	1 cut(s)	59
BclI	TGATCA	1 cut(s)	295
BcnI	CCSGG	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	2 cut(s)	26, 428
BfmI	CTRYAG	1 cut(s)	370
BfoI	RGCGCY	1 cut(s)	26
BfuI	GTATCC	1 cut(s)	59
BglII	AGATCT	1 cut(s)	635
BisI	GCNGC	2 cut(s)	6, 132
BlsI	GCNGC	2 cut(s)	7, 133
Bme1390I	CCNGG	1 cut(s)	73
Bme18I	GGWCC	1 cut(s)	624
BmgT120I	GGNCC	1 cut(s)	624
BmiI	GGNNCC	2 cut(s)	198, 540
BmrFI	CCNGG	1 cut(s)	73
BmsI	GCATC	1 cut(s)	619
BpuMI	CCSGG	1 cut(s)	73
BsaJI	CCNNGG	2 cut(s)	71, 358
BsaXI	ACNNNNNCTCC	8 cut(s)	145, 151, 157, 175, 181, 187, 375, 405
Bsc4I	CCNNNNNNNGG	3 cut(s)	548, 621, 662
Bse1I	ACTGG	1 cut(s)	485
Bse3DI	GCAATG	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	71, 358
BseGI	GGATG	1 cut(s)	595
BseLI	CCNNNNNNNGG	3 cut(s)	548, 621, 662
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	1 cut(s)	485
BseRI	GAGGAG	2 cut(s)	50, 82
BseXI	GCAGC	2 cut(s)	17, 118
BseYI	CCCAGC	2 cut(s)	208, 243
BshNI	GGYRCC	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	73
BslI	CCNNNNNNNGG	3 cut(s)	548, 621, 662
BsmAI	GTCTC	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp1407I	TGTACA	1 cut(s)	576
Bsp143I	GATC	7 cut(s)	295, 318, 444, 487, 538, 635, 652
BspACI	CCGC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	307
BspLI	GGNNCC	2 cut(s)	198, 540
BspPI	GGATC	5 cut(s)	452, 495, 533, 546, 647
BspT107I	GGYRCC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	57
BsrGI	TGTACA	1 cut(s)	576
BsrI	ACTGG	1 cut(s)	485
BssECI	CCNNGG	2 cut(s)	71, 358
BssMI	GATC	7 cut(s)	295, 318, 444, 487, 538, 635, 652
BssT1I	CCWWGG	1 cut(s)	358
BstAUI	TGTACA	1 cut(s)	576
BstDEI	CTNAG	1 cut(s)	315
BstENI	CCTNNNNNAGG	1 cut(s)	546
BstF5I	GGATG	1 cut(s)	595
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	7 cut(s)	298, 321, 447, 490, 541, 638, 655
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	7 cut(s)	295, 318, 444, 487, 538, 635, 652
BstMWI	GCNNNNNNNGC	1 cut(s)	490
BstSCI	CCNGG	1 cut(s)	71
BstSFI	CTRYAG	1 cut(s)	370
BstV1I	GCAGC	2 cut(s)	17, 118
BstX2I	RGATCY	3 cut(s)	487, 538, 635
BstYI	RGATCY	3 cut(s)	487, 538, 635
BsuI	GTATCC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	595
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	2 cut(s)	195, 656
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	624
Csp6I	GTAC	1 cut(s)	577
CviAII	CATG	3 cut(s)	350, 556, 621
CviQI	GTAC	1 cut(s)	577
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	7 cut(s)	297, 320, 446, 489, 540, 637, 654
DpnII	GATC	7 cut(s)	295, 318, 444, 487, 538, 635, 652
DraI	TTTAAA	1 cut(s)	670
EciI	GGCGGA	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	42
Eco32I	GATATC	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	624
Eco53kI	GAGCTC	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	40
EcoNI	CCTNNNNNAGG	1 cut(s)	546
EcoRV	GATATC	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	358
FaeI	CATG	3 cut(s)	353, 559, 624
FatI	CATG	3 cut(s)	349, 555, 620
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	2 cut(s)	6, 132
FokI	GGATG	1 cut(s)	602
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	2 cut(s)	6, 132
FspBI	CTAG	2 cut(s)	26, 428
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	2 cut(s)	6, 132
GsaI	CCCAGC	2 cut(s)	212, 247
HaeII	RGCGCY	1 cut(s)	26
HapII	CCGG	1 cut(s)	73
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	3 cut(s)	353, 559, 624
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HindIII	AAGCTT	1 cut(s)	465
HinfI	GANTC	2 cut(s)	76, 552
HpaII	CCGG	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	97, 216
Hpy188III	TCNNGA	5 cut(s)	52, 299, 410, 448, 639
HpyAV	CCTTC	5 cut(s)	187, 210, 529, 578, 655
HpyCH4V	TGCA	3 cut(s)	62, 349, 493
HpyF10VI	GCNNNNNNNGC	1 cut(s)	490
HpyF3I	CTNAG	1 cut(s)	315
Hsp92II	CATG	3 cut(s)	353, 559, 624
HspAI	GCGC	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	7 cut(s)	295, 318, 444, 487, 538, 635, 652
LmnI	GCTCC	3 cut(s)	37, 45, 247
Lsp1109I	GCAGC	2 cut(s)	17, 118
LweI	GCATC	1 cut(s)	619
MaeI	CTAG	2 cut(s)	26, 428
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	7 cut(s)	297, 320, 446, 489, 540, 637, 654
MboI	GATC	7 cut(s)	295, 318, 444, 487, 538, 635, 652
MboII	GAAGA	6 cut(s)	23, 26, 174, 280, 580, 605
MfeI	CAATTG	2 cut(s)	333, 609
MflI	RGATCY	3 cut(s)	487, 538, 635
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	8 cut(s)	106, 177, 217, 328, 333, 344, 520, 609
MmeI	TCCRAC	2 cut(s)	188, 194
MnlI	CCTC	5 cut(s)	28, 103, 121, 280, 496
MseI	TTAA	2 cut(s)	462, 669
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	1 cut(s)	73
MunI	CAATTG	2 cut(s)	333, 609
MwoI	GCNNNNNNNGC	1 cut(s)	490
NciI	CCSGG	1 cut(s)	73
NdeII	GATC	7 cut(s)	295, 318, 444, 487, 538, 635, 652
NlaIII	CATG	3 cut(s)	353, 559, 624
NlaIV	GGNNCC	2 cut(s)	198, 540
PfeI	GAWTC	2 cut(s)	76, 552
PflMI	CCANNNNNTGG	1 cut(s)	621
PkrI	GCNGC	2 cut(s)	7, 133
Psp124BI	GAGCTC	1 cut(s)	42
PspFI	CCCAGC	2 cut(s)	208, 243
PspN4I	GGNNCC	2 cut(s)	198, 540
PspPI	GGNCC	1 cut(s)	624
PsuI	RGATCY	3 cut(s)	487, 538, 635
PvuII	CAGCTG	1 cut(s)	243
RsaI	GTAC	1 cut(s)	578
RsaNI	GTAC	1 cut(s)	577
SacI	GAGCTC	1 cut(s)	42
SaqAI	TTAA	2 cut(s)	462, 669
SatI	GCNGC	2 cut(s)	6, 132
Sau3AI	GATC	7 cut(s)	295, 318, 444, 487, 538, 635, 652
Sau96I	GGNCC	1 cut(s)	624
ScrFI	CCNGG	1 cut(s)	73
SduI	GDGCHC	1 cut(s)	42
SfaNI	GCATC	1 cut(s)	619
SfcI	CTRYAG	1 cut(s)	370
SinI	GGWCC	1 cut(s)	624
Sse9I	AATT	8 cut(s)	106, 177, 217, 328, 333, 344, 520, 609
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	2 cut(s)	26, 428
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	71
StyI	CCWWGG	1 cut(s)	358
TaqII	GACCGA	1 cut(s)	641
TasI	AATT	8 cut(s)	106, 177, 217, 328, 333, 344, 520, 609
TatI	WGTACW	1 cut(s)	576
TfiI	GAWTC	2 cut(s)	76, 552
Tru1I	TTAA	2 cut(s)	462, 669
Tru9I	TTAA	2 cut(s)	462, 669
TscAI	CASTG	2 cut(s)	195, 663
TseI	GCWGC	2 cut(s)	5, 131
TspDTI	ATGAA	4 cut(s)	581, 597, 606, 614
TspRI	CASTG	2 cut(s)	195, 663
Van91I	CCANNNNNTGG	1 cut(s)	621
VpaK11BI	GGWCC	1 cut(s)	624
XagI	CCTNNNNNAGG	1 cut(s)	546
XapI	RAATTY	1 cut(s)	520
XspI	CTAG	2 cut(s)	26, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.