Rmu_ssc0000137.1_g000001

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000137.1
OG0005296
Physical Location & Seq
Forward (+)
2498 .. 6902
4405 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1509 bp
atggacgaccaagatcgaatcgtctccactggagagagacctattaagccagatgtcttgaaagagcagccagttttgcccaaagatgagaggatagcttcagcaaatccttctccagctgcagtcattacagggccttcacgcactgccacagaacaacccaagttttcagatgttgcaggagaacttagcaccacccatccactcaatttgtatggatccaatgaacagagttatggaagtagcagtggtacttgggatggatatcctcagtatatcaatactgatggaatgcatgttgtatcaccggtaatgtacagtgataatccatctcttctgtatcactctggttatggtttcaatcccgaaattgcatatggaccatattcaccggttgctacacctttggcttcttatttggtagatggccagctctattctccacaacaggtccccttctctccatcttattaccctcaaccatctcctccaagtctgtctcatattacttcagctattccagtgacaccaactgatcggatgacctcagaaagtagtagcactgacaacatggcctttgggccaggatcaggttactttgtaaattttagatcatttagtggaggagatctatctggaaatcttggttcgagccctttagcatctccagggatttaccctcagccaatgggcatacttggatcttatgagcacagtgttgggcagatttctcatccacagagatcaatgcatggatttggactggtatctagttcctttacagggcgctacccacataatacttctcatcagagctccaactttggtggtccttcttactcgtttggtaatgaccggagccgactgactgttgacaagggtagaagaagagatagggagtgggattcaatttccgttttcagtaattcacatgatatctccaatgaccgtaatcgaggaccaagggcttcaaagctgaaggacaagaacgtgtctgaccagggctcttcatctagtactaggaaaatggatctatctgcttctggaattaacctcgactcaattaacaggaaggattttgtcacagattatgaggaggcaaagttctttatcattaagtctttcagtgaggataatgttcataaaagtattaaatacagtgtttgggccagcactccccatggaaacaagaagcttgatgctgcttatcatgaggcgaagaggataaaaagcagctgtccagtctttctcttattttcggttaatgccagtggacagttttgcggagtagccgaaatgattggaccagtagactttggaaaagatgctgattactggcagcaagacaggtggaatggccaatttaaagttcagtggcacattattaaggatgttcctaacgttcgcttccgtcacattctacttgaaaataatgataataagcctgtcactcacagccgagattgtcaggaggtagtgaatctctctccatctgtcactttcatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

502

Amino Acids

55.29

Weight (kDa)

6.35

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 367 - 492 3.1e-46 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1311
AciI CCGC 1 cut(s) 1284
AclI AACGTT 1 cut(s) 1401
AclWI GGATC 5 cut(s) 213, 226, 595, 709, 1038
AcoI YGGCCR 2 cut(s) 427, 1357
AcsI RAATTY 1 cut(s) 604
AcuI CTGAAG 3 cut(s) 84, 495, 998
AfaI GTAC 3 cut(s) 253, 317, 1018
AfiI CCNNNNNNNGG 2 cut(s) 590, 783
AflIII ACRYGT 1 cut(s) 990
AgeI ACCGGT 2 cut(s) 307, 391
AgsI TTSAA 5 cut(s) 61, 361, 909, 972, 1427
AjnI CCWGG 3 cut(s) 583, 667, 999
AjuI GAANNNNNNNTTGG 2 cut(s) 1353, 1385
AloI GAACNNNNNNTCC 2 cut(s) 1088, 1120
AluBI AGCT 8 cut(s) 98, 119, 433, 515, 816, 976, 1195, 1236
AluI AGCT 8 cut(s) 98, 119, 433, 515, 816, 976, 1195, 1236
Alw21I GWGCWC 2 cut(s) 714, 818
Alw26I GTCTC 3 cut(s) 28, 31, 504
AlwI GGATC 5 cut(s) 213, 226, 595, 709, 1038
AoxI GGCC 6 cut(s) 134, 427, 573, 581, 1167, 1357
ApeKI GCWGC 5 cut(s) 67, 119, 1202, 1233, 1339
ApoI RAATTY 1 cut(s) 604
AsiGI ACCGGT 2 cut(s) 307, 391
AspLEI GCGC 1 cut(s) 789
AspS9I GGNCC 8 cut(s) 134, 380, 451, 581, 830, 959, 1167, 1304
AsuHPI GGTGA 2 cut(s) 297, 381
AvaII GGWCC 5 cut(s) 380, 451, 830, 959, 1304
BalI TGGCCA 2 cut(s) 429, 1359
BamHI GGATCC 1 cut(s) 218
BanII GRGCYC 3 cut(s) 656, 818, 1007
Bbv12I GWGCWC 2 cut(s) 714, 818
BbvCI CCTCAGC 1 cut(s) 681
BbvI GCAGC 5 cut(s) 79, 106, 1189, 1245, 1351
BccI CCATC 8 cut(s) 207, 254, 281, 337, 419, 472, 490, 1498
BciT130I CCWGG 3 cut(s) 585, 669, 1001
BcoDI GTCTC 3 cut(s) 28, 31, 504
BfaI CTAG 3 cut(s) 771, 1014, 1020
BfmI CTRYAG 1 cut(s) 120
BfoI RGCGCY 1 cut(s) 790
BglII AGATCT 1 cut(s) 628
BisI GCNGC 5 cut(s) 68, 120, 1203, 1234, 1340
BlsI GCNGC 5 cut(s) 69, 121, 1204, 1235, 1341
BmcAI AGTACT 1 cut(s) 1018
Bme1390I CCNGG 3 cut(s) 585, 669, 1001
Bme18I GGWCC 5 cut(s) 380, 451, 830, 959, 1304
BmgT120I GGNCC 8 cut(s) 134, 380, 451, 581, 830, 959, 1167, 1304
BmiI GGNNCC 3 cut(s) 220, 453, 860
BmrFI CCNGG 3 cut(s) 585, 669, 1001
BmsI GCATC 3 cut(s) 671, 1189, 1315
BpmI CTGGAG 3 cut(s) 51, 99, 651
Bpu10I CCTNAGC 1 cut(s) 681
BsaBI GATNNNNATC 1 cut(s) 264
BsaI GGTCTC 1 cut(s) 31
BsaJI CCNNGG 4 cut(s) 668, 962, 1000, 1180
BsaWI WCCGGW 3 cut(s) 307, 391, 855
BsaXI ACNNNNNCTCC 2 cut(s) 1088, 1118
Bsc4I CCNNNNNNNGG 2 cut(s) 590, 783
Bse118I RCCGGY 2 cut(s) 307, 391
Bse1I ACTGG 8 cut(s) 34, 71, 521, 768, 1241, 1269, 1307, 1340
Bse8I GATNNNNATC 1 cut(s) 264
BseBI CCWGG 3 cut(s) 585, 669, 1001
BseDI CCNNGG 4 cut(s) 668, 962, 1000, 1180
BseGI GGATG 5 cut(s) 199, 265, 546, 733, 1396
BseJI GATNNNNATC 1 cut(s) 264
BseLI CCNNNNNNNGG 2 cut(s) 590, 783
BseMII CTCAG 3 cut(s) 284, 561, 695
BseNI ACTGG 8 cut(s) 34, 71, 521, 768, 1241, 1269, 1307, 1340
BseRI GAGGAG 3 cut(s) 477, 639, 1109
BseXI GCAGC 5 cut(s) 79, 106, 1189, 1245, 1351
BshFI GGCC 6 cut(s) 136, 429, 575, 583, 1169, 1359
BshTI ACCGGT 2 cut(s) 307, 391
BsiHKAI GWGCWC 2 cut(s) 714, 818
BsiSI CCGG 3 cut(s) 308, 392, 856
BslFI GGGAC 1 cut(s) 437
BslI CCNNNNNNNGG 2 cut(s) 590, 783
BsmAI GTCTC 3 cut(s) 28, 31, 504
BsmBI CGTCTC 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 437
BsmI GAATGC 1 cut(s) 297
BsnI GGCC 6 cut(s) 136, 429, 575, 583, 1169, 1359
Bso31I GGTCTC 1 cut(s) 31
Bsp1286I GDGCHC 4 cut(s) 656, 714, 818, 1007
Bsp1407I TGTACA 1 cut(s) 315
Bsp143I GATC 9 cut(s) 13, 218, 535, 587, 611, 628, 701, 743, 1030
Bsp19I CCATGG 1 cut(s) 1180
BspACI CCGC 1 cut(s) 1284
BspANI GGCC 6 cut(s) 136, 429, 575, 583, 1169, 1359
BspCNI CTCAG 3 cut(s) 283, 560, 694
BspHI TCATGA 1 cut(s) 1210
BspLI GGNNCC 3 cut(s) 220, 453, 860
BspMAI CTGCAG 1 cut(s) 124
BspPI GGATC 5 cut(s) 213, 226, 595, 709, 1038
BspQI GCTCTTC 1 cut(s) 1012
BspTNI GGTCTC 1 cut(s) 31
BsrFI RCCGGY 2 cut(s) 307, 391
BsrGI TGTACA 1 cut(s) 315
BsrI ACTGG 8 cut(s) 34, 71, 521, 768, 1241, 1269, 1307, 1340
BssAI RCCGGY 2 cut(s) 307, 391
BssECI CCNNGG 4 cut(s) 668, 962, 1000, 1180
BssMI GATC 9 cut(s) 13, 218, 535, 587, 611, 628, 701, 743, 1030
BssT1I CCWWGG 2 cut(s) 962, 1180
Bst2UI CCWGG 3 cut(s) 585, 669, 1001
Bst4CI ACNGT 6 cut(s) 320, 716, 871, 950, 1160, 1278
Bst6I CTCTTC 4 cut(s) 339, 883, 1012, 1214
BstAUI TGTACA 1 cut(s) 315
BstC8I GCNNGC 2 cut(s) 431, 1171
BstDEI CTNAG 4 cut(s) 188, 270, 547, 681
BstDSI CCRYGG 1 cut(s) 1180
BstF5I GGATG 5 cut(s) 199, 265, 546, 733, 1396
BstH2I RGCGCY 1 cut(s) 790
BstHHI GCGC 1 cut(s) 789
BstKTI GATC 9 cut(s) 16, 221, 538, 590, 614, 631, 704, 746, 1033
BstMAI GTCTC 3 cut(s) 28, 31, 504
BstMBI GATC 9 cut(s) 13, 218, 535, 587, 611, 628, 701, 743, 1030
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNI CCWGG 3 cut(s) 585, 669, 1001
BstNSI RCATGY 1 cut(s) 299
BstSCI CCNGG 3 cut(s) 583, 667, 999
BstSFI CTRYAG 1 cut(s) 120
BstV1I GCAGC 5 cut(s) 79, 106, 1189, 1245, 1351
BstX2I RGATCY 4 cut(s) 218, 628, 701, 1030
BstYI RGATCY 4 cut(s) 218, 628, 701, 1030
BsuRI GGCC 6 cut(s) 136, 429, 575, 583, 1169, 1359
BtgI CCRYGG 1 cut(s) 1180
BtsCI GGATG 5 cut(s) 199, 265, 546, 733, 1396
BtsI GCAGTG 2 cut(s) 144, 253
Cac8I GCNNGC 2 cut(s) 431, 1171
CciI TCATGA 1 cut(s) 1210
CfoI GCGC 1 cut(s) 789
Cfr10I RCCGGY 2 cut(s) 307, 391
Cfr13I GGNCC 8 cut(s) 134, 380, 451, 581, 830, 959, 1167, 1304
Csp6I GTAC 3 cut(s) 252, 316, 1017
CspAI ACCGGT 2 cut(s) 307, 391
CspCI CAANNNNNGTGG 6 cut(s) 192, 227, 808, 843, 1331, 1366
CviAII CATG 6 cut(s) 296, 571, 752, 932, 1181, 1211
CviQI GTAC 3 cut(s) 252, 316, 1017
DdeI CTNAG 4 cut(s) 188, 270, 547, 681
DpnI GATC 9 cut(s) 15, 220, 537, 589, 613, 630, 703, 745, 1032
DpnII GATC 9 cut(s) 13, 218, 535, 587, 611, 628, 701, 743, 1030
DraI TTTAAA 1 cut(s) 1366
EaeI YGGCCR 2 cut(s) 427, 1357
Eam1104I CTCTTC 4 cut(s) 339, 883, 1012, 1214
EarI CTCTTC 4 cut(s) 339, 883, 1012, 1214
Ecl136II GAGCTC 1 cut(s) 816
Eco130I CCWWGG 2 cut(s) 962, 1180
Eco24I GRGCYC 3 cut(s) 656, 818, 1007
Eco31I GGTCTC 1 cut(s) 31
Eco32I GATATC 2 cut(s) 266, 937
Eco47I GGWCC 5 cut(s) 380, 451, 830, 959, 1304
Eco53kI GAGCTC 1 cut(s) 816
Eco57I CTGAAG 3 cut(s) 84, 495, 998
EcoICRI GAGCTC 1 cut(s) 816
EcoO109I RGGNCCY 2 cut(s) 134, 451
EcoRII CCWGG 3 cut(s) 583, 667, 999
EcoRV GATATC 2 cut(s) 266, 937
EcoT14I CCWWGG 2 cut(s) 962, 1180
EcoT22I ATGCAT 2 cut(s) 297, 753
EcoT38I GRGCYC 3 cut(s) 656, 818, 1007
ErhI CCWWGG 2 cut(s) 962, 1180
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 6 cut(s) 299, 574, 755, 935, 1184, 1214
FaqI GGGAC 1 cut(s) 437
FatI CATG 6 cut(s) 295, 570, 751, 931, 1180, 1210
FauNDI CATATG 1 cut(s) 376
FblI GTMKAC 1 cut(s) 1311
Fnu4HI GCNGC 5 cut(s) 68, 120, 1203, 1234, 1340
FokI GGATG 5 cut(s) 186, 272, 553, 720, 1403
FriOI GRGCYC 3 cut(s) 656, 818, 1007
Fsp4HI GCNGC 5 cut(s) 68, 120, 1203, 1234, 1340
FspBI CTAG 3 cut(s) 771, 1014, 1020
GlaI GCGC 1 cut(s) 788
GluI GCNGC 5 cut(s) 68, 120, 1203, 1234, 1340
GsuI CTGGAG 3 cut(s) 51, 99, 651
HaeII RGCGCY 1 cut(s) 790
HaeIII GGCC 6 cut(s) 136, 429, 575, 583, 1169, 1359
HapII CCGG 3 cut(s) 308, 392, 856
HhaI GCGC 1 cut(s) 789
Hin1II CATG 6 cut(s) 299, 574, 755, 935, 1184, 1214
Hin6I GCGC 1 cut(s) 787
HinP1I GCGC 1 cut(s) 787
HincII GTYRAC 1 cut(s) 874
HindII GTYRAC 1 cut(s) 874
HindIII AAGCTT 1 cut(s) 1193
HinfI GANTC 4 cut(s) 18, 905, 1058, 1480
HpaII CCGG 3 cut(s) 308, 392, 856
HphI GGTGA 2 cut(s) 297, 381
Hpy166II GTNNAC 3 cut(s) 874, 1274, 1312
Hpy188I TCNGA 5 cut(s) 172, 540, 550, 813, 997
Hpy188III TCNNGA 6 cut(s) 58, 365, 636, 1044, 1211, 1469
Hpy8I GTNNAC 3 cut(s) 874, 1274, 1312
HpyAV CCTTC 6 cut(s) 120, 147, 466, 843, 973, 1066
HpyCH4III ACNGT 6 cut(s) 320, 716, 871, 950, 1160, 1278
HpyCH4IV ACGT 2 cut(s) 990, 1401
HpyCH4V TGCA 5 cut(s) 122, 179, 295, 374, 751
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 4 cut(s) 188, 270, 547, 681
HpySE526I ACGT 2 cut(s) 990, 1401
Hsp92II CATG 6 cut(s) 299, 574, 755, 935, 1184, 1214
HspAI GCGC 1 cut(s) 787
Kzo9I GATC 9 cut(s) 13, 218, 535, 587, 611, 628, 701, 743, 1030
LguI GCTCTTC 1 cut(s) 1012
LmnI GCTCC 2 cut(s) 821, 858
Lsp1109I GCAGC 5 cut(s) 79, 106, 1189, 1245, 1351
LweI GCATC 3 cut(s) 671, 1189, 1315
MaeI CTAG 3 cut(s) 771, 1014, 1020
MaeII ACGT 2 cut(s) 990, 1401
MaeIII GTNAC 6 cut(s) 523, 593, 1081, 1412, 1447, 1495
MalI GATC 9 cut(s) 15, 220, 537, 589, 613, 630, 703, 745, 1032
MboI GATC 9 cut(s) 13, 218, 535, 587, 611, 628, 701, 743, 1030
MboII GAAGA 5 cut(s) 326, 897, 900, 999, 1231
MflI RGATCY 4 cut(s) 218, 628, 701, 1030
MhlI GDGCHC 4 cut(s) 656, 714, 818, 1007
MlsI TGGCCA 2 cut(s) 429, 1359
MluCI AATT 8 cut(s) 208, 369, 604, 909, 925, 1047, 1062, 1361
MluNI TGGCCA 2 cut(s) 429, 1359
MlyI GAGTC 1 cut(s) 1052
MmeI TCCRAC 1 cut(s) 843
Mox20I TGGCCA 2 cut(s) 429, 1359
Mph1103I ATGCAT 2 cut(s) 297, 753
MscI TGGCCA 2 cut(s) 429, 1359
MseI TTAA 8 cut(s) 45, 1050, 1065, 1116, 1152, 1263, 1365, 1386
Msp20I TGGCCA 2 cut(s) 429, 1359
MspA1I CMGCKG 2 cut(s) 119, 1236
MspI CCGG 3 cut(s) 308, 392, 856
MspR9I CCNGG 3 cut(s) 585, 669, 1001
Mva1269I GAATGC 1 cut(s) 297
MvaI CCWGG 3 cut(s) 585, 669, 1001
MwoI GCNNNNNNNGC 1 cut(s) 76
NcoI CCATGG 1 cut(s) 1180
NdeI CATATG 1 cut(s) 376
NdeII GATC 9 cut(s) 13, 218, 535, 587, 611, 628, 701, 743, 1030
NlaIII CATG 6 cut(s) 299, 574, 755, 935, 1184, 1214
NlaIV GGNNCC 3 cut(s) 220, 453, 860
NmeAIII GCCGAG 1 cut(s) 1484
NmuCI GTSAC 5 cut(s) 523, 1081, 1412, 1447, 1495
NsiI ATGCAT 2 cut(s) 297, 753
NspI RCATGY 1 cut(s) 299
PagI TCATGA 1 cut(s) 1210
PciSI GCTCTTC 1 cut(s) 1012
PctI GAATGC 1 cut(s) 297
PfeI GAWTC 3 cut(s) 18, 905, 1480
PinAI ACCGGT 2 cut(s) 307, 391
PkrI GCNGC 5 cut(s) 69, 121, 1204, 1235, 1341
PleI GAGTC 1 cut(s) 1052
PpsI GAGTC 1 cut(s) 1052
PpuMI RGGWCCY 1 cut(s) 451
Psp124BI GAGCTC 1 cut(s) 818
Psp1406I AACGTT 1 cut(s) 1401
Psp5II RGGWCCY 1 cut(s) 451
Psp6I CCWGG 3 cut(s) 583, 667, 999
PspGI CCWGG 3 cut(s) 583, 667, 999
PspN4I GGNNCC 3 cut(s) 220, 453, 860
PspPI GGNCC 8 cut(s) 134, 380, 451, 581, 830, 959, 1167, 1304
PspPPI RGGWCCY 1 cut(s) 451
PstI CTGCAG 1 cut(s) 124
PsuI RGATCY 4 cut(s) 218, 628, 701, 1030
PvuII CAGCTG 2 cut(s) 119, 1236
RsaI GTAC 3 cut(s) 253, 317, 1018
RsaNI GTAC 3 cut(s) 252, 316, 1017
SacI GAGCTC 1 cut(s) 818
SapI GCTCTTC 1 cut(s) 1012
SaqAI TTAA 8 cut(s) 45, 1050, 1065, 1116, 1152, 1263, 1365, 1386
SatI GCNGC 5 cut(s) 68, 120, 1203, 1234, 1340
Sau3AI GATC 9 cut(s) 13, 218, 535, 587, 611, 628, 701, 743, 1030
Sau96I GGNCC 8 cut(s) 134, 380, 451, 581, 830, 959, 1167, 1304
ScaI AGTACT 1 cut(s) 1018
SchI GAGTC 1 cut(s) 1052
ScrFI CCNGG 3 cut(s) 585, 669, 1001
SduI GDGCHC 4 cut(s) 656, 714, 818, 1007
SfaNI GCATC 3 cut(s) 671, 1189, 1315
SfcI CTRYAG 1 cut(s) 120
SinI GGWCC 5 cut(s) 380, 451, 830, 959, 1304
Sse9I AATT 8 cut(s) 208, 369, 604, 909, 925, 1047, 1062, 1361
SsiI CCGC 1 cut(s) 1284
SspMI CTAG 3 cut(s) 771, 1014, 1020
SstI GAGCTC 1 cut(s) 818
StyD4I CCNGG 3 cut(s) 583, 667, 999
StyI CCWWGG 2 cut(s) 962, 1180
TaaI ACNGT 6 cut(s) 320, 716, 871, 950, 1160, 1278
TaiI ACGT 2 cut(s) 993, 1404
TaqI TCGA 4 cut(s) 16, 650, 955, 1056
TasI AATT 8 cut(s) 208, 369, 604, 909, 925, 1047, 1062, 1361
TatI WGTACW 2 cut(s) 315, 1016
TfiI GAWTC 3 cut(s) 18, 905, 1480
Tru1I TTAA 8 cut(s) 45, 1050, 1065, 1116, 1152, 1263, 1365, 1386
Tru9I TTAA 8 cut(s) 45, 1050, 1065, 1116, 1152, 1263, 1365, 1386
TseFI GTSAC 5 cut(s) 523, 1081, 1412, 1447, 1495
TseI GCWGC 5 cut(s) 67, 119, 1202, 1233, 1339
Tsp45I GTSAC 5 cut(s) 523, 1081, 1412, 1447, 1495
TspDTI ATGAA 4 cut(s) 240, 999, 1130, 1492
TspGWI ACGGA 2 cut(s) 904, 1400
VpaK11BI GGWCC 5 cut(s) 380, 451, 830, 959, 1304
XapI RAATTY 1 cut(s) 604
XceI RCATGY 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 1311
XspI CTAG 3 cut(s) 771, 1014, 1020
ZrmI AGTACT 1 cut(s) 1018
Zsp2I ATGCAT 2 cut(s) 297, 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.