Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000193.1

Orthogroup ID

OG0004412

Physical Location & Seq

Genomic Coordinates Reverse (-)

28539 .. 30249

Gene Structure 1711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

atggagccagtgtctaatggcaagttaggctttgataacgtgagggtgggtgccttgctagttctggccatctcagctccactttcacaagaacgtgattgcagtatcccacctagtatattttcttatgcagttacatacctgggaaggatttctcatgctttgagtgacattattcatcaagagggcctgttgaattacttgtctcaatgcagtagatcctctggaccatatgatatggagtttgacttcagcgcgaaaagaggtggaacctctgaaatcttgtctccaacagttaagaaaccaagggaggctggaaattctcttgtagagtacagtctagatgtgcaagatgaagtgaccaagtcaatgaatgttgttcttgaaaaggtgaaggatatctggccattggtacaagctggattcatgactgaaggactcaagactttaagaagttgcagggaagaattggcaacattgacgtctggctctattgcatctggtggtagctttgcctttacgatgcagtatatcaagatcatgaaactgcttgcaaaggcatgggtgaacttcgtgccttcaagacaccttccttctagcgggatgggagacttggactttgtgttgggaaagctagacgcaaggcttagtgaactgaaaagtacgtttataggattgtctacagtggaagagttgcatattttggagctggtacttgtgacttgtatgctcaagctttctaaagttgaaatttgctgccatcttggtactttgagaaagctctcttgtacaatggcacatgcggaatctctccttgaagatggaactgttgaaccatccaggtttatgattgaagtcagaaaattattatctgaaattgggacatctctcaatggtagttcctgtaatccaattctttttagaagagtactggaaagtttcttccttgagcggcttgtgttatgtggtggactaaagcacataaaggcagatctggacatacctgacaatgactacgaacatcctctttgctttgtcgcagggttgcccgttggtataccatgccacatcactcttcataatgtttcggttgaaagcagattatggctcaaaatgactgccaatggacttgatgatactcagtttgtctccttggattcaaacctctttggaggctgcgatgatcatagagtagttgtgtttaccgcaccattttacaaaaccccgaaagcattttcttttacagtcagcgtttgcatttgtatggaatatttgtctgaggatgaggatgtgtcttttctcaaacgttgtggacctagacatgagcttgcatctctttgccgagaaaaggaagtttttctttctatggtcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009956 GO:0009987 GO:0010467 GO:0010496 GO:0012505 GO:0016070 GO:0016073 GO:0016180 GO:0022622 GO:0031123 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0034470 GO:0034472 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043628 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0071704 GO:0090057 GO:0090304 GO:0097708 GO:0099402 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

458

Amino Acids

50.66

Weight (kDa)

5.79

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
INTS4_C	PF25458	334 - 454	5e-11	Integrator subunit 4 family C-terminal Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08800 AT3G08800 AT3G08800
fragaria_vesca	FvH4_6g10600 FvH4_6g10600 FvH4_6g10600 FvH4_6g10600 FvH4_6g10600
malus_domestica	MD04G1166800.v1.1
prunus_persica	Prupe.6G285000_v2.0.a1 Prupe.6G285000_v2.0.a1
pyrus_communis	pycom01g05880 pycom04g14820
rosa_chinensis	RchiOBHm_Chr3g0461591 RchiOBHm_Chr3g0461601
rosa_laevigata	RLG00000024915
rosa_multiflora	Rmu_co8098260.1_g000001 Rmu_sc0003578.1_g000001 Rmu_sc0032177.1_g000001 Rmu_sc0040016.1_g000001 Rmu_ssc0000193.1_g000007
rosa_roxburghii	Rroxscaffold_6G00418110 Rroxscaffold_6G00418480
rosa_rugosa	Rorug03G0052200 Rorug03G0052200 Rorug03G0052300 Rorug03G0052300
rosa_samantha	Rh3AG110400 Rh3BG113600 Rh3CG115500 Rh3DG115300
rosa_wichuraiana	Rw3G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	485
AccB1I	GGYRCC	1 cut(s)	50
AccBSI	CCGCTC	1 cut(s)	952
AccI	GTMKAC	2 cut(s)	680, 1057
AccII	CGCG	1 cut(s)	257
AciI	CCGC	4 cut(s)	600, 803, 952, 1206
AclI	AACGTT	1 cut(s)	1306
AclWI	GGATC	1 cut(s)	213
AcoI	YGGCCR	2 cut(s)	66, 404
AcsI	RAATTY	2 cut(s)	319, 750
AcuI	CTGAAG	2 cut(s)	235, 453
AcyI	GRCGYC	1 cut(s)	482
AfaI	GTAC	7 cut(s)	335, 414, 664, 714, 769, 790, 930
AfiI	CCNNNNNNNGG	2 cut(s)	599, 1348
AgsI	TTSAA	9 cut(s)	196, 386, 582, 749, 818, 833, 854, 1094, 1161
AjnI	CCWGG	2 cut(s)	141, 839
AluBI	AGCT	8 cut(s)	77, 419, 510, 634, 709, 736, 781, 1327
AluI	AGCT	8 cut(s)	77, 419, 510, 634, 709, 736, 781, 1327
Alw26I	GTCTC	4 cut(s)	210, 291, 603, 1153
AlwI	GGATC	1 cut(s)	213
AoxI	GGCC	3 cut(s)	66, 187, 404
ApeKI	GCWGC	2 cut(s)	756, 1176
ApoI	RAATTY	2 cut(s)	319, 750
ArsI	GACNNNNNNTTYG	2 cut(s)	602, 634
Asp700I	GAANNNNTTC	2 cut(s)	151, 1356
AspLEI	GCGC	1 cut(s)	257
AspS9I	GGNCC	3 cut(s)	187, 227, 1313
AsuHPI	GGTGA	2 cut(s)	403, 577
AvaII	GGWCC	2 cut(s)	227, 1313
BalI	TGGCCA	2 cut(s)	68, 406
BanI	GGYRCC	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	743, 1163
BccI	CCATC	5 cut(s)	77, 598, 768, 815, 844
BciT130I	CCWGG	2 cut(s)	143, 841
BciVI	GTATCC	1 cut(s)	116
BclI	TGATCA	1 cut(s)	1183
BcoDI	GTCTC	4 cut(s)	210, 291, 603, 1153
BfaI	CTAG	6 cut(s)	59, 114, 341, 597, 635, 1317
BfmI	CTRYAG	1 cut(s)	681
BfuI	GTATCC	1 cut(s)	116
BglII	AGATCT	1 cut(s)	991
BisI	GCNGC	3 cut(s)	757, 953, 1177
BlsI	GCNGC	3 cut(s)	758, 954, 1178
BmcAI	AGTACT	1 cut(s)	930
Bme1390I	CCNGG	2 cut(s)	143, 841
Bme18I	GGWCC	2 cut(s)	227, 1313
BmgT120I	GGNCC	3 cut(s)	187, 227, 1313
BmiI	GGNNCC	3 cut(s)	6, 52, 271
BmrFI	CCNGG	2 cut(s)	143, 841
BmsI	GCATC	3 cut(s)	506, 513, 1340
BpuEI	CTTGAG	3 cut(s)	425, 716, 968
BsaHI	GRCGYC	1 cut(s)	482
BsaJI	CCNNGG	3 cut(s)	142, 305, 1152
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	599, 1348
Bse1I	ACTGG	2 cut(s)	8, 936
BseBI	CCWGG	2 cut(s)	143, 841
BseDI	CCNNGG	3 cut(s)	142, 305, 1152
BseGI	GGATG	5 cut(s)	609, 836, 1021, 1288, 1294
BseLI	CCNNNNNNNGG	2 cut(s)	599, 1348
BseMII	CTCAG	3 cut(s)	87, 1154, 1269
BseNI	ACTGG	2 cut(s)	8, 936
BseXI	GCAGC	2 cut(s)	743, 1163
Bsh1236I	CGCG	1 cut(s)	257
BshFI	GGCC	3 cut(s)	68, 189, 406
BshNI	GGYRCC	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	895
BslI	CCNNNNNNNGG	2 cut(s)	599, 1348
BsmAI	GTCTC	4 cut(s)	210, 291, 603, 1153
BsmFI	GGGAC	1 cut(s)	895
BsnI	GGCC	3 cut(s)	68, 189, 406
Bsp1407I	TGTACA	1 cut(s)	788
Bsp143I	GATC	4 cut(s)	218, 537, 991, 1183
BspACI	CCGC	4 cut(s)	600, 803, 952, 1206
BspANI	GGCC	3 cut(s)	68, 189, 406
BspCNI	CTCAG	3 cut(s)	86, 1153, 1270
BspFNI	CGCG	1 cut(s)	257
BspHI	TCATGA	2 cut(s)	426, 540
BspLI	GGNNCC	3 cut(s)	6, 52, 271
BspPI	GGATC	1 cut(s)	213
BspT107I	GGYRCC	1 cut(s)	50
BsrBI	CCGCTC	1 cut(s)	952
BsrGI	TGTACA	1 cut(s)	788
BsrI	ACTGG	2 cut(s)	8, 936
BssECI	CCNNGG	3 cut(s)	142, 305, 1152
BssMI	GATC	4 cut(s)	218, 537, 991, 1183
BssNAI	GTATAC	1 cut(s)	1058
BssNI	GRCGYC	1 cut(s)	482
BssT1I	CCWWGG	2 cut(s)	305, 1152
Bst1107I	GTATAC	1 cut(s)	1058
Bst2UI	CCWGG	2 cut(s)	143, 841
Bst4CI	ACNGT	5 cut(s)	295, 338, 685, 829, 1246
Bst6I	CTCTTC	3 cut(s)	684, 919, 1080
BstACI	GRCGYC	1 cut(s)	482
BstAUI	TGTACA	1 cut(s)	788
BstC8I	GCNNGC	2 cut(s)	552, 1329
BstDEI	CTNAG	4 cut(s)	73, 647, 1140, 1278
BstF5I	GGATG	5 cut(s)	609, 836, 1021, 1288, 1294
BstFNI	CGCG	1 cut(s)	257
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	4 cut(s)	221, 540, 994, 1186
BstMAI	GTCTC	4 cut(s)	210, 291, 603, 1153
BstMBI	GATC	4 cut(s)	218, 537, 991, 1183
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 74
BstNI	CCWGG	2 cut(s)	143, 841
BstNSI	RCATGY	1 cut(s)	803
BstSCI	CCNGG	2 cut(s)	141, 839
BstSFI	CTRYAG	1 cut(s)	681
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	2 cut(s)	743, 1163
BstX2I	RGATCY	2 cut(s)	218, 991
BstYI	RGATCY	2 cut(s)	218, 991
BstZ17I	GTATAC	1 cut(s)	1058
BsuI	GTATCC	1 cut(s)	116
BsuRI	GGCC	3 cut(s)	68, 189, 406
BtgZI	GCGATG	1 cut(s)	1194
BtsCI	GGATG	5 cut(s)	609, 836, 1021, 1288, 1294
BtsIMutI	CAGTG	2 cut(s)	15, 690
Cac8I	GCNNGC	2 cut(s)	552, 1329
CciI	TCATGA	2 cut(s)	426, 540
CfoI	GCGC	1 cut(s)	257
Cfr13I	GGNCC	3 cut(s)	187, 227, 1313
CseI	GACGC	1 cut(s)	647
Csp6I	GTAC	7 cut(s)	334, 413, 663, 713, 768, 789, 929
CspCI	CAANNNNNGTGG	2 cut(s)	1291, 1326
CviAII	CATG	7 cut(s)	158, 427, 541, 561, 800, 1062, 1322
CviQI	GTAC	7 cut(s)	334, 413, 663, 713, 768, 789, 929
DdeI	CTNAG	4 cut(s)	73, 647, 1140, 1278
DpnI	GATC	4 cut(s)	220, 539, 993, 1185
DpnII	GATC	4 cut(s)	218, 537, 991, 1183
EaeI	YGGCCR	2 cut(s)	66, 404
Eam1104I	CTCTTC	3 cut(s)	684, 919, 1080
EarI	CTCTTC	3 cut(s)	684, 919, 1080
Eco130I	CCWWGG	2 cut(s)	305, 1152
Eco32I	GATATC	1 cut(s)	400
Eco47I	GGWCC	2 cut(s)	227, 1313
Eco57I	CTGAAG	2 cut(s)	235, 453
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	141, 839
EcoRV	GATATC	1 cut(s)	400
EcoT14I	CCWWGG	2 cut(s)	305, 1152
ErhI	CCWWGG	2 cut(s)	305, 1152
FaeI	CATG	7 cut(s)	161, 430, 544, 564, 803, 1065, 1325
FalI	AAGNNNNNCTT	4 cut(s)	14, 46, 1344, 1376
FaqI	GGGAC	1 cut(s)	895
FatI	CATG	7 cut(s)	157, 426, 540, 560, 799, 1061, 1321
FauI	CCCGC	1 cut(s)	593
FauNDI	CATATG	1 cut(s)	232
FbaI	TGATCA	1 cut(s)	1183
FblI	GTMKAC	2 cut(s)	680, 1057
Fnu4HI	GCNGC	3 cut(s)	757, 953, 1177
FokI	GGATG	5 cut(s)	616, 823, 1008, 1295, 1301
Fsp4HI	GCNGC	3 cut(s)	757, 953, 1177
FspBI	CTAG	6 cut(s)	59, 114, 341, 597, 635, 1317
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	3 cut(s)	757, 953, 1177
HaeIII	GGCC	3 cut(s)	68, 189, 406
HgaI	GACGC	1 cut(s)	647
HhaI	GCGC	1 cut(s)	257
Hin1I	GRCGYC	1 cut(s)	482
Hin1II	CATG	7 cut(s)	161, 430, 544, 564, 803, 1065, 1325
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HindIII	AAGCTT	1 cut(s)	734
HinfI	GANTC	4 cut(s)	423, 438, 806, 1157
HphI	GGTGA	2 cut(s)	403, 577
Hpy166II	GTNNAC	7 cut(s)	568, 653, 681, 971, 1058, 1203, 1313
Hpy188I	TCNGA	4 cut(s)	277, 860, 874, 1279
Hpy8I	GTNNAC	7 cut(s)	568, 653, 681, 971, 1058, 1203, 1313
HpyAV	CCTTC	6 cut(s)	141, 388, 428, 588, 599, 603
HpyCH4III	ACNGT	5 cut(s)	295, 338, 685, 829, 1246
HpyCH4IV	ACGT	5 cut(s)	39, 94, 482, 665, 1306
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 74
HpyF3I	CTNAG	4 cut(s)	73, 647, 1140, 1278
HpySE526I	ACGT	5 cut(s)	39, 94, 482, 665, 1306
Hsp92I	GRCGYC	1 cut(s)	482
Hsp92II	CATG	7 cut(s)	161, 430, 544, 564, 803, 1065, 1325
HspAI	GCGC	1 cut(s)	255
Ksp22I	TGATCA	1 cut(s)	1183
Kzo9I	GATC	4 cut(s)	218, 537, 991, 1183
LmnI	GCTCC	3 cut(s)	4, 82, 706
Lsp1109I	GCAGC	2 cut(s)	743, 1163
LweI	GCATC	3 cut(s)	506, 513, 1340
MaeI	CTAG	6 cut(s)	59, 114, 341, 597, 635, 1317
MaeII	ACGT	5 cut(s)	39, 94, 482, 665, 1306
MaeIII	GTNAC	4 cut(s)	133, 167, 358, 718
MalI	GATC	4 cut(s)	220, 539, 993, 1185
MbiI	CCGCTC	1 cut(s)	952
MboI	GATC	4 cut(s)	218, 537, 991, 1183
MboII	GAAGA	6 cut(s)	476, 701, 830, 934, 936, 1067
MflI	RGATCY	2 cut(s)	218, 991
MlsI	TGGCCA	2 cut(s)	68, 406
MluCI	AATT	7 cut(s)	196, 319, 467, 750, 863, 876, 912
MluNI	TGGCCA	2 cut(s)	68, 406
MlyI	GAGTC	1 cut(s)	432
MmeI	TCCRAC	1 cut(s)	314
Mox20I	TGGCCA	2 cut(s)	68, 406
MroXI	GAANNNNTTC	2 cut(s)	151, 1356
MscI	TGGCCA	2 cut(s)	68, 406
MseI	TTAA	2 cut(s)	297, 449
MslI	CAYNNNNRTG	1 cut(s)	1262
Msp20I	TGGCCA	2 cut(s)	68, 406
MspR9I	CCNGG	2 cut(s)	143, 841
MvaI	CCWGG	2 cut(s)	143, 841
MvnI	CGCG	1 cut(s)	257
MwoI	GCNNNNNNNGC	2 cut(s)	27, 74
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	4 cut(s)	218, 537, 991, 1183
NlaIII	CATG	7 cut(s)	161, 430, 544, 564, 803, 1065, 1325
NlaIV	GGNNCC	3 cut(s)	6, 52, 271
NmeAIII	GCCGAG	1 cut(s)	1367
NmuCI	GTSAC	3 cut(s)	167, 358, 718
NspI	RCATGY	1 cut(s)	803
PagI	TCATGA	2 cut(s)	426, 540
PdmI	GAANNNNTTC	2 cut(s)	151, 1356
PfeI	GAWTC	3 cut(s)	423, 806, 1157
PflFI	GACNNNGTC	1 cut(s)	364
PkrI	GCNGC	3 cut(s)	758, 954, 1178
PleI	GAGTC	1 cut(s)	432
PpsI	GAGTC	1 cut(s)	432
Psp1406I	AACGTT	1 cut(s)	1306
Psp6I	CCWGG	2 cut(s)	141, 839
PspGI	CCWGG	2 cut(s)	141, 839
PspN4I	GGNNCC	3 cut(s)	6, 52, 271
PspPI	GGNCC	3 cut(s)	187, 227, 1313
PsuI	RGATCY	2 cut(s)	218, 991
PsyI	GACNNNGTC	1 cut(s)	364
RsaI	GTAC	7 cut(s)	335, 414, 664, 714, 769, 790, 930
RsaNI	GTAC	7 cut(s)	334, 413, 663, 713, 768, 789, 929
RseI	CAYNNNNRTG	1 cut(s)	1262
SaqAI	TTAA	2 cut(s)	297, 449
SatI	GCNGC	3 cut(s)	757, 953, 1177
Sau3AI	GATC	4 cut(s)	218, 537, 991, 1183
Sau96I	GGNCC	3 cut(s)	187, 227, 1313
ScaI	AGTACT	1 cut(s)	930
SchI	GAGTC	1 cut(s)	432
ScrFI	CCNGG	2 cut(s)	143, 841
SfaNI	GCATC	3 cut(s)	506, 513, 1340
SfcI	CTRYAG	1 cut(s)	681
SinI	GGWCC	2 cut(s)	227, 1313
SmiMI	CAYNNNNRTG	1 cut(s)	1262
SmlI	CTYRAG	3 cut(s)	440, 731, 947
SmoI	CTYRAG	3 cut(s)	440, 731, 947
Sse9I	AATT	7 cut(s)	196, 319, 467, 750, 863, 876, 912
SsiI	CCGC	4 cut(s)	600, 803, 952, 1206
SspI	AATATT	1 cut(s)	1271
SspMI	CTAG	6 cut(s)	59, 114, 341, 597, 635, 1317
StyD4I	CCNGG	2 cut(s)	141, 839
StyI	CCWWGG	2 cut(s)	305, 1152
TaaI	ACNGT	5 cut(s)	295, 338, 685, 829, 1246
TaiI	ACGT	5 cut(s)	42, 97, 485, 668, 1309
TasI	AATT	7 cut(s)	196, 319, 467, 750, 863, 876, 912
TatI	WGTACW	3 cut(s)	333, 788, 928
TauI	GCSGC	1 cut(s)	955
TfiI	GAWTC	3 cut(s)	423, 806, 1157
Tru1I	TTAA	2 cut(s)	297, 449
Tru9I	TTAA	2 cut(s)	297, 449
TscAI	CASTG	2 cut(s)	15, 690
TseFI	GTSAC	3 cut(s)	167, 358, 718
TseI	GCWGC	2 cut(s)	756, 1176
Tsp45I	GTSAC	3 cut(s)	167, 358, 718
TspDTI	ATGAA	6 cut(s)	167, 369, 386, 415, 557, 1067
TspRI	CASTG	2 cut(s)	15, 690
Tth111I	GACNNNGTC	1 cut(s)	364
VpaK11BI	GGWCC	2 cut(s)	227, 1313
XapI	RAATTY	2 cut(s)	319, 750
XbaI	TCTAGA	1 cut(s)	340
XceI	RCATGY	1 cut(s)	803
XmiI	GTMKAC	2 cut(s)	680, 1057
XmnI	GAANNNNTTC	2 cut(s)	151, 1356
XspI	CTAG	6 cut(s)	59, 114, 341, 597, 635, 1317
ZraI	GACGTC	1 cut(s)	483
ZrmI	AGTACT	1 cut(s)	930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.