Rmu_ssc0000197.1_g000088

Nuclear speckle splicing regulatory protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000197.1
OG0008231
Physical Location & Seq
Forward (+)
377622 .. 378626
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1005 bp
atgcttgtgtattggaacttggatgcagggcctcctactctactgactggactcgccgtacaagaaggaagaagaagaatgagcaagtatgggttgaacctaaggccacagcagaagaagcagccccctaggcctcctcttcgtaaacctgttggttttggcgatgatgatgacaatgacgttgagagggaaatttctcgacatgctaccaagaacaagtcactcagggatattgaggagcagcagaggaaagcgctggagcaagacccatcagtgttcgactatgatggagtttatgatgatatgaaacagaaagcgatacaacctcgggcacaagatcaccaagagagaaagtcaagatatattcagcagttaatgaaaaaagcagaagaacgaaatcgagagcatgagatagcatttgaaagaaagcttgcaaaagagcgaagtcaagaagatcacctgtatgcagacaaggataaatttgtcacaaaggcttacaaaaagaaacttgcagagcaggcaaaatggatggaggaagaccgacttcgtcagcttcgggaggagaaagacgatgttactaagaagacagatttgagtgaattttacttcaaccttgaaaaaaatgttgcgtttggtgcggaagatgccaagttaaggaaagagaagcaggctgaagtaagcgagccagagaaacagttcgaattaaagaagctggcaaaacttgacgagggagaaatagctggagcaccaatgccattggagtctccaagggtgagggaggggggtgaaggtgaaaatacaactatgtctgagactgttgaaccgtctgatgagaagccagcttcaaacacatcagctcaggaaaaattgtcagctgaacagccgccagcagatcaaccaaaggttaatcatcacaaaagaggtgaagatgcggtggctgcagcaaaggagcggtttctagctcgaaagagggcaaaagaacaacaaaagtactatgaaaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2040

Protein Analysis

334

Amino Acids

38.84

Weight (kDa)

7.06

Isoelectric Point (pI)

60.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NSRP1_N PF09745 79 - 195 1.3e-37 Nuclear speckle splicing regulatory protein 1, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 952
AciI CCGC 4 cut(s) 638, 884, 932, 952
AcsI RAATTY 3 cut(s) 192, 479, 599
AcuI CTGAAG 1 cut(s) 693
AfaI GTAC 2 cut(s) 60, 992
AfeI AGCGCT 1 cut(s) 255
AfiI CCNNNNNNNGG 1 cut(s) 654
AgsI TTSAA 6 cut(s) 97, 422, 610, 617, 821, 846
AluBI AGCT 8 cut(s) 430, 553, 712, 740, 842, 857, 875, 962
AluI AGCT 8 cut(s) 430, 553, 712, 740, 842, 857, 875, 962
Alw21I GWGCWC 1 cut(s) 748
Alw26I GTCTC 2 cut(s) 768, 806
Ama87I CYCGRG 1 cut(s) 327
Aor51HI AGCGCT 1 cut(s) 255
AoxI GGCC 3 cut(s) 29, 104, 131
ApeKI GCWGC 4 cut(s) 121, 241, 938, 941
ApoI RAATTY 3 cut(s) 192, 479, 599
Asp700I GAANNNNTTC 1 cut(s) 695
AspA2I CCTAGG 1 cut(s) 128
AspLEI GCGC 1 cut(s) 256
AspS9I GGNCC 1 cut(s) 29
AsuHPI GGTGA 6 cut(s) 332, 449, 784, 797, 803, 935
AsuII TTCGAA 1 cut(s) 699
AvaI CYCGRG 1 cut(s) 327
AvrII CCTAGG 1 cut(s) 128
AxyI CCTNAGG 1 cut(s) 101
BaeGI GKGCMC 1 cut(s) 334
BbsI GAAGAC 2 cut(s) 543, 590
Bbv12I GWGCWC 1 cut(s) 748
BbvI GCAGC 4 cut(s) 133, 253, 925, 953
BccI CCATC 3 cut(s) 277, 281, 523
BceAI ACGGC 1 cut(s) 41
BcoDI GTCTC 2 cut(s) 768, 806
BfaI CTAG 2 cut(s) 129, 959
BfmI CTRYAG 1 cut(s) 939
BfoI RGCGCY 1 cut(s) 257
BglI GCCNNNNNGGC 1 cut(s) 130
BisI GCNGC 5 cut(s) 122, 242, 884, 939, 942
BlnI CCTAGG 1 cut(s) 128
BlsI GCNGC 5 cut(s) 123, 243, 885, 940, 943
BmcAI AGTACT 1 cut(s) 992
BmeT110I CYCGRG 1 cut(s) 327
BmgT120I GGNCC 1 cut(s) 29
BmsI GCATC 3 cut(s) 13, 634, 919
BpiI GAAGAC 2 cut(s) 543, 590
BpmI CTGGAG 2 cut(s) 278, 762
Bpu10I CCTNAGC 1 cut(s) 858
Bpu14I TTCGAA 1 cut(s) 699
BsaJI CCNNGG 3 cut(s) 128, 326, 767
Bsc4I CCNNNNNNNGG 1 cut(s) 654
Bse1I ACTGG 1 cut(s) 52
Bse21I CCTNAGG 1 cut(s) 101
BseDI CCNNGG 3 cut(s) 128, 326, 767
BseGI GGATG 2 cut(s) 28, 534
BseLI CCNNNNNNNGG 1 cut(s) 654
BseMII CTCAG 3 cut(s) 238, 801, 872
BseNI ACTGG 1 cut(s) 52
BseRI GAGGAG 3 cut(s) 126, 251, 575
BseSI GKGCMC 1 cut(s) 334
BseXI GCAGC 4 cut(s) 133, 253, 925, 953
BshFI GGCC 3 cut(s) 31, 106, 133
BsiHKAI GWGCWC 1 cut(s) 748
BsiHKCI CYCGRG 1 cut(s) 327
BslI CCNNNNNNNGG 1 cut(s) 654
BsmAI GTCTC 2 cut(s) 768, 806
BsnI GGCC 3 cut(s) 31, 106, 133
BsoBI CYCGRG 1 cut(s) 327
Bsp119I TTCGAA 1 cut(s) 699
Bsp1286I GDGCHC 2 cut(s) 334, 748
Bsp143I GATC 3 cut(s) 337, 454, 892
BspACI CCGC 4 cut(s) 638, 884, 932, 952
BspANI GGCC 3 cut(s) 31, 106, 133
BspCNI CTCAG 3 cut(s) 237, 802, 871
BspMAI CTGCAG 1 cut(s) 943
BspT104I TTCGAA 1 cut(s) 699
BsrBI CCGCTC 1 cut(s) 952
BsrI ACTGG 1 cut(s) 52
BssECI CCNNGG 3 cut(s) 128, 326, 767
BssMI GATC 3 cut(s) 337, 454, 892
BssT1I CCWWGG 2 cut(s) 128, 767
Bst4CI ACNGT 3 cut(s) 696, 817, 825
Bst6I CTCTTC 1 cut(s) 144
BstBI TTCGAA 1 cut(s) 699
BstC8I GCNNGC 7 cut(s) 432, 519, 669, 683, 714, 840, 888
BstDEI CTNAG 5 cut(s) 101, 224, 579, 810, 858
BstF5I GGATG 2 cut(s) 28, 534
BstH2I RGCGCY 1 cut(s) 257
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 3 cut(s) 340, 457, 895
BstMAI GTCTC 2 cut(s) 768, 806
BstMBI GATC 3 cut(s) 337, 454, 892
BstMWI GCNNNNNNNGC 6 cut(s) 118, 130, 518, 635, 644, 938
BstNSI RCATGY 1 cut(s) 206
BstSFI CTRYAG 1 cut(s) 939
BstSLI GKGCMC 1 cut(s) 334
BstV1I GCAGC 4 cut(s) 133, 253, 925, 953
BstV2I GAAGAC 2 cut(s) 543, 590
Bsu36I CCTNAGG 1 cut(s) 101
BsuRI GGCC 3 cut(s) 31, 106, 133
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 2 cut(s) 28, 534
BtsIMutI CAGTG 1 cut(s) 279
Cac8I GCNNGC 7 cut(s) 432, 519, 669, 683, 714, 840, 888
CfoI GCGC 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 29
Csp6I GTAC 2 cut(s) 59, 991
CviAII CATG 2 cut(s) 203, 407
CviQI GTAC 2 cut(s) 59, 991
DdeI CTNAG 5 cut(s) 101, 224, 579, 810, 858
DpnI GATC 3 cut(s) 339, 456, 894
DpnII GATC 3 cut(s) 337, 454, 892
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco130I CCWWGG 2 cut(s) 128, 767
Eco147I AGGCCT 1 cut(s) 133
Eco47III AGCGCT 1 cut(s) 255
Eco57I CTGAAG 1 cut(s) 693
Eco81I CCTNAGG 1 cut(s) 101
Eco88I CYCGRG 1 cut(s) 327
EcoO109I RGGNCCY 1 cut(s) 29
EcoT14I CCWWGG 2 cut(s) 128, 767
ErhI CCWWGG 2 cut(s) 128, 767
FaeI CATG 2 cut(s) 206, 410
FalI AAGNNNNNCTT 2 cut(s) 528, 560
FatI CATG 2 cut(s) 202, 406
Fnu4HI GCNGC 5 cut(s) 122, 242, 884, 939, 942
FokI GGATG 2 cut(s) 35, 541
Fsp4HI GCNGC 5 cut(s) 122, 242, 884, 939, 942
FspBI CTAG 2 cut(s) 129, 959
GlaI GCGC 1 cut(s) 255
GluI GCNGC 5 cut(s) 122, 242, 884, 939, 942
GsuI CTGGAG 2 cut(s) 278, 762
HaeII RGCGCY 1 cut(s) 257
HaeIII GGCC 3 cut(s) 31, 106, 133
HhaI GCGC 1 cut(s) 256
Hin1II CATG 2 cut(s) 206, 410
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 2 cut(s) 51, 761
HphI GGTGA 6 cut(s) 332, 449, 784, 797, 803, 935
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 2 cut(s) 811, 829
Hpy188III TCNNGA 6 cut(s) 198, 357, 401, 449, 557, 860
Hpy8I GTNNAC 1 cut(s) 146
HpyAV CCTTC 2 cut(s) 59, 782
HpyCH4III ACNGT 3 cut(s) 696, 817, 825
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 5 cut(s) 26, 434, 467, 512, 941
HpyF10VI GCNNNNNNNGC 6 cut(s) 118, 130, 518, 635, 644, 938
HpyF3I CTNAG 5 cut(s) 101, 224, 579, 810, 858
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 2 cut(s) 206, 410
HspAI GCGC 1 cut(s) 254
Kzo9I GATC 3 cut(s) 337, 454, 892
LmnI GCTCC 4 cut(s) 238, 259, 743, 949
Lsp1109I GCAGC 4 cut(s) 133, 253, 925, 953
LweI GCATC 3 cut(s) 13, 634, 919
MaeI CTAG 2 cut(s) 129, 959
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 3 cut(s) 219, 484, 574
MalI GATC 3 cut(s) 339, 456, 894
MbiI CCGCTC 1 cut(s) 952
MboI GATC 3 cut(s) 337, 454, 892
MhlI GDGCHC 2 cut(s) 334, 748
MluCI AATT 5 cut(s) 192, 479, 599, 701, 866
MlyI GAGTC 2 cut(s) 45, 770
MroXI GAANNNNTTC 1 cut(s) 695
MseI TTAA 4 cut(s) 374, 653, 704, 906
MslI CAYNNNNRTG 1 cut(s) 462
MspA1I CMGCKG 1 cut(s) 875
MwoI GCNNNNNNNGC 6 cut(s) 118, 130, 518, 635, 644, 938
NdeII GATC 3 cut(s) 337, 454, 892
NlaIII CATG 2 cut(s) 206, 410
NmuCI GTSAC 2 cut(s) 219, 484
NspI RCATGY 1 cut(s) 206
NspV TTCGAA 1 cut(s) 699
PceI AGGCCT 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 695
PflFI GACNNNGTC 1 cut(s) 546
PkrI GCNGC 5 cut(s) 123, 243, 885, 940, 943
PleI GAGTC 2 cut(s) 45, 769
PpsI GAGTC 2 cut(s) 45, 769
PspPI GGNCC 1 cut(s) 29
PstI CTGCAG 1 cut(s) 943
PsyI GACNNNGTC 1 cut(s) 546
PvuII CAGCTG 1 cut(s) 875
RsaI GTAC 2 cut(s) 60, 992
RsaNI GTAC 2 cut(s) 59, 991
RseI CAYNNNNRTG 1 cut(s) 462
SaqAI TTAA 4 cut(s) 374, 653, 704, 906
SatI GCNGC 5 cut(s) 122, 242, 884, 939, 942
Sau3AI GATC 3 cut(s) 337, 454, 892
Sau96I GGNCC 1 cut(s) 29
ScaI AGTACT 1 cut(s) 992
SchI GAGTC 2 cut(s) 45, 770
SduI GDGCHC 2 cut(s) 334, 748
SfaNI GCATC 3 cut(s) 13, 634, 919
SfcI CTRYAG 1 cut(s) 939
SfuI TTCGAA 1 cut(s) 699
SmiMI CAYNNNNRTG 1 cut(s) 462
Sse9I AATT 5 cut(s) 192, 479, 599, 701, 866
SseBI AGGCCT 1 cut(s) 133
SsiI CCGC 4 cut(s) 638, 884, 932, 952
SspMI CTAG 2 cut(s) 129, 959
StuI AGGCCT 1 cut(s) 133
StyI CCWWGG 2 cut(s) 128, 767
TaaI ACNGT 3 cut(s) 696, 817, 825
TaiI ACGT 1 cut(s) 183
TaqI TCGA 5 cut(s) 199, 279, 400, 699, 964
TaqII GACCGA 1 cut(s) 555
TasI AATT 5 cut(s) 192, 479, 599, 701, 866
TatI WGTACW 1 cut(s) 990
TauI GCSGC 1 cut(s) 886
Tru1I TTAA 4 cut(s) 374, 653, 704, 906
Tru9I TTAA 4 cut(s) 374, 653, 704, 906
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 2 cut(s) 219, 484
TseI GCWGC 4 cut(s) 121, 241, 938, 941
Tsp45I GTSAC 2 cut(s) 219, 484
TspDTI ATGAA 2 cut(s) 320, 392
TspRI CASTG 1 cut(s) 279
Tth111I GACNNNGTC 1 cut(s) 546
XapI RAATTY 3 cut(s) 192, 479, 599
XceI RCATGY 1 cut(s) 206
XmaJI CCTAGG 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 695
XspI CTAG 2 cut(s) 129, 959
ZrmI AGTACT 1 cut(s) 992
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.