Rmu_ssc0000432.1_g000044

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000432.1
OG0015558
Physical Location & Seq
Reverse (-)
157930 .. 158693
764 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 585 bp
atggagaagcagattctacagaggctgagatgctcggtccagaattacgactggggtaagaaaggcggagactctgaggtgggcaggctctatgcctacaactctggttctgaaattgacccagaaaagccttacgcagagttttggatgggaacccatgactctggaccatcctttttgattgataaggatctgaatattaacacgaggaatgaatcgtttttgcttctcaaagactgggtttctgataagtctcatgacgtgctgggtcacaaggtcgtcgagaagtggggctctgacctacctttcttatttaaggtgctttcggtggcaaagggtttgtcaatccaggcacatccagatcaggacttggccaaggctttgcacaagctgatgccaaacatttacaaggacgacaatcacaagcctgagatggcgcttgctctaacacattttcaggctctttgtggttttattactgttgaggtatccatcctgcttgtccctgatgtttctttctctaatcatctcgatctcaatagtcatcttgccatatatcatgatgttccagcgccttattcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

194

Amino Acids

21.93

Weight (kDa)

5.75

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMI_typeI_cat PF20511 6 - 158 1.9e-48 Phosphomannose isomerase type I, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 66
AclWI GGATC 1 cut(s) 198
AcoI YGGCCR 1 cut(s) 372
AjiI CACGTC 1 cut(s) 262
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 1 cut(s) 391
AluI AGCT 1 cut(s) 391
Alw26I GTCTC 2 cut(s) 63, 258
AlwI GGATC 1 cut(s) 198
AlwNI CAGNNNCTG 1 cut(s) 25
AoxI GGCC 1 cut(s) 372
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AspLEI GCGC 2 cut(s) 439, 574
AspS9I GGNCC 2 cut(s) 37, 167
AvaII GGWCC 2 cut(s) 37, 167
BalI TGGCCA 1 cut(s) 374
BanII GRGCYC 1 cut(s) 296
BauI CACGAG 1 cut(s) 205
BccI CCATC 4 cut(s) 142, 178, 427, 500
BciT130I CCWGG 1 cut(s) 350
BciVI GTATCC 1 cut(s) 499
BcoDI GTCTC 2 cut(s) 63, 258
BfmI CTRYAG 1 cut(s) 17
BfoI RGCGCY 2 cut(s) 440, 575
BfuI GTATCC 1 cut(s) 499
Bme1390I CCNGG 1 cut(s) 350
Bme18I GGWCC 2 cut(s) 37, 167
BmgBI CACGTC 1 cut(s) 262
BmgT120I GGNCC 2 cut(s) 37, 167
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 350
BmrI ACTGGG 2 cut(s) 61, 247
BmsI GCATC 2 cut(s) 20, 384
BmuI ACTGGG 2 cut(s) 61, 247
BsaBI GATNNNNATC 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 375
Bse1I ACTGG 2 cut(s) 56, 242
Bse8I GATNNNNATC 1 cut(s) 189
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 1 cut(s) 375
BseGI GGATG 4 cut(s) 153, 170, 355, 492
BseJI GATNNNNATC 1 cut(s) 189
BseMII CTCAG 3 cut(s) 17, 66, 420
BseNI ACTGG 2 cut(s) 56, 242
BseYI CCCAGC 1 cut(s) 265
BshFI GGCC 1 cut(s) 374
BslFI GGGAC 1 cut(s) 488
BsmAI GTCTC 2 cut(s) 63, 258
BsmFI GGGAC 1 cut(s) 488
BsnI GGCC 1 cut(s) 374
Bsp1286I GDGCHC 1 cut(s) 296
Bsp143I GATC 3 cut(s) 190, 361, 532
BspACI CCGC 1 cut(s) 66
BspANI GGCC 1 cut(s) 374
BspCNI CTCAG 3 cut(s) 18, 67, 421
BspHI TCATGA 2 cut(s) 256, 559
BspLI GGNNCC 1 cut(s) 154
BspPI GGATC 1 cut(s) 198
BsrI ACTGG 2 cut(s) 56, 242
BssECI CCNNGG 1 cut(s) 375
BssMI GATC 3 cut(s) 190, 361, 532
BssSI CACGAG 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 375
Bst2BI CACGAG 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 1 cut(s) 481
BstC8I GCNNGC 2 cut(s) 86, 441
BstDEI CTNAG 3 cut(s) 26, 75, 429
BstF5I GGATG 4 cut(s) 153, 170, 355, 492
BstH2I RGCGCY 2 cut(s) 440, 575
BstHHI GCGC 2 cut(s) 439, 574
BstKTI GATC 3 cut(s) 193, 364, 535
BstMAI GTCTC 2 cut(s) 63, 258
BstMBI GATC 3 cut(s) 190, 361, 532
BstNI CCWGG 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 348
BstSFI CTRYAG 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 190
BstXI CCANNNNNNTGG 1 cut(s) 164
BstYI RGATCY 1 cut(s) 190
BsuI GTATCC 1 cut(s) 499
BsuRI GGCC 1 cut(s) 374
BtrI CACGTC 1 cut(s) 262
BtsCI GGATG 4 cut(s) 153, 170, 355, 492
Cac8I GCNNGC 2 cut(s) 86, 441
CaiI CAGNNNCTG 1 cut(s) 25
CciI TCATGA 2 cut(s) 256, 559
CfoI GCGC 2 cut(s) 439, 574
Cfr13I GGNCC 2 cut(s) 37, 167
CviAII CATG 3 cut(s) 158, 257, 560
CviJI RGCY 9 cut(s) 25, 88, 130, 294, 374, 380, 391, 427, 461
CviKI_1 RGCY 9 cut(s) 25, 88, 130, 294, 374, 380, 391, 427, 461
DdeI CTNAG 3 cut(s) 26, 75, 429
DpnI GATC 3 cut(s) 192, 363, 534
DpnII GATC 3 cut(s) 190, 361, 532
EaeI YGGCCR 1 cut(s) 372
EciI GGCGGA 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 296
Eco47I GGWCC 2 cut(s) 37, 167
EcoRII CCWGG 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 375
EcoT38I GRGCYC 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 375
FaeI CATG 3 cut(s) 161, 260, 563
FaiI YATR 6 cut(s) 93, 159, 258, 554, 556, 561
FaqI GGGAC 1 cut(s) 488
FatI CATG 3 cut(s) 157, 256, 559
FokI GGATG 4 cut(s) 157, 160, 342, 479
FriOI GRGCYC 1 cut(s) 296
GlaI GCGC 2 cut(s) 438, 573
GsaI CCCAGC 1 cut(s) 269
HaeII RGCGCY 2 cut(s) 440, 575
HaeIII GGCC 1 cut(s) 374
HhaI GCGC 2 cut(s) 439, 574
Hin1II CATG 3 cut(s) 161, 260, 563
Hin6I GCGC 2 cut(s) 437, 572
HinP1I GCGC 2 cut(s) 437, 572
HinfI GANTC 4 cut(s) 13, 71, 161, 215
Hpy188I TCNGA 5 cut(s) 76, 112, 195, 247, 298
Hpy188III TCNNGA 8 cut(s) 40, 165, 257, 283, 359, 365, 530, 560
Hpy99I CGWCG 1 cut(s) 284
HpyCH4III ACNGT 1 cut(s) 481
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 1 cut(s) 385
HpyF3I CTNAG 3 cut(s) 26, 75, 429
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 3 cut(s) 161, 260, 563
HspAI GCGC 2 cut(s) 437, 572
Kzo9I GATC 3 cut(s) 190, 361, 532
LweI GCATC 2 cut(s) 20, 384
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 269
MalI GATC 3 cut(s) 192, 363, 534
MboI GATC 3 cut(s) 190, 361, 532
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 296
MlsI TGGCCA 1 cut(s) 374
MluCI AATT 2 cut(s) 43, 114
MluNI TGGCCA 1 cut(s) 374
MlyI GAGTC 2 cut(s) 65, 155
MnlI CCTC 4 cut(s) 15, 70, 201, 478
Mox20I TGGCCA 1 cut(s) 374
MscI TGGCCA 1 cut(s) 374
MseI TTAA 3 cut(s) 201, 315, 583
Msp20I TGGCCA 1 cut(s) 374
MspR9I CCNGG 1 cut(s) 350
MvaI CCWGG 1 cut(s) 350
NdeII GATC 3 cut(s) 190, 361, 532
NlaIII CATG 3 cut(s) 161, 260, 563
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 269
PagI TCATGA 2 cut(s) 256, 559
PfeI GAWTC 2 cut(s) 13, 215
PleI GAGTC 2 cut(s) 65, 155
PpsI GAGTC 2 cut(s) 65, 155
Psp6I CCWGG 1 cut(s) 348
PspFI CCCAGC 1 cut(s) 265
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 2 cut(s) 37, 167
PstNI CAGNNNCTG 1 cut(s) 25
PsuI RGATCY 1 cut(s) 190
SaqAI TTAA 3 cut(s) 201, 315, 583
Sau3AI GATC 3 cut(s) 190, 361, 532
Sau96I GGNCC 2 cut(s) 37, 167
SchI GAGTC 2 cut(s) 65, 155
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 1 cut(s) 296
SetI ASST 8 cut(s) 81, 264, 279, 303, 307, 321, 393, 489
SfaNI GCATC 2 cut(s) 20, 384
SfcI CTRYAG 1 cut(s) 17
SinI GGWCC 2 cut(s) 37, 167
Sse9I AATT 2 cut(s) 43, 114
SsiI CCGC 1 cut(s) 66
SspI AATATT 1 cut(s) 199
StyD4I CCNGG 1 cut(s) 348
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 1 cut(s) 481
TaiI ACGT 1 cut(s) 264
TaqI TCGA 2 cut(s) 282, 531
TaqII GACCGA 1 cut(s) 25
TasI AATT 2 cut(s) 43, 114
TfiI GAWTC 2 cut(s) 13, 215
Tru1I TTAA 3 cut(s) 201, 315, 583
Tru9I TTAA 3 cut(s) 201, 315, 583
TseFI GTSAC 1 cut(s) 269
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 1 cut(s) 228
VpaK11BI GGWCC 2 cut(s) 37, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.