Rroxscaffold_3G00221700

7-dehydrocholesterol reductase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
4451540 .. 4455363
3824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00221700.1

Sequence Viewer

Length: 192 bp
ATGGTATATAACGGTACATGCTGTTGGCTCTCTTTTCCAATATATCTGGCTGGGAATAGGCCTGTCTACAAGGCAAATGGTATAGCAGCATACTTTGTCACATTGATAGATCACTTGCTTGACAGTTTCTTCTGGAGATCAGACATATATAAGTCATCCATGGAGAAGAGGAAATTGCAGTATCATGCCTAG

Protein Analysis

63

Amino Acids

7.41

Weight (kDa)

9.03

Isoelectric Point (pI)

35.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 66
AfaI GTAC 1 cut(s) 16
AoxI GGCC 1 cut(s) 59
ApeKI GCWGC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 98
BfaI CTAG 1 cut(s) 190
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BpmI CTGGAG 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 98
BseYI CCCAGC 1 cut(s) 50
BshFI GGCC 1 cut(s) 61
BsnI GGCC 1 cut(s) 61
Bsp143I GATC 2 cut(s) 109, 137
Bsp19I CCATGG 1 cut(s) 159
BspANI GGCC 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 2 cut(s) 109, 137
BssT1I CCWWGG 1 cut(s) 159
Bst4CI ACNGT 2 cut(s) 14, 125
Bst6I CTCTTC 1 cut(s) 161
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 155
BstKTI GATC 2 cut(s) 112, 140
BstMBI GATC 2 cut(s) 109, 137
BstNSI RCATGY 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 98
BsuRI GGCC 1 cut(s) 61
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 155
Csp6I GTAC 1 cut(s) 15
CviAII CATG 3 cut(s) 18, 160, 185
CviJI RGCY 3 cut(s) 28, 50, 61
CviKI_1 RGCY 3 cut(s) 28, 50, 61
CviQI GTAC 1 cut(s) 15
DpnI GATC 2 cut(s) 111, 139
DpnII GATC 2 cut(s) 109, 137
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 159
Eco147I AGGCCT 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 3 cut(s) 21, 163, 188
FatI CATG 3 cut(s) 17, 159, 184
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 1 cut(s) 142
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 1 cut(s) 190
GluI GCNGC 1 cut(s) 87
GsaI CCCAGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 154
HaeIII GGCC 1 cut(s) 61
Hin1II CATG 3 cut(s) 21, 163, 188
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 1 cut(s) 67
HpyCH4III ACNGT 2 cut(s) 14, 125
HpyCH4V TGCA 1 cut(s) 178
Hsp92II CATG 3 cut(s) 21, 163, 188
Kzo9I GATC 2 cut(s) 109, 137
LpnPI CCDG 4 cut(s) 32, 36, 75, 118
Lsp1109I GCAGC 1 cut(s) 98
MaeI CTAG 1 cut(s) 190
MaeIII GTNAC 1 cut(s) 97
MalI GATC 2 cut(s) 111, 139
MboI GATC 2 cut(s) 109, 137
MboII GAAGA 2 cut(s) 121, 178
MluCI AATT 1 cut(s) 173
MnlI CCTC 1 cut(s) 162
NcoI CCATGG 1 cut(s) 159
NdeII GATC 2 cut(s) 109, 137
NlaIII CATG 3 cut(s) 21, 163, 188
NmuCI GTSAC 1 cut(s) 97
NspI RCATGY 1 cut(s) 21
PceI AGGCCT 1 cut(s) 61
PkrI GCNGC 1 cut(s) 88
PspFI CCCAGC 1 cut(s) 50
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 2 cut(s) 109, 137
SgeI CNNG 9 cut(s) 30, 59, 63, 74, 82, 127, 131, 145, 172
Sse9I AATT 1 cut(s) 173
SseBI AGGCCT 1 cut(s) 61
SspMI CTAG 1 cut(s) 190
StuI AGGCCT 1 cut(s) 61
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 2 cut(s) 14, 125
TasI AATT 1 cut(s) 173
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 97
XceI RCATGY 1 cut(s) 21
XmiI GTMKAC 1 cut(s) 66
XspI CTAG 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.