Rh2CG096700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0005934
Physical Location & Seq
Reverse (-)
8045250 .. 8058854
13605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG096700.1

Sequence Viewer

Length: 525 bp
ATGGGTTGTTCTCAACTTGTCTTTGAAAGTGATTGTTTACAAGCGGTGCAACCAGTTCATTGTCTTGATCTATCAAACTCTTTTGGGATTCTCGGCAAACATATCAAATTCTCATTGCCAACTAATCGATGGCCAAGACTTGAAGAAGTGATGGGTTTTCTTGAACAGTCGTTTCCTGATGTTGAAATAGCGATTGAACTTGGGAAGATGTGTCTTTTTGCAGCAATATTGAAAGAAGCTAGAGGAAACAATGGAGAAATTCTCACAAGGAATAACAATGTTGAGAATTCTATTGATAGCTACCGCGAAGCCTTTGACGTTGTTGACTTGATGGTATATAATGGTACATGTTGTTGGCTCTCTTTTCCAATATATCCGACTAGGAATCTGCCTGTCTACAAGGCAAATGGTATGGCAGCATACTTTGTCACATTGACAGATTACTCGCTTGACAGTTTCTTATGGAGATCAGACATGTATAAGTCATCCATGAAGGAGAAGAGGAAATTGCAGTATCATGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.93

Weight (kDa)

5.62

Isoelectric Point (pI)

52.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 396
AccII CGCG 1 cut(s) 306
AciI CCGC 2 cut(s) 44, 304
AcoI YGGCCR 1 cut(s) 131
AcsI RAATTY 3 cut(s) 107, 258, 286
AfaI GTAC 1 cut(s) 346
AflIII ACRYGT 2 cut(s) 347, 474
AgsI TTSAA 6 cut(s) 26, 143, 164, 185, 197, 232
AluBI AGCT 2 cut(s) 239, 300
AluI AGCT 2 cut(s) 239, 300
AoxI GGCC 1 cut(s) 131
ApeKI GCWGC 2 cut(s) 221, 416
ApoI RAATTY 3 cut(s) 107, 258, 286
BalI TGGCCA 1 cut(s) 133
BbvI GCAGC 2 cut(s) 233, 428
BccI CCATC 3 cut(s) 123, 145, 325
BfaI CTAG 3 cut(s) 240, 381, 523
BisI GCNGC 2 cut(s) 222, 417
BlsI GCNGC 2 cut(s) 223, 418
BplI GAGNNNNNCTC 2 cut(s) 246, 278
Bsa29I ATCGAT 1 cut(s) 127
Bse1I ACTGG 1 cut(s) 53
Bse3DI GCAATG 1 cut(s) 113
BseCI ATCGAT 1 cut(s) 127
BseGI GGATG 1 cut(s) 485
BseMI GCAATG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 53
BseXI GCAGC 2 cut(s) 233, 428
Bsh1236I CGCG 1 cut(s) 306
BshFI GGCC 1 cut(s) 133
BshVI ATCGAT 1 cut(s) 127
BsnI GGCC 1 cut(s) 133
Bsp143I GATC 2 cut(s) 67, 467
BspACI CCGC 2 cut(s) 44, 304
BspANI GGCC 1 cut(s) 133
BspDI ATCGAT 1 cut(s) 127
BspFNI CGCG 1 cut(s) 306
BsrDI GCAATG 1 cut(s) 113
BsrI ACTGG 1 cut(s) 53
BssMI GATC 2 cut(s) 67, 467
Bst4CI ACNGT 2 cut(s) 168, 455
Bst6I CTCTTC 1 cut(s) 494
BstF5I GGATG 1 cut(s) 485
BstFNI CGCG 1 cut(s) 306
BstKTI GATC 2 cut(s) 70, 470
BstMBI GATC 2 cut(s) 67, 467
BstNSI RCATGY 2 cut(s) 351, 478
BstUI CGCG 1 cut(s) 306
BstV1I GCAGC 2 cut(s) 233, 428
Bsu15I ATCGAT 1 cut(s) 127
BsuRI GGCC 1 cut(s) 133
BsuTUI ATCGAT 1 cut(s) 127
BtsCI GGATG 1 cut(s) 485
ClaI ATCGAT 1 cut(s) 127
Csp6I GTAC 1 cut(s) 345
CviAII CATG 4 cut(s) 348, 475, 490, 518
CviJI RGCY 5 cut(s) 133, 239, 300, 311, 358
CviKI_1 RGCY 5 cut(s) 133, 239, 300, 311, 358
CviQI GTAC 1 cut(s) 345
DpnI GATC 2 cut(s) 69, 469
DpnII GATC 2 cut(s) 67, 467
EaeI YGGCCR 1 cut(s) 131
Eam1104I CTCTTC 1 cut(s) 494
EarI CTCTTC 1 cut(s) 494
EcoRI GAATTC 1 cut(s) 286
FaeI CATG 4 cut(s) 351, 478, 493, 521
FatI CATG 4 cut(s) 347, 474, 489, 517
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 2 cut(s) 222, 417
FokI GGATG 1 cut(s) 472
Fsp4HI GCNGC 2 cut(s) 222, 417
FspBI CTAG 3 cut(s) 240, 381, 523
GluI GCNGC 2 cut(s) 222, 417
HaeIII GGCC 1 cut(s) 133
Hin1II CATG 4 cut(s) 351, 478, 493, 521
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 2 cut(s) 88, 385
Hpy166II GTNNAC 3 cut(s) 38, 325, 397
Hpy188I TCNGA 2 cut(s) 378, 472
Hpy188III TCNNGA 3 cut(s) 65, 161, 176
Hpy8I GTNNAC 3 cut(s) 38, 325, 397
HpyAV CCTTC 1 cut(s) 487
HpyCH4III ACNGT 2 cut(s) 168, 455
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 3 cut(s) 49, 221, 511
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 4 cut(s) 351, 478, 493, 521
Kzo9I GATC 2 cut(s) 67, 467
LpnPI CCDG 3 cut(s) 66, 189, 405
Lsp1109I GCAGC 2 cut(s) 233, 428
MaeI CTAG 3 cut(s) 240, 381, 523
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 1 cut(s) 427
MalI GATC 2 cut(s) 69, 469
MboI GATC 2 cut(s) 67, 467
MboII GAAGA 3 cut(s) 155, 217, 511
MlsI TGGCCA 1 cut(s) 133
MluCI AATT 4 cut(s) 107, 258, 286, 506
MluNI TGGCCA 1 cut(s) 133
MmeI TCCRAC 1 cut(s) 401
MnlI CCTC 2 cut(s) 236, 495
Mox20I TGGCCA 1 cut(s) 133
MscI TGGCCA 1 cut(s) 133
Msp20I TGGCCA 1 cut(s) 133
MvnI CGCG 1 cut(s) 306
NdeII GATC 2 cut(s) 67, 467
NlaIII CATG 4 cut(s) 351, 478, 493, 521
NmeAIII GCCGAG 1 cut(s) 72
NmuCI GTSAC 1 cut(s) 427
NspI RCATGY 2 cut(s) 351, 478
PciI ACATGT 2 cut(s) 347, 474
PfeI GAWTC 2 cut(s) 88, 385
PkrI GCNGC 2 cut(s) 223, 418
PscI ACATGT 2 cut(s) 347, 474
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
SatI GCNGC 2 cut(s) 222, 417
Sau3AI GATC 2 cut(s) 67, 467
SetI ASST 3 cut(s) 241, 302, 321
Sse9I AATT 4 cut(s) 107, 258, 286, 506
SsiI CCGC 2 cut(s) 44, 304
SspI AATATT 1 cut(s) 228
SspMI CTAG 3 cut(s) 240, 381, 523
TaaI ACNGT 2 cut(s) 168, 455
TaiI ACGT 1 cut(s) 321
TaqI TCGA 1 cut(s) 127
TasI AATT 4 cut(s) 107, 258, 286, 506
TfiI GAWTC 2 cut(s) 88, 385
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 2 cut(s) 221, 416
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 2 cut(s) 47, 506
XapI RAATTY 3 cut(s) 107, 258, 286
XceI RCATGY 2 cut(s) 351, 478
XcmI CCANNNNNNNNNTGG 1 cut(s) 126
XmiI GTMKAC 1 cut(s) 396
XspI CTAG 3 cut(s) 240, 381, 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.