Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005934

Physical Location & Seq

Genomic Coordinates Forward (+)

18914534 .. 18922237

Gene Structure 7704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG203700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGCTCAGAGATGTAAGGGCAAGAAGACGAACAGATCTGGGCATGGCTTAGAGAGATGTGAGAGACTGAGAGCAGAAGAAGATGAACATGTCGCAGGAGTTGGAATCCCTGGGATAAGAATTGAAATGAAAAGAAGAATCGGGCAAGGCGGCCTCTGCAGCAGAGGCCGAGAAGAGGAGGATGGGGATGGTGGAGTAGAGGCCAAGAGGCCAATACGATTAAACAAGAGTGTCTTGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

80

Amino Acids

8.84

Weight (kDa)

9.56

Isoelectric Point (pI)

57.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005934)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0358351 RchiOBHm_Chr1g0375481 RchiOBHm_Chr3g0482501 RchiOBHm_Chr4g0390221
rosa_roxburghii	Rroxscaffold_1G00020020 Rroxscaffold_1G00050680 Rroxscaffold_2G00094370 Rroxscaffold_2G00146170 Rroxscaffold_3G00221700
rosa_rugosa	Rorug07G0192600
rosa_samantha	Rh1AG168300 Rh1AG275000 Rh1AG401900 Rh2BG094900 Rh2CG096700 Rh2CG359400 Rh2DG203700 Rh2DG226600 Rh2DG560000 Rh3AG248100 Rh4AG347000 Rh4BG103700 Rh6BG341800 Rh6DG087800 Rh7BG302200 Rh7BG324800 Rh7CG214600
rosa_wichuraiana	Rw1G035680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	175
AflIII	ACRYGT	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	125
AjnI	CCWGG	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	58
AoxI	GGCC	4 cut(s)	151, 166, 201, 209
ApeKI	GCWGC	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	171
BccI	CCATC	2 cut(s)	176, 182
BciT130I	CCWGG	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	58
BfmI	CTRYAG	1 cut(s)	157
BglII	AGATCT	1 cut(s)	35
BisI	GCNGC	2 cut(s)	151, 160
BlsI	GCNGC	2 cut(s)	152, 161
Bme1390I	CCNGG	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	109, 110
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	2 cut(s)	109, 110
BseGI	GGATG	2 cut(s)	187, 193
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMII	CTCAG	2 cut(s)	20, 59
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	171
BshFI	GGCC	4 cut(s)	153, 168, 203, 211
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	58
BsnI	GGCC	4 cut(s)	153, 168, 203, 211
Bsp143I	GATC	1 cut(s)	35
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	4 cut(s)	153, 168, 203, 211
BspCNI	CTCAG	2 cut(s)	19, 60
BspMAI	CTGCAG	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	109, 110
BssMI	GATC	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	111
Bst6I	CTCTTC	1 cut(s)	168
BstDEI	CTNAG	3 cut(s)	6, 49, 68
BstF5I	GGATG	2 cut(s)	187, 193
BstKTI	GATC	1 cut(s)	38
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	35
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 159, 165
BstNI	CCWGG	1 cut(s)	111
BstNSI	RCATGY	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	109
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	171
BstV2I	GAAGAC	1 cut(s)	32
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
BsuRI	GGCC	4 cut(s)	153, 168, 203, 211
BtsCI	GGATG	2 cut(s)	187, 193
CviAII	CATG	2 cut(s)	44, 89
CviJI	RGCY	6 cut(s)	5, 48, 153, 168, 203, 211
CviKI_1	RGCY	6 cut(s)	5, 48, 153, 168, 203, 211
DdeI	CTNAG	3 cut(s)	6, 49, 68
DpnI	GATC	1 cut(s)	37
DpnII	GATC	1 cut(s)	35
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	109
FaeI	CATG	2 cut(s)	47, 92
FaiI	YATR	3 cut(s)	45, 90, 241
FalI	AAGNNNNNCTT	1 cut(s)	218
FatI	CATG	2 cut(s)	43, 88
Fnu4HI	GCNGC	2 cut(s)	151, 160
FokI	GGATG	2 cut(s)	194, 200
Fsp4HI	GCNGC	2 cut(s)	151, 160
GluI	GCNGC	2 cut(s)	151, 160
HaeIII	GGCC	4 cut(s)	153, 168, 203, 211
Hin1II	CATG	2 cut(s)	47, 92
HinfI	GANTC	2 cut(s)	105, 138
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	1 cut(s)	235
HpyCH4V	TGCA	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 159, 165
HpyF3I	CTNAG	3 cut(s)	6, 49, 68
Hsp92II	CATG	2 cut(s)	47, 92
Kzo9I	GATC	1 cut(s)	35
LpnPI	CCDG	4 cut(s)	24, 81, 96, 123
Lsp1109I	GCAGC	1 cut(s)	171
MalI	GATC	1 cut(s)	37
MboI	GATC	1 cut(s)	35
MboII	GAAGA	5 cut(s)	37, 89, 92, 147, 185
MflI	RGATCY	1 cut(s)	35
MluCI	AATT	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	6 cut(s)	158, 164, 169, 172, 193, 201
MseI	TTAA	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	156, 159, 165
NdeII	GATC	1 cut(s)	35
NlaIII	CATG	2 cut(s)	47, 92
NmeAIII	GCCGAG	1 cut(s)	194
NspI	RCATGY	1 cut(s)	92
PasI	CCCWGGG	1 cut(s)	110
PciI	ACATGT	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	105, 138
PkrI	GCNGC	2 cut(s)	152, 161
PscI	ACATGT	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PstI	CTGCAG	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	2 cut(s)	151, 160
Sau3AI	GATC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	111
SfcI	CTRYAG	1 cut(s)	157
Sse9I	AATT	1 cut(s)	120
SsiI	CCGC	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	109
TasI	AATT	1 cut(s)	120
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	2 cut(s)	105, 138
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TseI	GCWGC	1 cut(s)	159
TspDTI	ATGAA	2 cut(s)	99, 143
XceI	RCATGY	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.