Rh4BG103700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0005934
Physical Location & Seq
Forward (+)
17865176 .. 17866310
1135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG103700.1

Sequence Viewer

Length: 279 bp
ATGGCGATTCTGGCTTTATTCCACAGCGTTCAGTCTGGGTTGGAGTCTGAGTCGTTGATGAGCACGAGATTTGAAAGATATTGTTCTCAGCGTAGGTTCTTCACCTTTCTGAAGCAGAGAAGCAATCAAACTGGGTCGACTGGCTGCAAATGTCCTTTCCAGCCTTCCAGGTTTACTCCTTCATCCTTCAAGTCGCGCATATGGCTATTCCCTCCGAACAGCAACTGCCACCTCTTCCTCCGGAGGCTGCGGCCACATGCCCTCAGCACCAAGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.72

Weight (kDa)

10.86

Isoelectric Point (pI)

78.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 137
AccII CGCG 1 cut(s) 196
AccIII TCCGGA 1 cut(s) 240
AciI CCGC 1 cut(s) 250
AcoI YGGCCR 1 cut(s) 251
AcuI CTGAAG 1 cut(s) 131
AdeI CACNNNGTG 1 cut(s) 273
AgsI TTSAA 2 cut(s) 74, 190
AjnI CCWGG 1 cut(s) 167
Alw21I GWGCWC 1 cut(s) 65
AlwNI CAGNNNCTG 1 cut(s) 225
Aor13HI TCCGGA 1 cut(s) 240
AoxI GGCC 1 cut(s) 251
ApeKI GCWGC 2 cut(s) 144, 247
AspLEI GCGC 1 cut(s) 198
AsuHPI GGTGA 1 cut(s) 94
BauI CACGAG 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 65
BbvCI CCTCAGC 1 cut(s) 263
BbvI GCAGC 2 cut(s) 131, 234
BciT130I CCWGG 1 cut(s) 169
BisI GCNGC 3 cut(s) 145, 248, 251
BlsI GCNGC 3 cut(s) 146, 249, 252
Bme1390I CCNGG 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 169
BmrI ACTGGG 1 cut(s) 141
BmuI ACTGGG 1 cut(s) 141
Bpu10I CCTNAGC 1 cut(s) 263
BsaWI WCCGGW 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bse1I ACTGG 2 cut(s) 136, 145
BseAI TCCGGA 1 cut(s) 240
BseBI CCWGG 1 cut(s) 169
BseGI GGATG 1 cut(s) 182
BseMII CTCAG 3 cut(s) 39, 101, 277
BseNI ACTGG 2 cut(s) 136, 145
BseXI GCAGC 2 cut(s) 131, 234
Bsh1236I CGCG 1 cut(s) 196
BshFI GGCC 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 241
BsnI GGCC 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 65
Bsp13I TCCGGA 1 cut(s) 240
BspACI CCGC 1 cut(s) 250
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 3 cut(s) 40, 100, 276
BspEI TCCGGA 1 cut(s) 240
BspFNI CGCG 1 cut(s) 196
BsrI ACTGG 2 cut(s) 136, 145
BssSI CACGAG 1 cut(s) 64
Bst2BI CACGAG 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 239
BstDEI CTNAG 3 cut(s) 48, 87, 263
BstF5I GGATG 1 cut(s) 182
BstFNI CGCG 1 cut(s) 196
BstHHI GCGC 1 cut(s) 198
BstMWI GCNNNNNNNGC 2 cut(s) 11, 202
BstNI CCWGG 1 cut(s) 169
BstNSI RCATGY 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 167
BstUI CGCG 1 cut(s) 196
BstV1I GCAGC 2 cut(s) 131, 234
BsuRI GGCC 1 cut(s) 253
BtsCI GGATG 1 cut(s) 182
CaiI CAGNNNCTG 1 cut(s) 225
CfoI GCGC 1 cut(s) 198
CviAII CATG 1 cut(s) 257
CviJI RGCY 6 cut(s) 14, 144, 163, 205, 247, 253
CviKI_1 RGCY 6 cut(s) 14, 144, 163, 205, 247, 253
DdeI CTNAG 3 cut(s) 48, 87, 263
DraIII CACNNNGTG 1 cut(s) 273
EaeI YGGCCR 1 cut(s) 251
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco57I CTGAAG 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 167
FaeI CATG 1 cut(s) 260
FaiI YATR 3 cut(s) 200, 202, 258
FatI CATG 1 cut(s) 256
FauNDI CATATG 1 cut(s) 200
FblI GTMKAC 1 cut(s) 137
Fnu4HI GCNGC 3 cut(s) 145, 248, 251
FokI GGATG 1 cut(s) 169
Fsp4HI GCNGC 3 cut(s) 145, 248, 251
GlaI GCGC 1 cut(s) 197
GluI GCNGC 3 cut(s) 145, 248, 251
HaeIII GGCC 1 cut(s) 253
HapII CCGG 1 cut(s) 241
HhaI GCGC 1 cut(s) 198
Hin1II CATG 1 cut(s) 260
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HinfI GANTC 3 cut(s) 7, 44, 50
HpaII CCGG 1 cut(s) 241
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 2 cut(s) 138, 174
Hpy188I TCNGA 3 cut(s) 49, 111, 216
Hpy188III TCNNGA 1 cut(s) 241
Hpy8I GTNNAC 2 cut(s) 138, 174
HpyAV CCTTC 3 cut(s) 174, 189, 196
HpyCH4V TGCA 1 cut(s) 147
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 202
HpyF3I CTNAG 3 cut(s) 48, 87, 263
Hsp92II CATG 1 cut(s) 260
HspAI GCGC 1 cut(s) 196
Kpn2I TCCGGA 1 cut(s) 240
LpnPI CCDG 7 cut(s) 21, 117, 126, 154, 173, 181, 254
Lsp1109I GCAGC 2 cut(s) 131, 234
MboII GAAGA 2 cut(s) 91, 226
MhlI GDGCHC 1 cut(s) 65
MlyI GAGTC 2 cut(s) 53, 59
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 5 cut(s) 222, 237, 242, 248, 272
MroI TCCGGA 1 cut(s) 240
MseI TTAA 1 cut(s) 277
MspI CCGG 1 cut(s) 241
MspR9I CCNGG 1 cut(s) 169
MvaI CCWGG 1 cut(s) 169
MvnI CGCG 1 cut(s) 196
MwoI GCNNNNNNNGC 2 cut(s) 11, 202
NdeI CATATG 1 cut(s) 200
NlaIII CATG 1 cut(s) 260
NspI RCATGY 1 cut(s) 260
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 3 cut(s) 146, 249, 252
PleI GAGTC 2 cut(s) 52, 58
PpsI GAGTC 2 cut(s) 52, 58
Psp6I CCWGG 1 cut(s) 167
PspGI CCWGG 1 cut(s) 167
PstNI CAGNNNCTG 1 cut(s) 225
SalI GTCGAC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 277
SatI GCNGC 3 cut(s) 145, 248, 251
SchI GAGTC 2 cut(s) 53, 59
ScrFI CCNGG 1 cut(s) 169
SduI GDGCHC 1 cut(s) 65
SetI ASST 4 cut(s) 98, 107, 173, 234
SsiI CCGC 1 cut(s) 250
StyD4I CCNGG 1 cut(s) 167
TaqI TCGA 1 cut(s) 137
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 277
Tru9I TTAA 1 cut(s) 277
TseI GCWGC 2 cut(s) 144, 247
TspDTI ATGAA 1 cut(s) 171
XceI RCATGY 1 cut(s) 260
XmiI GTMKAC 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.