Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005934

Physical Location & Seq

Genomic Coordinates Forward (+)

48594926 .. 48598177

Gene Structure 3252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG359400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAACTCTCTCCTCCTCTTCTCCCTTCTCTTTTACCGGCACTATGGTCCCCGACCATCACCGCTCAACCCATCTGCCGTAGGAGCCAACGATCTACAAACTATACGCGCGCTTTACTCGATCAGCTATGATCGACAGTTCTGGATGTCGCCGTCGATTGGACTTGAAGAAGTGATGGGTTTTCTTGAACAGTCGTTTCCTGATGTTGAAATAGCTATTGAACTTGGGAAATACAGTTGTATCAGGAATGACAATGTTGAGAATTCTATTGATAGCTACCACGAAGCCTTTGATATTGTTGACCTGATGGTATATAATGGTACATGCTGTTGGCTCTCTTTTCCAATATATTCGGCTGGGAATCGGCCTGTCTACAAGGCAAATGATATGGCTGCATACTTTGTCACATTGATAGATTACTTGCTTGACAGTTTCTTTTGGAGATCAGACATATATAAGTCATCCATGGAGAAGAGGAAATTGCAGTATCATGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CarD_CdnL_TRCF DEAD Helicase_C TRCF

Protein Analysis

165

Amino Acids

19.13

Weight (kDa)

4.94

Isoelectric Point (pI)

55.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005934)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0358351 RchiOBHm_Chr1g0375481 RchiOBHm_Chr3g0482501 RchiOBHm_Chr4g0390221
rosa_roxburghii	Rroxscaffold_1G00020020 Rroxscaffold_1G00050680 Rroxscaffold_2G00094370 Rroxscaffold_2G00146170 Rroxscaffold_3G00221700
rosa_rugosa	Rorug07G0192600
rosa_samantha	Rh1AG168300 Rh1AG275000 Rh1AG401900 Rh2BG094900 Rh2CG096700 Rh2CG359400 Rh2DG203700 Rh2DG226600 Rh2DG560000 Rh3AG248100 Rh4AG347000 Rh4BG103700 Rh6BG341800 Rh6DG087800 Rh7BG302200 Rh7BG324800 Rh7CG214600
rosa_wichuraiana	Rw1G035680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	64
AccI	GTMKAC	1 cut(s)	372
AccII	CGCG	2 cut(s)	108, 110
AciI	CCGC	1 cut(s)	62
AcsI	RAATTY	1 cut(s)	262
AfaI	GTAC	1 cut(s)	322
AfiI	CCNNNNNNNGG	1 cut(s)	158
AgsI	TTSAA	4 cut(s)	167, 188, 209, 221
AluBI	AGCT	3 cut(s)	126, 215, 276
AluI	AGCT	3 cut(s)	126, 215, 276
AoxI	GGCC	1 cut(s)	365
ApeKI	GCWGC	1 cut(s)	392
ApoI	RAATTY	1 cut(s)	262
AspLEI	GCGC	2 cut(s)	110, 112
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	51
AvaII	GGWCC	1 cut(s)	47
BaeI	ACNNNNGTAYC	2 cut(s)	223, 256
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	4 cut(s)	64, 79, 169, 301
BceAI	ACGGC	2 cut(s)	62, 136
BfaI	CTAG	1 cut(s)	496
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	2 cut(s)	49, 85
BsaJI	CCNNGG	1 cut(s)	465
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse118I	RCCGGY	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	465
BseGI	GGATG	2 cut(s)	150, 461
BseLI	CCNNNNNNNGG	1 cut(s)	158
BsePI	GCGCGC	1 cut(s)	108
BseRI	GAGGAG	1 cut(s)	5
BseXI	GCAGC	1 cut(s)	379
BseYI	CCCAGC	1 cut(s)	356
Bsh1236I	CGCG	2 cut(s)	108, 110
BshFI	GGCC	1 cut(s)	367
BsiSI	CCGG	1 cut(s)	37
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	1 cut(s)	367
Bsp143I	GATC	4 cut(s)	91, 120, 130, 443
Bsp19I	CCATGG	1 cut(s)	465
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	1 cut(s)	367
BspFNI	CGCG	2 cut(s)	108, 110
BspLI	GGNNCC	2 cut(s)	49, 85
BsrBI	CCGCTC	1 cut(s)	64
BsrFI	RCCGGY	1 cut(s)	36
BssAI	RCCGGY	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	465
BssHII	GCGCGC	1 cut(s)	108
BssMI	GATC	4 cut(s)	91, 120, 130, 443
BssT1I	CCWWGG	1 cut(s)	465
Bst4CI	ACNGT	4 cut(s)	138, 192, 236, 431
Bst6I	CTCTTC	2 cut(s)	23, 467
BstC8I	GCNNGC	1 cut(s)	110
BstDSI	CCRYGG	1 cut(s)	465
BstF5I	GGATG	2 cut(s)	150, 461
BstFNI	CGCG	2 cut(s)	108, 110
BstHHI	GCGC	2 cut(s)	110, 112
BstKTI	GATC	4 cut(s)	94, 123, 133, 446
BstMBI	GATC	4 cut(s)	91, 120, 130, 443
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNSI	RCATGY	1 cut(s)	327
BstUI	CGCG	2 cut(s)	108, 110
BstV1I	GCAGC	1 cut(s)	379
BsuRI	GGCC	1 cut(s)	367
BtgI	CCRYGG	1 cut(s)	465
BtsCI	GGATG	2 cut(s)	150, 461
Cac8I	GCNNGC	1 cut(s)	110
CfoI	GCGC	2 cut(s)	110, 112
Cfr10I	RCCGGY	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	321
CviAII	CATG	3 cut(s)	324, 466, 491
CviJI	RGCY	9 cut(s)	86, 126, 215, 276, 287, 334, 356, 367, 392
CviKI_1	RGCY	9 cut(s)	86, 126, 215, 276, 287, 334, 356, 367, 392
CviQI	GTAC	1 cut(s)	321
DpnI	GATC	4 cut(s)	93, 122, 132, 445
DpnII	GATC	4 cut(s)	91, 120, 130, 443
Eam1104I	CTCTTC	2 cut(s)	23, 467
EarI	CTCTTC	2 cut(s)	23, 467
Eco130I	CCWWGG	1 cut(s)	465
Eco47I	GGWCC	1 cut(s)	47
EcoRI	GAATTC	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	3 cut(s)	327, 469, 494
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	3 cut(s)	323, 465, 490
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	2 cut(s)	157, 448
Fsp4HI	GCNGC	1 cut(s)	393
FspBI	CTAG	1 cut(s)	496
GlaI	GCGC	2 cut(s)	109, 111
GluI	GCNGC	1 cut(s)	393
GsaI	CCCAGC	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	367
HapII	CCGG	1 cut(s)	37
HhaI	GCGC	2 cut(s)	110, 112
Hin1II	CATG	3 cut(s)	327, 469, 494
Hin6I	GCGC	2 cut(s)	108, 110
HinP1I	GCGC	2 cut(s)	108, 110
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	1 cut(s)	361
HpaII	CCGG	1 cut(s)	37
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	2 cut(s)	301, 373
Hpy188I	TCNGA	1 cut(s)	448
Hpy188III	TCNNGA	4 cut(s)	142, 185, 200, 244
Hpy8I	GTNNAC	2 cut(s)	301, 373
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	4 cut(s)	138, 192, 236, 431
HpyCH4V	TGCA	2 cut(s)	395, 484
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
Hsp92II	CATG	3 cut(s)	327, 469, 494
HspAI	GCGC	2 cut(s)	108, 110
Kzo9I	GATC	4 cut(s)	91, 120, 130, 443
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	7 cut(s)	50, 127, 213, 229, 317, 342, 381
Lsp1109I	GCAGC	1 cut(s)	379
MaeI	CTAG	1 cut(s)	496
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	4 cut(s)	93, 122, 132, 445
MbiI	CCGCTC	1 cut(s)	64
MboI	GATC	4 cut(s)	91, 120, 130, 443
MboII	GAAGA	3 cut(s)	10, 179, 484
MluCI	AATT	2 cut(s)	262, 479
MnlI	CCTC	3 cut(s)	23, 26, 468
MspI	CCGG	1 cut(s)	37
MvnI	CGCG	2 cut(s)	108, 110
MwoI	GCNNNNNNNGC	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	465
NdeII	GATC	4 cut(s)	91, 120, 130, 443
NlaIII	CATG	3 cut(s)	327, 469, 494
NlaIV	GGNNCC	2 cut(s)	49, 85
NmuCI	GTSAC	1 cut(s)	403
NspI	RCATGY	1 cut(s)	327
PauI	GCGCGC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	361
PkrI	GCNGC	1 cut(s)	394
PspFI	CCCAGC	1 cut(s)	356
PspN4I	GGNNCC	2 cut(s)	49, 85
PspPI	GGNCC	1 cut(s)	47
PteI	GCGCGC	1 cut(s)	108
RsaI	GTAC	1 cut(s)	322
RsaNI	GTAC	1 cut(s)	321
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	4 cut(s)	91, 120, 130, 443
Sau96I	GGNCC	1 cut(s)	47
SetI	ASST	4 cut(s)	128, 217, 278, 306
SinI	GGWCC	1 cut(s)	47
Sse9I	AATT	2 cut(s)	262, 479
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	1 cut(s)	496
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	4 cut(s)	138, 192, 236, 431
TaqI	TCGA	3 cut(s)	119, 133, 155
TasI	AATT	2 cut(s)	262, 479
TfiI	GAWTC	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	1 cut(s)	262
XceI	RCATGY	1 cut(s)	327
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.