Rw1G035680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0005934
Physical Location & Seq
Forward (+)
63423220 .. 63425955
2736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G035680.1

Sequence Viewer

Length: 435 bp
ATGGTCTCCGACCCATCTGCCGTAGGAACCAACGATCGACAAACTATACGCGCGCGTTACTCGATCAGCTATGATCTGATCAACAGTTCTGGATGTCGTGGTCGATTGGACAACAGAAATTCTATTACTGTTGTACAGCTTGCTGGAGGAATTGGACTTGAAGAAGTGATGGGTTTTCTTGAACAGTCGTTTCCTGATGTTGAAATAGCTATTGAACTTGGGAAGATGTGTCTTTTTGCAGCAATATTGAAAGAAGCTAGAGGAAACAATGGAGAAATTCTCACAAGGAATAACAATGTTGAGAATTCTATTGATAGCTACCGCGAAGCCTTTGACGTTGTTGACCTGATAGTATATAATGGTACATGCTGTTGGCTCTCTTTTCCAATATATCCGGCTGGGAATCGGCCTGCCTACAAGGTGCTGGACACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.87

Weight (kDa)

4.69

Isoelectric Point (pI)

32.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 51, 53, 55, 324
AciI CCGC 1 cut(s) 322
AcsI RAATTY 3 cut(s) 118, 276, 304
AfaI GTAC 2 cut(s) 135, 364
AgsI TTSAA 5 cut(s) 161, 182, 203, 215, 250
AluBI AGCT 5 cut(s) 69, 139, 209, 257, 318
AluI AGCT 5 cut(s) 69, 139, 209, 257, 318
Alw26I GTCTC 1 cut(s) 10
AoxI GGCC 1 cut(s) 407
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 3 cut(s) 118, 276, 304
AspLEI GCGC 2 cut(s) 53, 55
BbvI GCAGC 1 cut(s) 251
BccI CCATC 2 cut(s) 22, 163
BceAI ACGGC 1 cut(s) 5
BcgI CGANNNNNNTGC 1 cut(s) 33
BclI TGATCA 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 10
BfaI CTAG 1 cut(s) 258
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
BmiI GGNNCC 1 cut(s) 28
BplI GAGNNNNNCTC 2 cut(s) 264, 296
BpmI CTGGAG 1 cut(s) 165
BsaI GGTCTC 1 cut(s) 10
BseGI GGATG 1 cut(s) 98
BsePI GCGCGC 1 cut(s) 51
BseXI GCAGC 1 cut(s) 251
BseYI CCCAGC 1 cut(s) 398
Bsh1236I CGCG 4 cut(s) 51, 53, 55, 324
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 1 cut(s) 409
BsiEI CGRYCG 1 cut(s) 37
BsiSI CCGG 1 cut(s) 395
BsmAI GTCTC 1 cut(s) 10
BsnI GGCC 1 cut(s) 409
Bso31I GGTCTC 1 cut(s) 10
Bsp1407I TGTACA 1 cut(s) 133
Bsp143I GATC 4 cut(s) 34, 63, 73, 78
BspACI CCGC 1 cut(s) 322
BspANI GGCC 1 cut(s) 409
BspFNI CGCG 4 cut(s) 51, 53, 55, 324
BspLI GGNNCC 1 cut(s) 28
BspTNI GGTCTC 1 cut(s) 10
BsrGI TGTACA 1 cut(s) 133
BssHII GCGCGC 1 cut(s) 51
BssMI GATC 4 cut(s) 34, 63, 73, 78
Bst4CI ACNGT 3 cut(s) 86, 130, 186
BstAUI TGTACA 1 cut(s) 133
BstC8I GCNNGC 3 cut(s) 53, 141, 411
BstF5I GGATG 1 cut(s) 98
BstFNI CGCG 4 cut(s) 51, 53, 55, 324
BstHHI GCGC 2 cut(s) 53, 55
BstKTI GATC 4 cut(s) 37, 66, 76, 81
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 4 cut(s) 34, 63, 73, 78
BstMCI CGRYCG 1 cut(s) 37
BstNSI RCATGY 1 cut(s) 369
BstUI CGCG 4 cut(s) 51, 53, 55, 324
BstV1I GCAGC 1 cut(s) 251
BsuRI GGCC 1 cut(s) 409
BtsCI GGATG 1 cut(s) 98
Cac8I GCNNGC 3 cut(s) 53, 141, 411
CfoI GCGC 2 cut(s) 53, 55
Csp6I GTAC 2 cut(s) 134, 363
CviAII CATG 1 cut(s) 366
CviJI RGCY 9 cut(s) 69, 139, 209, 257, 318, 329, 376, 398, 409
CviKI_1 RGCY 9 cut(s) 69, 139, 209, 257, 318, 329, 376, 398, 409
CviQI GTAC 2 cut(s) 134, 363
DpnI GATC 4 cut(s) 36, 65, 75, 80
DpnII GATC 4 cut(s) 34, 63, 73, 78
Eco31I GGTCTC 1 cut(s) 10
EcoRI GAATTC 1 cut(s) 304
FaeI CATG 1 cut(s) 369
FaiI YATR 6 cut(s) 47, 72, 355, 357, 367, 391
FatI CATG 1 cut(s) 365
FbaI TGATCA 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 240
FokI GGATG 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 1 cut(s) 258
GlaI GCGC 2 cut(s) 52, 54
GluI GCNGC 1 cut(s) 240
GsaI CCCAGC 1 cut(s) 402
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 1 cut(s) 409
HapII CCGG 1 cut(s) 395
HhaI GCGC 2 cut(s) 53, 55
Hin1II CATG 1 cut(s) 369
Hin6I GCGC 2 cut(s) 51, 53
HinP1I GCGC 2 cut(s) 51, 53
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 1 cut(s) 403
HpaII CCGG 1 cut(s) 395
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 2 cut(s) 10, 78
Hpy188III TCNNGA 3 cut(s) 90, 179, 194
Hpy8I GTNNAC 1 cut(s) 343
HpyCH4III ACNGT 3 cut(s) 86, 130, 186
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 1 cut(s) 239
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 1 cut(s) 369
HspAI GCGC 2 cut(s) 51, 53
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 4 cut(s) 34, 63, 73, 78
LpnPI CCDG 8 cut(s) 75, 129, 207, 359, 384, 408, 410, 423
Lsp1109I GCAGC 1 cut(s) 251
MaeI CTAG 1 cut(s) 258
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 56
MalI GATC 4 cut(s) 36, 65, 75, 80
MauBI CGCGCGCG 1 cut(s) 51
MboI GATC 4 cut(s) 34, 63, 73, 78
MboII GAAGA 2 cut(s) 173, 235
MluCI AATT 4 cut(s) 118, 150, 276, 304
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 2 cut(s) 140, 254
MspI CCGG 1 cut(s) 395
MvnI CGCG 4 cut(s) 51, 53, 55, 324
NdeII GATC 4 cut(s) 34, 63, 73, 78
NlaIII CATG 1 cut(s) 369
NlaIV GGNNCC 1 cut(s) 28
NspI RCATGY 1 cut(s) 369
PauI GCGCGC 1 cut(s) 51
PfeI GAWTC 1 cut(s) 403
PkrI GCNGC 1 cut(s) 241
Ple19I CGATCG 1 cut(s) 37
PspFI CCCAGC 1 cut(s) 398
PspN4I GGNNCC 1 cut(s) 28
PteI GCGCGC 1 cut(s) 51
PvuI CGATCG 1 cut(s) 37
RsaI GTAC 2 cut(s) 135, 364
RsaNI GTAC 2 cut(s) 134, 363
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 4 cut(s) 34, 63, 73, 78
SetI ASST 8 cut(s) 71, 141, 211, 259, 320, 339, 348, 423
Sse9I AATT 4 cut(s) 118, 150, 276, 304
SsiI CCGC 1 cut(s) 322
SspI AATATT 1 cut(s) 246
SspMI CTAG 1 cut(s) 258
TaaI ACNGT 3 cut(s) 86, 130, 186
TaiI ACGT 1 cut(s) 339
TaqI TCGA 3 cut(s) 37, 62, 103
TasI AATT 4 cut(s) 118, 150, 276, 304
TatI WGTACW 1 cut(s) 133
TfiI GAWTC 1 cut(s) 403
TseI GCWGC 1 cut(s) 239
XapI RAATTY 3 cut(s) 118, 276, 304
XceI RCATGY 1 cut(s) 369
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.