Rroxscaffold_6G00389300
NAC Family

Inactive leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001328
Physical Location & Seq
Forward (+)
2765811 .. 2773221
7411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00389300.1

Sequence Viewer

Length: 1221 bp
ATGGCAAGAGTATCTCCCCGTTTGATGCATTTGGTTCTTGTTATCATTCTATTTTCAGTTAGTCATGCCAAAAATAATTCATCCTCCCAAGCTCTGACCCTTTTCAGAATTCAGCGACTTCTAAACCTTCCTGCTGTTTTGAGTAGATCATATAACTACACAGATTTTTGCAACATCGAACCAAGTTTGTCTTTGACCGTCATATGCTATGAAGAAAAAATAACCCAGCTGCATATAATTGGTGAAAAAAATGCTCCTCTTTTGCCTCGAAACTTTTCAATTGATTTGTTCGTAACTACTCTTGTCAGACTTCCTAGCTTGAAGGTCCTCACATTGGTCTCTCTTGGTTTATGGGGACCTTTGCCTGGTAAAATCTCACAATTATCTGCACTGGAAATACTTAATGTGACTTCAAATTTCTTTTATGGTGTCATCCCTCAAGAGCTTTCATCACTATCAAGCCTCCAAACGCTTATACTTGATGATAACATGTTTTCTGGACCACTTCAAGATTGGATGAGTTCATTCCCTCTTCTTGCTGTTTTTAGTGCAAAGAAGAATTTGTTGAATGCATCTTTGCCCAACTCATTCAGTGGTTTGGTAAGTCTTAGAGTTCTTGGGCTTTCTCATAACCACTTCTTTGGGGAAGTTCCTGATCTTAGTACTTTGACAAACCTTCAAGTTCTTGAATTGGAAGATAATGCTTTTGGTCCTCAGTTTCCTAAACTTGGCAAGAAGTTGGTGACCCTTGTACTGAGTAAGAATAAATTTAGGTCTGGCATCCCTGCTGAAGTGAGCTCTTATCATCAGTTAGAACGGCTTGATCTTTCTTTCAATATGTTTGTCGGGCCATTTCCACCATCATTGCTATCTCTACCTTCCATAACTTATCTGAATGTTTCACGAAACAAATTCACAGGGATGCTTTTTGAAAATTTGTCTTGCAATGCAGAGCTTCAGTCTGTCGATTTGTCCTCAAATCTGTTGTCTGGAAGCTTACCTACATGTCTTCTGTCAGATTCTAAGGACATTGTTGTCCTGTATGCTAGGAATTGTTTATCTACTGGAAATCAAAATCAACATCCACTTCCATTTTGCCGCAACGAAGCATTAGCTGTTGGAATCATCCCTGACAGAAGCAAGCAAAAAAGAGCTTCTAAATCGATTCTGGCATTAGGGATTATTGGAGGAATTTTCGGAGGGTTGTACTTGTCGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

406

Amino Acids

44.6

Weight (kDa)

8.97

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1034
AciI CCGC 1 cut(s) 1099
AcsI RAATTY 7 cut(s) 108, 415, 559, 767, 911, 934, 1191
AcuI CTGAAG 2 cut(s) 810, 941
AfaI GTAC 3 cut(s) 664, 753, 1208
AfiI CCNNNNNNNGG 3 cut(s) 334, 365, 728
AflIII ACRYGT 2 cut(s) 489, 1004
AgsI TTSAA 9 cut(s) 279, 322, 414, 509, 568, 680, 689, 835, 932
AjnI CCWGG 1 cut(s) 364
AluBI AGCT 9 cut(s) 92, 229, 318, 445, 798, 955, 996, 1115, 1154
AluI AGCT 9 cut(s) 92, 229, 318, 445, 798, 955, 996, 1115, 1154
Alw21I GWGCWC 1 cut(s) 800
Alw26I GTCTC 1 cut(s) 343
AoxI GGCC 2 cut(s) 848, 1215
ApeKI GCWGC 1 cut(s) 229
ApoI RAATTY 7 cut(s) 108, 415, 559, 767, 911, 934, 1191
ArsI GACNNNNNNTTYG 2 cut(s) 971, 1003
Asp700I GAANNNNTTC 1 cut(s) 274
AspS9I GGNCC 5 cut(s) 325, 356, 500, 710, 848
AsuHPI GGTGA 2 cut(s) 254, 754
AvaII GGWCC 4 cut(s) 325, 356, 500, 710
BanII GRGCYC 1 cut(s) 800
BarI GAAGNNNNNNTAC 2 cut(s) 985, 1017
BbsI GAAGAC 1 cut(s) 1001
Bbv12I GWGCWC 1 cut(s) 800
BbvI GCAGC 1 cut(s) 216
BccI CCATC 1 cut(s) 868
BceAI ACGGC 1 cut(s) 833
BciT130I CCWGG 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 343
BfaI CTAG 2 cut(s) 315, 1047
BisI GCNGC 2 cut(s) 230, 1099
BlsI GCNGC 2 cut(s) 231, 1100
BmcAI AGTACT 1 cut(s) 664
Bme1390I CCNGG 1 cut(s) 366
Bme18I GGWCC 4 cut(s) 325, 356, 500, 710
BmgT120I GGNCC 5 cut(s) 325, 356, 500, 710, 848
BmiI GGNNCC 1 cut(s) 357
BmrFI CCNGG 1 cut(s) 366
BmsI GCATC 4 cut(s) 15, 581, 789, 912
BpiI GAAGAC 1 cut(s) 1001
BpuEI CTTGAG 1 cut(s) 423
Bsa29I ATCGAT 1 cut(s) 1163
BsaI GGTCTC 1 cut(s) 343
Bsc4I CCNNNNNNNGG 3 cut(s) 334, 365, 728
Bse1I ACTGG 2 cut(s) 396, 1069
Bse3DI GCAATG 2 cut(s) 863, 952
BseBI CCWGG 1 cut(s) 366
BseCI ATCGAT 1 cut(s) 1163
BseGI GGATG 7 cut(s) 80, 432, 522, 780, 927, 1081, 1125
BseLI CCNNNNNNNGG 3 cut(s) 334, 365, 728
BseMI GCAATG 2 cut(s) 863, 952
BseMII CTCAG 2 cut(s) 728, 746
BseNI ACTGG 2 cut(s) 396, 1069
BseRI GAGGAG 1 cut(s) 246
BseXI GCAGC 1 cut(s) 216
BseYI CCCAGC 1 cut(s) 225
BsgI GTGCAG 1 cut(s) 372
BshFI GGCC 2 cut(s) 850, 1217
BshVI ATCGAT 1 cut(s) 1163
BsiHKAI GWGCWC 1 cut(s) 800
BslFI GGGAC 1 cut(s) 369
BslI CCNNNNNNNGG 3 cut(s) 334, 365, 728
BsmAI GTCTC 1 cut(s) 343
BsmFI GGGAC 1 cut(s) 369
BsmI GAATGC 1 cut(s) 574
BsnI GGCC 2 cut(s) 850, 1217
Bso31I GGTCTC 1 cut(s) 343
Bsp1286I GDGCHC 1 cut(s) 800
Bsp143I GATC 3 cut(s) 146, 655, 823
BspACI CCGC 1 cut(s) 1099
BspANI GGCC 2 cut(s) 850, 1217
BspCNI CTCAG 2 cut(s) 727, 747
BspDI ATCGAT 1 cut(s) 1163
BspLI GGNNCC 1 cut(s) 357
BspTNI GGTCTC 1 cut(s) 343
BsrDI GCAATG 2 cut(s) 863, 952
BsrI ACTGG 2 cut(s) 396, 1069
BssMI GATC 3 cut(s) 146, 655, 823
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 537
BstC8I GCNNGC 1 cut(s) 1142
BstDEI CTNAG 5 cut(s) 608, 659, 714, 755, 1023
BstEII GGTNACC 1 cut(s) 742
BstF5I GGATG 7 cut(s) 80, 432, 522, 780, 927, 1081, 1125
BstKTI GATC 3 cut(s) 149, 658, 826
BstMAI GTCTC 1 cut(s) 343
BstMBI GATC 3 cut(s) 146, 655, 823
BstNI CCWGG 1 cut(s) 366
BstNSI RCATGY 2 cut(s) 493, 1008
BstPI GGTNACC 1 cut(s) 742
BstSCI CCNGG 1 cut(s) 364
BstV1I GCAGC 1 cut(s) 216
BstV2I GAAGAC 1 cut(s) 1001
BstXI CCANNNNNNTGG 1 cut(s) 641
Bsu15I ATCGAT 1 cut(s) 1163
BsuRI GGCC 2 cut(s) 850, 1217
BsuTUI ATCGAT 1 cut(s) 1163
BtsCI GGATG 7 cut(s) 80, 432, 522, 780, 927, 1081, 1125
BtsIMutI CAGTG 2 cut(s) 389, 598
Cac8I GCNNGC 1 cut(s) 1142
Cfr13I GGNCC 5 cut(s) 325, 356, 500, 710, 848
ClaI ATCGAT 1 cut(s) 1163
Csp6I GTAC 3 cut(s) 663, 752, 1207
CspCI CAANNNNNGTGG 2 cut(s) 846, 881
CviAII CATG 3 cut(s) 65, 490, 1005
CviQI GTAC 3 cut(s) 663, 752, 1207
DdeI CTNAG 5 cut(s) 608, 659, 714, 755, 1023
DpnI GATC 3 cut(s) 148, 657, 825
DpnII GATC 3 cut(s) 146, 655, 823
DrdI GACNNNNNNGTC 1 cut(s) 1034
DseDI GACNNNNNNGTC 1 cut(s) 1034
Eam1104I CTCTTC 1 cut(s) 537
EarI CTCTTC 1 cut(s) 537
Ecl136II GAGCTC 1 cut(s) 798
Eco24I GRGCYC 1 cut(s) 800
Eco31I GGTCTC 1 cut(s) 343
Eco47I GGWCC 4 cut(s) 325, 356, 500, 710
Eco53kI GAGCTC 1 cut(s) 798
Eco57I CTGAAG 2 cut(s) 810, 941
Eco91I GGTNACC 1 cut(s) 742
EcoICRI GAGCTC 1 cut(s) 798
EcoO109I RGGNCCY 2 cut(s) 325, 356
EcoO65I GGTNACC 1 cut(s) 742
EcoRI GAATTC 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 364
EcoT22I ATGCAT 2 cut(s) 30, 574
EcoT38I GRGCYC 1 cut(s) 800
FaeI CATG 3 cut(s) 68, 493, 1008
FalI AAGNNNNNCTT 2 cut(s) 175, 207
FaqI GGGAC 1 cut(s) 369
FatI CATG 3 cut(s) 64, 489, 1004
FauNDI CATATG 1 cut(s) 203
Fnu4HI GCNGC 2 cut(s) 230, 1099
FokI GGATG 7 cut(s) 67, 419, 529, 767, 934, 1068, 1112
FriOI GRGCYC 1 cut(s) 800
Fsp4HI GCNGC 2 cut(s) 230, 1099
FspBI CTAG 2 cut(s) 315, 1047
GluI GCNGC 2 cut(s) 230, 1099
GsaI CCCAGC 1 cut(s) 229
HaeIII GGCC 2 cut(s) 850, 1217
Hin1II CATG 3 cut(s) 68, 493, 1008
HindIII AAGCTT 1 cut(s) 994
HinfI GANTC 3 cut(s) 1019, 1122, 1165
HphI GGTGA 2 cut(s) 254, 754
Hpy188I TCNGA 6 cut(s) 96, 107, 308, 894, 1018, 1199
Hpy188III TCNNGA 7 cut(s) 440, 498, 509, 653, 686, 903, 990
HpyAV CCTTC 4 cut(s) 137, 316, 686, 888
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 8 cut(s) 28, 171, 232, 389, 551, 572, 945, 950
HpyF3I CTNAG 5 cut(s) 608, 659, 714, 755, 1023
Hsp92II CATG 3 cut(s) 68, 493, 1008
Kzo9I GATC 3 cut(s) 146, 655, 823
LmnI GCTCC 1 cut(s) 259
Lsp1109I GCAGC 1 cut(s) 216
LweI GCATC 4 cut(s) 15, 581, 789, 912
MaeI CTAG 2 cut(s) 315, 1047
MaeIII GTNAC 3 cut(s) 292, 406, 742
MalI GATC 3 cut(s) 148, 657, 825
MboI GATC 3 cut(s) 146, 655, 823
MboII GAAGA 5 cut(s) 224, 524, 568, 707, 1001
MfeI CAATTG 1 cut(s) 279
MhlI GDGCHC 1 cut(s) 800
MmeI TCCRAC 1 cut(s) 1099
Mph1103I ATGCAT 2 cut(s) 30, 574
MroXI GAANNNNTTC 1 cut(s) 274
MseI TTAA 1 cut(s) 402
MslI CAYNNNNRTG 1 cut(s) 920
MspA1I CMGCKG 1 cut(s) 229
MspR9I CCNGG 1 cut(s) 366
MunI CAATTG 1 cut(s) 279
Mva1269I GAATGC 1 cut(s) 574
MvaI CCWGG 1 cut(s) 366
NdeI CATATG 1 cut(s) 203
NdeII GATC 3 cut(s) 146, 655, 823
NlaIII CATG 3 cut(s) 68, 493, 1008
NlaIV GGNNCC 1 cut(s) 357
NmuCI GTSAC 2 cut(s) 406, 742
NsiI ATGCAT 2 cut(s) 30, 574
NspI RCATGY 2 cut(s) 493, 1008
PciI ACATGT 2 cut(s) 489, 1004
PctI GAATGC 1 cut(s) 574
PdmI GAANNNNTTC 1 cut(s) 274
PfeI GAWTC 3 cut(s) 1019, 1122, 1165
PkrI GCNGC 2 cut(s) 231, 1100
PpuMI RGGWCCY 2 cut(s) 325, 356
PscI ACATGT 2 cut(s) 489, 1004
Psp124BI GAGCTC 1 cut(s) 800
Psp5II RGGWCCY 2 cut(s) 325, 356
Psp6I CCWGG 1 cut(s) 364
PspEI GGTNACC 1 cut(s) 742
PspFI CCCAGC 1 cut(s) 225
PspGI CCWGG 1 cut(s) 364
PspN4I GGNNCC 1 cut(s) 357
PspPI GGNCC 5 cut(s) 325, 356, 500, 710, 848
PspPPI RGGWCCY 2 cut(s) 325, 356
PvuII CAGCTG 1 cut(s) 229
RsaI GTAC 3 cut(s) 664, 753, 1208
RsaNI GTAC 3 cut(s) 663, 752, 1207
RseI CAYNNNNRTG 1 cut(s) 920
SacI GAGCTC 1 cut(s) 800
SaqAI TTAA 1 cut(s) 402
SatI GCNGC 2 cut(s) 230, 1099
Sau3AI GATC 3 cut(s) 146, 655, 823
Sau96I GGNCC 5 cut(s) 325, 356, 500, 710, 848
ScaI AGTACT 1 cut(s) 664
ScrFI CCNGG 1 cut(s) 366
SduI GDGCHC 1 cut(s) 800
SfaNI GCATC 4 cut(s) 15, 581, 789, 912
SinI GGWCC 4 cut(s) 325, 356, 500, 710
SmiMI CAYNNNNRTG 1 cut(s) 920
SmlI CTYRAG 1 cut(s) 438
SmoI CTYRAG 1 cut(s) 438
SsiI CCGC 1 cut(s) 1099
SspMI CTAG 2 cut(s) 315, 1047
SstI GAGCTC 1 cut(s) 800
StyD4I CCNGG 1 cut(s) 364
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 4 cut(s) 177, 268, 966, 1163
TatI WGTACW 3 cut(s) 662, 751, 1206
TauI GCSGC 1 cut(s) 1101
TfiI GAWTC 3 cut(s) 1019, 1122, 1165
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TscAI CASTG 2 cut(s) 396, 598
TseFI GTSAC 2 cut(s) 406, 742
TseI GCWGC 1 cut(s) 229
Tsp45I GTSAC 2 cut(s) 406, 742
TspDTI ATGAA 4 cut(s) 69, 225, 438, 513
TspRI CASTG 2 cut(s) 396, 598
VpaK11BI GGWCC 4 cut(s) 325, 356, 500, 710
XapI RAATTY 7 cut(s) 108, 415, 559, 767, 911, 934, 1191
XceI RCATGY 2 cut(s) 493, 1008
XcmI CCANNNNNNNNNTGG 1 cut(s) 510
XmnI GAANNNNTTC 1 cut(s) 274
XspI CTAG 2 cut(s) 315, 1047
ZrmI AGTACT 1 cut(s) 664
Zsp2I ATGCAT 2 cut(s) 30, 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.