Rorug03G0281300
NAC Family

Inactive leucine-rich repeat receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
27956960 .. 27957301
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0281300.1

Sequence Viewer

Length: 255 bp
ATGGCACTGGCAGATTCGGAGTGTAACAAGCATGAGAATTCCGAATTGAGATTGTCATGTTTCTGTAACAAGGCTTTAGTCAATGTTGGTGCTGATTTGGCAAAACTAGTTCCTGGCCAAGTGTCCACTGAGGTAGATGCACGTCTTGCTTATGACACGCATGGAATTGTAAGGAAGGTACTGGCTTTTCTTTGTAACTCAACTTTTTTCCTTTTTCTTTTCAAAGATGATGCTAAAGCATTGGAATTCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

84

Amino Acids

9.35

Weight (kDa)

5.54

Isoelectric Point (pI)

32.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAL_FSA PF00923 10 - 59 5.4e-06 Transaldolase/Fructose-6-phosphate aldolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 115
AcsI RAATTY 2 cut(s) 37, 245
AfaI GTAC 1 cut(s) 180
AgsI TTSAA 1 cut(s) 223
AhlI ACTAGT 1 cut(s) 106
AjiI CACGTC 1 cut(s) 143
AjnI CCWGG 1 cut(s) 112
AoxI GGCC 1 cut(s) 115
ApoI RAATTY 2 cut(s) 37, 245
BalI TGGCCA 1 cut(s) 117
BciT130I CCWGG 1 cut(s) 114
BcuI ACTAGT 1 cut(s) 106
BfaI CTAG 1 cut(s) 107
Bme1390I CCNGG 1 cut(s) 114
BmgBI CACGTC 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 2 cut(s) 127, 220
Bse1I ACTGG 2 cut(s) 12, 186
BseBI CCWGG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 2 cut(s) 12, 186
BshFI GGCC 1 cut(s) 117
BsnI GGCC 1 cut(s) 117
BspANI GGCC 1 cut(s) 117
BspCNI CTCAG 1 cut(s) 121
BsrI ACTGG 2 cut(s) 12, 186
Bst2UI CCWGG 1 cut(s) 114
BstAPI GCANNNNNTGC 1 cut(s) 146
BstDEI CTNAG 1 cut(s) 129
BstMWI GCNNNNNNNGC 2 cut(s) 98, 146
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BsuRI GGCC 1 cut(s) 117
BtrI CACGTC 1 cut(s) 143
BtsIMutI CAGTG 2 cut(s) 5, 126
Csp6I GTAC 1 cut(s) 179
CviAII CATG 3 cut(s) 32, 57, 161
CviJI RGCY 3 cut(s) 74, 117, 185
CviKI_1 RGCY 3 cut(s) 74, 117, 185
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 1 cut(s) 129
EaeI YGGCCR 1 cut(s) 115
EcoRI GAATTC 2 cut(s) 37, 245
EcoRII CCWGG 1 cut(s) 112
FaeI CATG 3 cut(s) 35, 60, 164
FaiI YATR 4 cut(s) 33, 58, 153, 162
FatI CATG 3 cut(s) 31, 56, 160
FspBI CTAG 1 cut(s) 107
HaeIII GGCC 1 cut(s) 117
Hin1II CATG 3 cut(s) 35, 60, 164
HinfI GANTC 1 cut(s) 14
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 2 cut(s) 19, 43
Hpy8I GTNNAC 1 cut(s) 126
HpyAV CCTTC 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 146
HpyF3I CTNAG 1 cut(s) 129
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 3 cut(s) 35, 60, 164
LpnPI CCDG 3 cut(s) 99, 126, 167
LweI GCATC 2 cut(s) 127, 220
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 3 cut(s) 23, 65, 194
MlsI TGGCCA 1 cut(s) 117
MluCI AATT 4 cut(s) 37, 44, 165, 245
MluNI TGGCCA 1 cut(s) 117
MnlI CCTC 1 cut(s) 124
Mox20I TGGCCA 1 cut(s) 117
MscI TGGCCA 1 cut(s) 117
Msp20I TGGCCA 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 98, 146
NlaIII CATG 3 cut(s) 35, 60, 164
PfeI GAWTC 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 114
SetI ASST 3 cut(s) 135, 145, 180
SfaNI GCATC 2 cut(s) 127, 220
SpeI ACTAGT 1 cut(s) 106
Sse9I AATT 4 cut(s) 37, 44, 165, 245
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 112
TaiI ACGT 1 cut(s) 145
TasI AATT 4 cut(s) 37, 44, 165, 245
TfiI GAWTC 1 cut(s) 14
TscAI CASTG 2 cut(s) 12, 133
TspRI CASTG 2 cut(s) 12, 133
XapI RAATTY 2 cut(s) 37, 245
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.