Rorug03G0281200
NAC Family

Inactive leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001328
Physical Location & Seq
Forward (+)
27948987 .. 27952254
3268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0281200.1

Sequence Viewer

Length: 1173 bp
ATGGGCGGTGGTCCCATTCCCAACAATTCAGGTGGGTCCAGCGGTACCTGCATCTGTATGACTGGCCCCGGTACCAATGTGCCAGTGCCGGGTCGACTACGCCTGGTGCCACGTGACTGCTCGCTCTGTGCTGGGCGGGCAGTGGCCTCCAACTTCCTCTTTAGTTCCACGAAACGTGCCGTGAGCGTAGCCACCTGTCTTTGGGCTTCAGCCTTTTCCTTGCGCTCCTCCTCACGCTCTCTGTTTGCCTTATATCACCAAAAGTGTGAGCATCGGAAAGGCAGGGTATCACCAAGGAGGCGACGGCCCGGTTCTCTATGTCGGCGAGGAGAGATCAGAAATCAGGGATTGAATAAGAAGTTCCTCAAGGAAAGTGAAGGATTTGGAACCCCTGAAGAGCAGTCACGAGTTGATTGCGATTCTGTTTCAATTAAGTACATTACACGGTTCGATTTGAGCGGCGACGATAGGGGGACGCCTTTGAAGTTCACTGTCAGTAGAGTTGTCTGCTATTTCCTTGCTAATGGCTTCATAGCCATTCTGATTTTGATATCCCAGTTCGCCTTTTATGGGGCTGCTTTGCTACATATTTTCATCAAGAAAAGGTTTCAATTGGGGGGAAAAACTTCTCAATGGTTTGTGAATATAGCCTCTGTTTTCTGTTCATGGAAGGTGGTAAGGGTTGTAAGAGCTAATCCACTAATGGTTACAGCACTTGCTGCAATTACTTTAGCATGCTTGGTTCATCCAGGTTTGGGTCTACTTGTTCTCTTGCTCTCTCATGCTTTGTGCTGTCATACTGCTCTTTGCAGTCATGCACGAAGACATGAATTATTTGATTATAAGAAAGACGGAAATGGTGGGCCTGACAAACTTACATTCAAACGTGATGGAGATCATGACTATCCTACTTTTGTATCCCTCTTCCAAATTATCTTGATGAGTGGGATAAGCAAGAATGCTTTAGAGGAGCTGTCATCTGAAAGAAGTTCTGATGATCGCATACCCCTTATTTATGCAATATCATTAGTTGATGATAACTCTTTAATTCAAACTGCAATAAGATATGGAAAGGATGTTGCGAAACTTGATCTGCAGAACTGCAAGAATTGGAATCGTTTTCTTAAGATACACTACGATAGGATTGGGAAGGATGGATTCTTTAGCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

390

Amino Acids

43.18

Weight (kDa)

9.65

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBC1 PF14443 345 - 388 1.5e-12 DBC1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 843
Acc36I ACCTGC 1 cut(s) 56
Acc65I GGTACC 2 cut(s) 44, 71
AccB1I GGYRCC 3 cut(s) 44, 71, 106
AccBSI CCGCTC 1 cut(s) 459
AccI GTMKAC 2 cut(s) 94, 760
AciI CCGC 4 cut(s) 6, 42, 136, 459
AcuI CTGAAG 2 cut(s) 192, 414
AcvI CACGTG 1 cut(s) 113
AcyI GRCGYC 1 cut(s) 476
AfaI GTAC 3 cut(s) 46, 73, 437
AfiI CCNNNNNNNGG 4 cut(s) 89, 201, 570, 755
AflII CTTAAG 1 cut(s) 1124
AgsI TTSAA 6 cut(s) 352, 429, 484, 611, 883, 1052
AjnI CCWGG 2 cut(s) 102, 748
AluBI AGCT 2 cut(s) 692, 973
AluI AGCT 2 cut(s) 692, 973
AoxI GGCC 4 cut(s) 64, 144, 305, 863
ApeKI GCWGC 2 cut(s) 575, 719
Asp700I GAANNNNTTC 1 cut(s) 625
Asp718I GGTACC 2 cut(s) 44, 71
AspLEI GCGC 1 cut(s) 225
AspS9I GGNCC 5 cut(s) 11, 36, 65, 306, 863
AsuC2I CCSGG 3 cut(s) 69, 90, 309
AsuHPI GGTGA 2 cut(s) 248, 282
AvaII GGWCC 2 cut(s) 11, 36
BaeI ACNNNNGTAYC 4 cut(s) 63, 96, 900, 933
BanI GGYRCC 3 cut(s) 44, 71, 106
BauI CACGAG 1 cut(s) 405
BbrPI CACGTG 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 829
BbvI GCAGC 2 cut(s) 562, 706
BccI CCATC 2 cut(s) 884, 1148
BceAI ACGGC 2 cut(s) 164, 320
BcgI CGANNNNNNTGC 2 cut(s) 396, 430
BciT130I CCWGG 2 cut(s) 104, 750
BciVI GTATCC 1 cut(s) 928
BcnI CCSGG 3 cut(s) 69, 90, 309
BfmI CTRYAG 1 cut(s) 1094
BfrI CTTAAG 1 cut(s) 1124
BfuAI ACCTGC 1 cut(s) 56
BfuI GTATCC 1 cut(s) 928
BisI GCNGC 3 cut(s) 460, 576, 720
BlsI GCNGC 3 cut(s) 461, 577, 721
Bme1390I CCNGG 5 cut(s) 69, 90, 104, 309, 750
Bme18I GGWCC 2 cut(s) 11, 36
BmgT120I GGNCC 5 cut(s) 11, 36, 65, 306, 863
BmiI GGNNCC 7 cut(s) 13, 37, 46, 67, 73, 108, 388
BmrFI CCNGG 5 cut(s) 69, 90, 104, 309, 750
BmrI ACTGGG 1 cut(s) 550
BmsI GCATC 2 cut(s) 60, 280
BmuI ACTGGG 1 cut(s) 550
BpiI GAAGAC 1 cut(s) 829
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 3 cut(s) 69, 90, 309
BsaAI YACGTR 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 894
BsaHI GRCGYC 1 cut(s) 476
BsaJI CCNNGG 2 cut(s) 67, 293
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 201, 570, 755
Bse1I ACTGG 3 cut(s) 67, 83, 556
Bse8I GATNNNNATC 1 cut(s) 894
BseBI CCWGG 2 cut(s) 104, 750
BseDI CCNNGG 2 cut(s) 67, 293
BseGI GGATG 3 cut(s) 745, 1081, 1159
BseJI GATNNNNATC 1 cut(s) 894
BseLI CCNNNNNNNGG 4 cut(s) 89, 201, 570, 755
BseNI ACTGG 3 cut(s) 67, 83, 556
BseRI GAGGAG 4 cut(s) 217, 220, 342, 983
BseXI GCAGC 2 cut(s) 562, 706
BseYI CCCAGC 1 cut(s) 131
BshFI GGCC 4 cut(s) 66, 146, 307, 865
BshNI GGYRCC 3 cut(s) 44, 71, 106
BsiSI CCGG 3 cut(s) 69, 89, 309
BslFI GGGAC 1 cut(s) 487
BslI CCNNNNNNNGG 4 cut(s) 89, 201, 570, 755
BsmFI GGGAC 1 cut(s) 487
BsmI GAATGC 1 cut(s) 964
BsnI GGCC 4 cut(s) 66, 146, 307, 865
Bsp143I GATC 4 cut(s) 333, 895, 997, 1090
BspACI CCGC 4 cut(s) 6, 42, 136, 459
BspANI GGCC 4 cut(s) 66, 146, 307, 865
BspHI TCATGA 1 cut(s) 898
BspLI GGNNCC 7 cut(s) 13, 37, 46, 67, 73, 108, 388
BspMAI CTGCAG 1 cut(s) 1098
BspMI ACCTGC 1 cut(s) 56
BspQI GCTCTTC 1 cut(s) 390
BspT107I GGYRCC 3 cut(s) 44, 71, 106
BspTI CTTAAG 1 cut(s) 1124
BsrBI CCGCTC 1 cut(s) 459
BsrI ACTGG 3 cut(s) 67, 83, 556
BssECI CCNNGG 2 cut(s) 67, 293
BssMI GATC 4 cut(s) 333, 895, 997, 1090
BssNI GRCGYC 1 cut(s) 476
BssSI CACGAG 1 cut(s) 405
BssT1I CCWWGG 1 cut(s) 293
Bst2BI CACGAG 1 cut(s) 405
Bst2UI CCWGG 2 cut(s) 104, 750
Bst4CI ACNGT 2 cut(s) 447, 493
Bst6I CTCTTC 2 cut(s) 390, 929
BstACI GRCGYC 1 cut(s) 476
BstAFI CTTAAG 1 cut(s) 1124
BstAPI GCANNNNNTGC 1 cut(s) 719
BstBAI YACGTR 1 cut(s) 113
BstC8I GCNNGC 3 cut(s) 122, 138, 736
BstF5I GGATG 3 cut(s) 745, 1081, 1159
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 4 cut(s) 336, 898, 1000, 1093
BstMBI GATC 4 cut(s) 333, 895, 997, 1090
BstMWI GCNNNNNNNGC 3 cut(s) 48, 137, 719
BstNI CCWGG 2 cut(s) 104, 750
BstNSI RCATGY 1 cut(s) 738
BstSCI CCNGG 5 cut(s) 67, 88, 102, 307, 748
BstSFI CTRYAG 1 cut(s) 1094
BstV1I GCAGC 2 cut(s) 562, 706
BstV2I GAAGAC 1 cut(s) 829
BsuI GTATCC 1 cut(s) 928
BsuRI GGCC 4 cut(s) 66, 146, 307, 865
BtsCI GGATG 3 cut(s) 745, 1081, 1159
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 3 cut(s) 90, 147, 489
BveI ACCTGC 1 cut(s) 56
Cac8I GCNNGC 3 cut(s) 122, 138, 736
CciI TCATGA 1 cut(s) 898
CfoI GCGC 1 cut(s) 225
Cfr13I GGNCC 5 cut(s) 11, 36, 65, 306, 863
CseI GACGC 1 cut(s) 484
Csp6I GTAC 3 cut(s) 45, 72, 436
CspCI CAANNNNNGTGG 2 cut(s) 13, 48
CviAII CATG 6 cut(s) 666, 735, 782, 815, 827, 899
CviQI GTAC 3 cut(s) 45, 72, 436
DpnI GATC 4 cut(s) 335, 897, 999, 1092
DpnII GATC 4 cut(s) 333, 895, 997, 1090
Eam1104I CTCTTC 2 cut(s) 390, 929
EarI CTCTTC 2 cut(s) 390, 929
Eco130I CCWWGG 1 cut(s) 293
Eco32I GATATC 1 cut(s) 552
Eco47I GGWCC 2 cut(s) 11, 36
Eco57I CTGAAG 2 cut(s) 192, 414
Eco72I CACGTG 1 cut(s) 113
EcoRII CCWGG 2 cut(s) 102, 748
EcoRV GATATC 1 cut(s) 552
EcoT14I CCWWGG 1 cut(s) 293
ErhI CCWWGG 1 cut(s) 293
FaeI CATG 6 cut(s) 669, 738, 785, 818, 830, 902
FaqI GGGAC 1 cut(s) 487
FatI CATG 6 cut(s) 665, 734, 781, 814, 826, 898
FauI CCCGC 1 cut(s) 129
FblI GTMKAC 2 cut(s) 94, 760
Fnu4HI GCNGC 3 cut(s) 460, 576, 720
FokI GGATG 3 cut(s) 732, 1088, 1166
Fsp4HI GCNGC 3 cut(s) 460, 576, 720
GlaI GCGC 1 cut(s) 224
GluI GCNGC 3 cut(s) 460, 576, 720
GsaI CCCAGC 1 cut(s) 135
HaeIII GGCC 4 cut(s) 66, 146, 307, 865
HapII CCGG 3 cut(s) 69, 89, 309
HgaI GACGC 1 cut(s) 484
HhaI GCGC 1 cut(s) 225
Hin1I GRCGYC 1 cut(s) 476
Hin1II CATG 6 cut(s) 669, 738, 785, 818, 830, 902
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HincII GTYRAC 1 cut(s) 95
HindII GTYRAC 1 cut(s) 95
HinfI GANTC 3 cut(s) 419, 1114, 1158
HpaII CCGG 3 cut(s) 69, 89, 309
HphI GGTGA 2 cut(s) 248, 282
Hpy166II GTNNAC 3 cut(s) 95, 489, 761
Hpy188I TCNGA 5 cut(s) 276, 338, 543, 982, 994
Hpy188III TCNNGA 4 cut(s) 405, 598, 899, 937
Hpy8I GTNNAC 3 cut(s) 95, 489, 761
Hpy99I CGWCG 2 cut(s) 306, 467
HpyAV CCTTC 3 cut(s) 371, 664, 1144
HpyCH4III ACNGT 2 cut(s) 447, 493
HpyCH4IV ACGT 3 cut(s) 112, 175, 886
HpyCH4V TGCA 8 cut(s) 51, 722, 810, 818, 1019, 1058, 1096, 1104
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 137, 719
HpySE526I ACGT 3 cut(s) 112, 175, 886
Hsp92I GRCGYC 1 cut(s) 476
Hsp92II CATG 6 cut(s) 669, 738, 785, 818, 830, 902
HspAI GCGC 1 cut(s) 223
KpnI GGTACC 2 cut(s) 48, 75
Kzo9I GATC 4 cut(s) 333, 895, 997, 1090
LguI GCTCTTC 1 cut(s) 390
LmnI GCTCC 2 cut(s) 230, 970
Lsp1109I GCAGC 2 cut(s) 562, 706
LweI GCATC 2 cut(s) 60, 280
MaeII ACGT 3 cut(s) 112, 175, 886
MaeIII GTNAC 3 cut(s) 113, 402, 706
MalI GATC 4 cut(s) 335, 897, 999, 1092
MbiI CCGCTC 1 cut(s) 459
MboI GATC 4 cut(s) 333, 895, 997, 1090
MboII GAAGA 3 cut(s) 407, 834, 916
MfeI CAATTG 1 cut(s) 611
MluCI AATT 8 cut(s) 25, 429, 611, 723, 830, 930, 1047, 1108
MmeI TCCRAC 1 cut(s) 174
MroXI GAANNNNTTC 1 cut(s) 625
MseI TTAA 3 cut(s) 432, 1046, 1125
MslI CAYNNNNRTG 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 42
MspCI CTTAAG 1 cut(s) 1124
MspI CCGG 3 cut(s) 69, 89, 309
MspR9I CCNGG 5 cut(s) 69, 90, 104, 309, 750
MunI CAATTG 1 cut(s) 611
Mva1269I GAATGC 1 cut(s) 964
MvaI CCWGG 2 cut(s) 104, 750
MwoI GCNNNNNNNGC 3 cut(s) 48, 137, 719
NciI CCSGG 3 cut(s) 69, 90, 309
NdeII GATC 4 cut(s) 333, 895, 997, 1090
NlaIII CATG 6 cut(s) 669, 738, 785, 818, 830, 902
NlaIV GGNNCC 7 cut(s) 13, 37, 46, 67, 73, 108, 388
NmuCI GTSAC 2 cut(s) 113, 402
NspI RCATGY 1 cut(s) 738
PaeI GCATGC 1 cut(s) 738
PagI TCATGA 1 cut(s) 898
PciSI GCTCTTC 1 cut(s) 390
PctI GAATGC 1 cut(s) 964
PdmI GAANNNNTTC 1 cut(s) 625
PfeI GAWTC 3 cut(s) 419, 1114, 1158
PkrI GCNGC 3 cut(s) 461, 577, 721
PmaCI CACGTG 1 cut(s) 113
PmlI CACGTG 1 cut(s) 113
Ppu21I YACGTR 1 cut(s) 113
PsiI TTATAA 1 cut(s) 843
Psp6I CCWGG 2 cut(s) 102, 748
PspCI CACGTG 1 cut(s) 113
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 2 cut(s) 102, 748
PspN4I GGNNCC 7 cut(s) 13, 37, 46, 67, 73, 108, 388
PspPI GGNCC 5 cut(s) 11, 36, 65, 306, 863
PstI CTGCAG 1 cut(s) 1098
RsaI GTAC 3 cut(s) 46, 73, 437
RsaNI GTAC 3 cut(s) 45, 72, 436
RseI CAYNNNNRTG 1 cut(s) 56
SalI GTCGAC 1 cut(s) 93
SapI GCTCTTC 1 cut(s) 390
SaqAI TTAA 3 cut(s) 432, 1046, 1125
SatI GCNGC 3 cut(s) 460, 576, 720
Sau3AI GATC 4 cut(s) 333, 895, 997, 1090
Sau96I GGNCC 5 cut(s) 11, 36, 65, 306, 863
ScrFI CCNGG 5 cut(s) 69, 90, 104, 309, 750
SfaNI GCATC 2 cut(s) 60, 280
SfcI CTRYAG 1 cut(s) 1094
SinI GGWCC 2 cut(s) 11, 36
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 2 cut(s) 365, 1124
SmoI CTYRAG 2 cut(s) 365, 1124
SphI GCATGC 1 cut(s) 738
Sse9I AATT 8 cut(s) 25, 429, 611, 723, 830, 930, 1047, 1108
SsiI CCGC 4 cut(s) 6, 42, 136, 459
StyD4I CCNGG 5 cut(s) 67, 88, 102, 307, 748
StyI CCWWGG 1 cut(s) 293
TaaI ACNGT 2 cut(s) 447, 493
TaiI ACGT 3 cut(s) 115, 178, 889
TaqI TCGA 2 cut(s) 94, 450
TasI AATT 8 cut(s) 25, 429, 611, 723, 830, 930, 1047, 1108
TatI WGTACW 1 cut(s) 435
TauI GCSGC 1 cut(s) 462
TfiI GAWTC 3 cut(s) 419, 1114, 1158
Tru1I TTAA 3 cut(s) 432, 1046, 1125
Tru9I TTAA 3 cut(s) 432, 1046, 1125
TscAI CASTG 3 cut(s) 90, 147, 496
TseFI GTSAC 2 cut(s) 113, 402
TseI GCWGC 2 cut(s) 575, 719
Tsp45I GTSAC 2 cut(s) 113, 402
TspDTI ATGAA 5 cut(s) 520, 583, 654, 734, 843
TspGWI ACGGA 1 cut(s) 867
TspRI CASTG 3 cut(s) 90, 147, 496
Vha464I CTTAAG 1 cut(s) 1124
VpaK11BI GGWCC 2 cut(s) 11, 36
XceI RCATGY 1 cut(s) 738
XmiI GTMKAC 2 cut(s) 94, 760
XmnI GAANNNNTTC 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.