Rroxscaffold_7G00200130

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
47418800 .. 47419327
528 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00200130.1

Sequence Viewer

Length: 528 bp
ATGGCGGCTATCCCATTCTCAGCAAAGTCAGCTACTCATTCTACGTTCATCTCGAGCTTCATAGCAGGCTCCAACCACATAAGAAGACATTCATGGCTGTTCTTGACCTCAACCTCTGGTTCTGTTTCTGGCCGAGCTAGGACAAAGCTCTGTGTGAAGAATGTGGCTGCTACTGATCAAAAGCAAGAACCTGAAGACGTTGCCACCCGAGAAGATTCTGCATCCATTTCATCGATTATCAAATACCACGCGGAATTCACACCTTGCTTCTCTATGGAATCGTTTGGACTTCCCAAGGCATTCTATGCCACCGCGGAGAGTGTTCGTGATATGCTTATCATTAACTGGAATACTACATATGAGTACTGTGAGAGGTTGAATGTAAAGCAGGCGTATTATCTCTCAATGGAGTATCTACAGGGTAGAGCATTGCTAAATGCAATTGGCAACTTGGAGCTTTCAGGGCCTTATGCAGAGGCTTTGGAAAAGCTTGGGCACAATCTTGAGGATGTAGCTAGGCAGGACTAG

Protein Analysis

175

Amino Acids

19.49

Weight (kDa)

6.21

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 251, 314
AciI CCGC 4 cut(s) 5, 251, 312, 314
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 1 cut(s) 254
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 1 cut(s) 365
AgsI TTSAA 1 cut(s) 379
AluBI AGCT 7 cut(s) 32, 57, 137, 148, 457, 490, 515
AluI AGCT 7 cut(s) 32, 57, 137, 148, 457, 490, 515
Ama87I CYCGRG 2 cut(s) 52, 207
AoxI GGCC 2 cut(s) 130, 464
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 464
AvaI CYCGRG 2 cut(s) 52, 207
BaeGI GKGCMC 1 cut(s) 498
BbsI GAAGAC 2 cut(s) 91, 201
BbvI GCAGC 1 cut(s) 154
BclI TGATCA 1 cut(s) 175
BfaI CTAG 3 cut(s) 138, 516, 526
BfmI CTRYAG 1 cut(s) 416
BisI GCNGC 2 cut(s) 6, 168
BlsI GCNGC 2 cut(s) 7, 169
BmcAI AGTACT 1 cut(s) 365
BmeT110I CYCGRG 2 cut(s) 52, 207
BmgT120I GGNCC 1 cut(s) 464
BmiI GGNNCC 1 cut(s) 70
BmsI GCATC 1 cut(s) 230
BpiI GAAGAC 2 cut(s) 91, 201
BpuEI CTTGAG 1 cut(s) 524
Bsa29I ATCGAT 1 cut(s) 233
BsaJI CCNNGG 2 cut(s) 294, 312
Bse1I ACTGG 1 cut(s) 350
Bse3DI GCAATG 1 cut(s) 428
BseCI ATCGAT 1 cut(s) 233
BseDI CCNNGG 2 cut(s) 294, 312
BseGI GGATG 2 cut(s) 221, 514
BseMI GCAATG 1 cut(s) 428
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 350
BseSI GKGCMC 1 cut(s) 498
BseXI GCAGC 1 cut(s) 154
Bsh1236I CGCG 2 cut(s) 251, 314
BshFI GGCC 2 cut(s) 132, 466
BshVI ATCGAT 1 cut(s) 233
BsiHKCI CYCGRG 2 cut(s) 52, 207
BsmI GAATGC 1 cut(s) 299
BsnI GGCC 2 cut(s) 132, 466
BsoBI CYCGRG 2 cut(s) 52, 207
Bsp1286I GDGCHC 1 cut(s) 498
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 4 cut(s) 5, 251, 312, 314
BspANI GGCC 2 cut(s) 132, 466
BspCNI CTCAG 1 cut(s) 32
BspDI ATCGAT 1 cut(s) 233
BspFNI CGCG 2 cut(s) 251, 314
BspLI GGNNCC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 428
BsrI ACTGG 1 cut(s) 350
BssECI CCNNGG 2 cut(s) 294, 312
BssMI GATC 1 cut(s) 175
BssT1I CCWWGG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 368
BstAPI GCANNNNNTGC 1 cut(s) 305
BstC8I GCNNGC 2 cut(s) 67, 390
BstDEI CTNAG 1 cut(s) 19
BstDSI CCRYGG 1 cut(s) 312
BstF5I GGATG 2 cut(s) 221, 514
BstFNI CGCG 2 cut(s) 251, 314
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 3 cut(s) 29, 305, 463
BstSFI CTRYAG 1 cut(s) 416
BstSLI GKGCMC 1 cut(s) 498
BstUI CGCG 2 cut(s) 251, 314
BstV1I GCAGC 1 cut(s) 154
BstV2I GAAGAC 2 cut(s) 91, 201
Bsu15I ATCGAT 1 cut(s) 233
BsuRI GGCC 2 cut(s) 132, 466
BsuTUI ATCGAT 1 cut(s) 233
BtgI CCRYGG 1 cut(s) 312
BtsCI GGATG 2 cut(s) 221, 514
Cac8I GCNNGC 2 cut(s) 67, 390
Cfr13I GGNCC 1 cut(s) 464
Cfr42I CCGCGG 1 cut(s) 315
ClaI ATCGAT 1 cut(s) 233
Csp6I GTAC 1 cut(s) 364
CviAII CATG 1 cut(s) 93
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 1 cut(s) 19
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
EaeI YGGCCR 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 294
Eco57I CTGAAG 1 cut(s) 213
Eco88I CYCGRG 2 cut(s) 52, 207
EcoO109I RGGNCCY 1 cut(s) 464
EcoRI GAATTC 1 cut(s) 254
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 1 cut(s) 96
FaiI YATR 9 cut(s) 62, 80, 94, 275, 306, 332, 358, 360, 471
FatI CATG 1 cut(s) 92
FauNDI CATATG 1 cut(s) 358
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 2 cut(s) 6, 168
FokI GGATG 2 cut(s) 208, 521
Fsp4HI GCNGC 2 cut(s) 6, 168
FspBI CTAG 3 cut(s) 138, 516, 526
GluI GCNGC 2 cut(s) 6, 168
HaeIII GGCC 2 cut(s) 132, 466
Hin1II CATG 1 cut(s) 96
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 2 cut(s) 215, 278
Hpy188III TCNNGA 4 cut(s) 52, 103, 326, 503
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4IV ACGT 2 cut(s) 44, 198
HpyCH4V TGCA 3 cut(s) 221, 440, 473
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 305, 463
HpyF3I CTNAG 1 cut(s) 19
HpySE526I ACGT 2 cut(s) 44, 198
Hsp92II CATG 1 cut(s) 96
Ksp22I TGATCA 1 cut(s) 175
KspI CCGCGG 1 cut(s) 315
Kzo9I GATC 1 cut(s) 175
LmnI GCTCC 2 cut(s) 74, 454
LpnPI CCDG 9 cut(s) 51, 102, 114, 204, 331, 374, 404, 447, 506
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 1 cut(s) 230
MaeI CTAG 3 cut(s) 138, 516, 526
MaeII ACGT 2 cut(s) 44, 198
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 4 cut(s) 96, 169, 206, 224
MfeI CAATTG 1 cut(s) 441
MhlI GDGCHC 1 cut(s) 498
MluCI AATT 2 cut(s) 254, 441
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 5 cut(s) 118, 124, 366, 469, 499
MroXI GAANNNNTTC 1 cut(s) 88
MseI TTAA 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 314
MunI CAATTG 1 cut(s) 441
Mva1269I GAATGC 1 cut(s) 299
MvnI CGCG 2 cut(s) 251, 314
MwoI GCNNNNNNNGC 3 cut(s) 29, 305, 463
NdeI CATATG 1 cut(s) 358
NdeII GATC 1 cut(s) 175
NlaIII CATG 1 cut(s) 96
NlaIV GGNNCC 1 cut(s) 70
NmeAIII GCCGAG 1 cut(s) 158
PaeR7I CTCGAG 1 cut(s) 52
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PctI GAATGC 1 cut(s) 299
PdmI GAANNNNTTC 1 cut(s) 88
PfeI GAWTC 2 cut(s) 215, 278
PkrI GCNGC 2 cut(s) 7, 169
PspN4I GGNNCC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 464
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
SacII CCGCGG 1 cut(s) 315
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 2 cut(s) 6, 168
Sau3AI GATC 1 cut(s) 175
Sau96I GGNCC 1 cut(s) 464
ScaI AGTACT 1 cut(s) 365
SduI GDGCHC 1 cut(s) 498
SfaNI GCATC 1 cut(s) 230
SfcI CTRYAG 1 cut(s) 416
Sfr274I CTCGAG 1 cut(s) 52
Sfr303I CCGCGG 1 cut(s) 315
SgrBI CCGCGG 1 cut(s) 315
SlaI CTCGAG 1 cut(s) 52
SmlI CTYRAG 2 cut(s) 52, 503
SmoI CTYRAG 2 cut(s) 52, 503
Sse9I AATT 2 cut(s) 254, 441
SsiI CCGC 4 cut(s) 5, 251, 312, 314
SspMI CTAG 3 cut(s) 138, 516, 526
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 1 cut(s) 368
TaiI ACGT 2 cut(s) 47, 201
TaqI TCGA 2 cut(s) 53, 233
TasI AATT 2 cut(s) 254, 441
TatI WGTACW 1 cut(s) 363
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 215, 278
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 4 cut(s) 37, 49, 81, 219
XapI RAATTY 1 cut(s) 254
XhoI CTCGAG 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 88
XspI CTAG 3 cut(s) 138, 516, 526
ZrmI AGTACT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.