Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002988

Physical Location & Seq

Genomic Coordinates Reverse (-)

75081714 .. 75088444

Gene Structure 6731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG571100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2988 bp

ATGGCGGTTTCTCAATTCTCTTGTAGTGGAGCAATGGAGTCTTTGCACTACAAATCGCAGGGGAAACTGATCGATTTCGGCTCCAGGAGGAGGTTCAGTTCGAGGTTGTTGCTGGCGAGGACGTTGAATTTGAATCCGAGGACTCATCGGAGCCGCCACCGGAGGTCGGTTCTGGTCACCAACGTCATAAAGGATCCGGACGTCGCACAAGAAAATACAGGCAGCTCATTCACACCTGATGCTGTATCCGTCGCTTCAAGTATCAAATACCATGCTGAGTTTACGCCGTCGTTTTCTCCGGAGAAATTTGAGCTTCCAAAGGCCTACTTTGCAACTGCGCAAAGTGTCCGTGATGCGCTCATTGTTAACTGGAATGCAACGAATGAATATTATGAAAAGTTGCATGTAAAGCAGGCATATTATTTGTCAATGGAATTTCTACAGGGTAGAGCGCTGTTAAATGCAGTTGGTAATTTGGAGCTAGCAGGCGCATATGCAGAGGCTTTAAGCAAGCTTGGACACAAATTAGAAACTGTGGCTGACCAGGAGCCAGATGCTGCCCTCGGGAATGGGGGTCTCGGTCGGCTTGCCTCATGCTTCTTGGATTCTTTGGCAACTTTGAACTACCCAGCATGGGGTTATGGACTTAGGTACAAGTATGGGTTATTTAAACAGCGAATTACCAAAGACGGTCAAGAAGAAGTAGCTGAGGATTGGCTTGAGCTGGGAAATCCCTGGGAGATTGTGAGGAATGATGTTTCTTATCATGTAAAATTCTACGGTAATGTTGCTACTGGATCAGATGGAAAACGGCATTGGATTGGAGGAGAAGATATTGAGGCTGTTGCTTATGATGTTCCAATACCAGGATACAAAACTAAAACGACTATCAACTTGCGGCTTTGGTCAACCAAAGCTCCGTCAGAGGATTTTGATTTATATTCTTTTAATTCTGGGGAGCACACAAAAGCATGTGAAGCTTTAGCAAATGCCGAAAAGATTTGCTATGTACTTTATCCTGGCGATGACTCACTGGAGGGAAAGACACTTCGTCTGAAGCAACAATATACTTTATGTTCAGCTTCTCTCCAAGATATTGTTGCACGTTTTGAGAGAAGATCCGGAACAAACCTAAATTGGGAAGAGTTCCCCGAGAAGGTTGCAGTGCAGATGAATGACACTCATCCAACTCTCTGCATTCCTGAGCTGATTAGGATTTTAATGGATTTGAAGGGTTTGACATGGAAGGAGGCCTGGAATATTACTCAAAGAACGGTTGCATATACAAACCATACTGTTCTACCTGAGGCATTGGAGAAATGGAGTTTGGAACTTATGCAGAAGCTGCTTCCTCGACATGTGGAGATCATAGAACTGATAGATGAGGAGTTTCATATTGTACAGCTCATTAACACCATAGTCTCGGAGTATGGTACAGAAGATTGTGATTTATTAGAAAAGAAACTGAAGGAGATGAGAATCTTAGAAAATGTTGATTTGCCTGCCACATATGCAAAGTTATTTGTTAAACCCAAAGAAAGCTCCGTTGTTCTTCCCACTGAAAAACTTGAAGATTCAAAAAAGGATGTCGGGGCCGTTGATGAAGAAATTGCGCAAAAACTTGAAGACTCAAAAAAGGATGTCAGGGCCATTGATGAAGAAATTGAGCCTGAGAAGAAACCCATAGAGGAAAAGGATGTCGGGGCCATTGATGAAGAAATTGAGCCTAAGAAGGAACCCGTAGAGGAAAAGAAAAAGGCACCCCCAAAACCACCTAAGCTAGTTCGTATGGCAAACCTTTGTGTTGCAGGTGGTCATGCAGTAAATGGTGTTGCTGAGATACATAGTGAAATAGTAAAGGATGAAGTATTCAATTCATTTTATAAATTGTGGCCTAAGAAGTTTCAAAACAAGACAAATGGCGTGACACCAAGAAGATGGATCCGCTTCTGCAATCCAGATTTGAGTAATATTCTAACCAAATGGATTGGCACAGAAGACTGGGTCTTAAATACAGAAAAACTGGCCGAGTTACGACAGTTTGTGGATGATGAGGATCTCCAAACTCAATGGAGGCAAGCAAAAAGGAGCAACAAGTTGAAAGTTGTATCATTCATTAAAGAAAAAACAGGATTTTCTGTCAACCCTGATGCAATGTTTGATATCCAGGTGAAGCGCATTCATGAATACAAGAGACAACTTATGAATATTTTGGGAATTGTTTACCGGTACAAGAAAATGAAAGAAATGAGTGCTTCACAAAGGAAAGCAAAGTTTGTTCCACGTGTTTGTATGTTCGGAGGAAAAGCATTTGCAACGTATGTACAAGCCAAGAGAATTGTGAAGTTTATCACAGATGTCGCGGAGACTGTAAATCATGATCCTAGTATAGGTGATCTACTAAAGGTTATCTTTGTACCTGATTATAATGTCAGTGTTGCTGAATTATTAATTCCTGCAAGTGAGCTCTCACAGCACATCAGTACTGCCGGGATGGAGGCCAGTGGCACCAGCAACATGAAGTTTGCAATGAATGGCTGCATCCTAATTGGGACTCTGGATGGAGCCAATGTTGAAATAAGAGAAGAGGTTGGAGCAGATAACTTTTTCCTCTTTGGTGCTGAAGCTCATGAGATTGCTGGGCTGAGAAAAGAACGAGCTGAGGGGAAGTTTGTTCCAGACCCCCGTTTTGAAGAAGTCAAGGAATTTGTCACAAGTGGTGTTTTTGGGTTGTACGATTATGATGACCTGATCGGATCCTTGGAAGGAAATGAAGGATTTGGTCGTGCTGATTACTTCCTTGTTGGCAAAGACTTCCCCAGTTACATAGAATGCCAAGAGAAGGTTGATGAGGCGTATCGGGACCAAAAGAAATGGACAAGAATGTCAATCCTGAACACAGCAGGCTCATCCAAGTTTAGCAGTGACAGAACCATCCACGAATATGCTAAAGACATATGGAACATTAACCCTGTCGAATTACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004645 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008184 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009414 GO:0009415 GO:0009501 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010035 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0019842 GO:0030170 GO:0036094 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0050662 GO:0050896 GO:0055114 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 ko02026 ko04217 ko04910 ko04922 ko04931 map00500 map01100 map01110 map02026 map04217 map04910 map04922 map04931

Pfam Domains

Protein Families

Phosphorylase

Protein Analysis

995

Amino Acids

112.86

Weight (kDa)

5.75

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phosphorylase	PF00343	170 - 466	6.5e-127	Carbohydrate phosphorylase
Phosphorylase	PF00343	590 - 989	1.3e-165	Carbohydrate phosphorylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29320
fragaria_vesca	FvH4_4g30370 FvH4_6g47260 FvH4_6g47260 FvH4_6g47260 FvH4_6g47260
malus_domestica	MD00G1156200.v1.1 MD09G1062600.v1.1 MD16G1063300.v1.1
prunus_persica	Prupe.1G283400_v2.0.a1 Prupe.1G283400_v2.0.a1 Prupe.3G257600_v2.0.a1
pyrus_communis	pycom111g05290
rosa_chinensis	RchiOBHm_Chr2g0166331 RchiOBHm_Chr4g0438671
rosa_laevigata	RLG00000006342 RLG00000021610
rosa_multiflora	Rmu_sc0000738.1_g000042 Rmu_sc0002505.1_g000002 Rmu_sc0007974.1_g000007
rosa_roxburghii	Rroxscaffold_2G00084990 Rroxscaffold_5G00379690 Rroxscaffold_7G00200130
rosa_rugosa	Rorug02G0522200 Rorug04G0312500 Rorug04G0312600 Rorug04G0312600
rosa_samantha	Rh2AG588200 Rh2BG600200 Rh2CG571100 Rh2DG610400 Rh4AG363000 Rh4BG374300 Rh4CG388400 Rh4DG368900
rosa_wichuraiana	Rw0G007140 Rw0G016690 Rw2G049020

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1884, 2427
AarI	CACCTGC	1 cut(s)	1799
AasI	GACNNNNNNGTC	1 cut(s)	2884
AatII	GACGTC	1 cut(s)	204
Acc16I	TGCGCA	2 cut(s)	339, 1614
Acc36I	ACCTGC	1 cut(s)	1799
AccB1I	GGYRCC	2 cut(s)	1759, 2507
AccII	CGCG	1 cut(s)	2363
AccIII	TCCGGA	3 cut(s)	196, 298, 1121
AciI	CCGC	5 cut(s)	5, 154, 898, 1945, 2363
AcoI	YGGCCR	1 cut(s)	2025
AcsI	RAATTY	5 cut(s)	127, 305, 434, 773, 2705
AcuI	CTGAAG	3 cut(s)	1076, 1487, 2643
AcvI	CACGTG	1 cut(s)	2285
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	9 cut(s)	653, 1011, 1401, 1435, 2231, 2325, 2418, 2485, 2735
AfeI	AGCGCT	1 cut(s)	453
AfiI	CCNNNNNNNGG	9 cut(s)	90, 166, 634, 635, 866, 1138, 1156, 2390, 2842
AflIII	ACRYGT	2 cut(s)	1357, 2284
AgeI	ACCGGT	1 cut(s)	2226
AhdI	GACNNNNNGTC	1 cut(s)	1050
AjnI	CCWGG	7 cut(s)	83, 543, 734, 865, 1018, 1253, 2166
AjuI	GAANNNNNNNTTGG	4 cut(s)	799, 831, 1310, 1342
AloI	GAACNNNNNNTCC	2 cut(s)	82, 114
Alw21I	GWGCWC	2 cut(s)	963, 2469
Alw26I	GTCTC	4 cut(s)	581, 1426, 2188, 2360
AlwNI	CAGNNNCTG	2 cut(s)	557, 1345
Ama87I	CYCGRG	2 cut(s)	563, 1151
Aor13HI	TCCGGA	3 cut(s)	196, 298, 1121
Aor51HI	AGCGCT	1 cut(s)	453
AoxI	GGCC	8 cut(s)	321, 1251, 1593, 1647, 1704, 1892, 2025, 2499
ApeKI	GCWGC	4 cut(s)	222, 557, 1345, 2538
ApoI	RAATTY	5 cut(s)	127, 305, 434, 773, 2705
ArsI	GACNNNNNNTTYG	4 cut(s)	112, 144, 2672, 2704
AseI	ATTAAT	1 cut(s)	2450
AsiGI	ACCGGT	1 cut(s)	2226
AspLEI	GCGC	6 cut(s)	340, 358, 454, 491, 1615, 2178
AspS9I	GGNCC	4 cut(s)	1593, 1647, 1704, 2863
AsuC2I	CCSGG	1 cut(s)	2491
AsuHPI	GGTGA	3 cut(s)	169, 2182, 2405
AsuNHI	GCTAGC	1 cut(s)	481
AvaI	CYCGRG	2 cut(s)	563, 1151
AvaII	GGWCC	1 cut(s)	2863
AxyI	CCTNAGG	1 cut(s)	1305
BamHI	GGATCC	3 cut(s)	193, 1941, 2756
BanI	GGYRCC	2 cut(s)	1759, 2507
BanII	GRGCYC	1 cut(s)	2469
BbrPI	CACGTG	1 cut(s)	2285
BbsI	GAAGAC	2 cut(s)	1632, 2004
Bbv12I	GWGCWC	2 cut(s)	963, 2469
BbvCI	CCTCAGC	2 cut(s)	708, 2661
BbvI	GCAGC	4 cut(s)	234, 544, 1332, 2525
BccI	CCATC	5 cut(s)	797, 1932, 2488, 2555, 2942
BceAI	ACGGC	3 cut(s)	271, 827, 1580
BcgI	CGANNNNNNTGC	4 cut(s)	91, 125, 1142, 1176
BciT130I	CCWGG	7 cut(s)	85, 545, 736, 867, 1020, 1255, 2168
BciVI	GTATCC	2 cut(s)	256, 863
BcnI	CCSGG	1 cut(s)	2491
BcoDI	GTCTC	4 cut(s)	581, 1426, 2188, 2360
BfaI	CTAG	3 cut(s)	482, 1781, 2385
BfmI	CTRYAG	1 cut(s)	440
BfoI	RGCGCY	1 cut(s)	455
BfuAI	ACCTGC	1 cut(s)	1799
BfuI	GTATCC	2 cut(s)	256, 863
BisI	GCNGC	6 cut(s)	154, 223, 558, 899, 1346, 2539
BlsI	GCNGC	6 cut(s)	155, 224, 559, 900, 1347, 2540
BmcAI	AGTACT	1 cut(s)	2485
Bme1390I	CCNGG	8 cut(s)	85, 545, 736, 867, 1020, 1255, 2168, 2491
Bme18I	GGWCC	1 cut(s)	2863
BmeRI	GACNNNNNGTC	1 cut(s)	1050
BmeT110I	CYCGRG	2 cut(s)	563, 1151
BmgT120I	GGNCC	4 cut(s)	1593, 1647, 1704, 2863
BmrFI	CCNGG	8 cut(s)	85, 545, 736, 867, 1020, 1255, 2168, 2491
BmrI	ACTGGG	2 cut(s)	2011, 2814
BmsI	GCATC	5 cut(s)	229, 343, 544, 2140, 2550
BmtI	GCTAGC	1 cut(s)	485
BmuI	ACTGGG	2 cut(s)	2011, 2814
BpiI	GAAGAC	2 cut(s)	1632, 2004
BpmI	CTGGAG	2 cut(s)	67, 1055
Bpu10I	CCTNAGC	4 cut(s)	708, 1203, 1776, 2661
BpuEI	CTTGAG	1 cut(s)	740
BpuMI	CCSGG	1 cut(s)	2491
Bsa29I	ATCGAT	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	2285
BsaBI	GATNNNNATC	2 cut(s)	1478, 2055
BsaHI	GRCGYC	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	581
BsaJI	CCNNGG	5 cut(s)	137, 562, 734, 735, 2760
BsaWI	WCCGGW	5 cut(s)	159, 196, 298, 1121, 2226
BsaXI	ACNNNNNCTCC	6 cut(s)	82, 112, 901, 931, 2556, 2586
Bsc4I	CCNNNNNNNGG	9 cut(s)	90, 166, 634, 635, 866, 1138, 1156, 2390, 2842
Bse118I	RCCGGY	1 cut(s)	2226
Bse1I	ACTGG	7 cut(s)	374, 799, 1038, 2006, 2028, 2502, 2820
Bse21I	CCTNAGG	1 cut(s)	1305
Bse3DI	GCAATG	3 cut(s)	39, 2160, 2535
Bse8I	GATNNNNATC	2 cut(s)	1478, 2055
BseAI	TCCGGA	3 cut(s)	196, 298, 1121
BseBI	CCWGG	7 cut(s)	85, 545, 736, 867, 1020, 1255, 2168
BseCI	ATCGAT	1 cut(s)	72
BseDI	CCNNGG	5 cut(s)	137, 562, 734, 735, 2760
BseJI	GATNNNNATC	2 cut(s)	1478, 2055
BseLI	CCNNNNNNNGG	9 cut(s)	90, 166, 634, 635, 866, 1138, 1156, 2390, 2842
BseMI	GCAATG	3 cut(s)	39, 2160, 2535
BseMII	CTCAG	8 cut(s)	267, 699, 1194, 1296, 1662, 1827, 2636, 2652
BseNI	ACTGG	7 cut(s)	374, 799, 1038, 2006, 2028, 2502, 2820
BseRI	GAGGAG	3 cut(s)	103, 840, 1400
BseXI	GCAGC	4 cut(s)	234, 544, 1332, 2525
BseYI	CCCAGC	3 cut(s)	628, 724, 2639
BsgI	GTGCAG	1 cut(s)	1187
Bsh1236I	CGCG	1 cut(s)	2363
Bsh1285I	CGRYCG	1 cut(s)	583
BshFI	GGCC	8 cut(s)	323, 1253, 1595, 1649, 1706, 1894, 2027, 2501
BshNI	GGYRCC	2 cut(s)	1759, 2507
BshTI	ACCGGT	1 cut(s)	2226
BshVI	ATCGAT	1 cut(s)	72
BsiEI	CGRYCG	1 cut(s)	583
BsiHKAI	GWGCWC	2 cut(s)	963, 2469
BsiHKCI	CYCGRG	2 cut(s)	563, 1151
BsiSI	CCGG	6 cut(s)	160, 197, 299, 1122, 2227, 2490
BslFI	GGGAC	2 cut(s)	2566, 2876
BslI	CCNNNNNNNGG	9 cut(s)	90, 166, 634, 635, 866, 1138, 1156, 2390, 2842
BsmAI	GTCTC	4 cut(s)	581, 1426, 2188, 2360
BsmFI	GGGAC	2 cut(s)	2566, 2876
BsmI	GAATGC	4 cut(s)	379, 1197, 2178, 2837
BsnI	GGCC	8 cut(s)	323, 1253, 1595, 1649, 1706, 1894, 2027, 2501
Bso31I	GGTCTC	1 cut(s)	581
BsoBI	CYCGRG	2 cut(s)	563, 1151
Bsp1286I	GDGCHC	2 cut(s)	963, 2469
Bsp13I	TCCGGA	3 cut(s)	196, 298, 1121
Bsp1407I	TGTACA	2 cut(s)	1399, 2323
BspACI	CCGC	5 cut(s)	5, 154, 898, 1945, 2363
BspANI	GGCC	8 cut(s)	323, 1253, 1595, 1649, 1706, 1894, 2027, 2501
BspCNI	CTCAG	8 cut(s)	268, 700, 1195, 1297, 1663, 1828, 2637, 2653
BspDI	ATCGAT	1 cut(s)	72
BspEI	TCCGGA	3 cut(s)	196, 298, 1121
BspFNI	CGCG	1 cut(s)	2363
BspHI	TCATGA	3 cut(s)	2182, 2377, 2629
BspMI	ACCTGC	1 cut(s)	1799
BspOI	GCTAGC	1 cut(s)	485
BspT107I	GGYRCC	2 cut(s)	1759, 2507
BspTNI	GGTCTC	1 cut(s)	581
BsrDI	GCAATG	3 cut(s)	39, 2160, 2535
BsrFI	RCCGGY	1 cut(s)	2226
BsrGI	TGTACA	2 cut(s)	1399, 2323
BsrI	ACTGG	7 cut(s)	374, 799, 1038, 2006, 2028, 2502, 2820
BssAI	RCCGGY	1 cut(s)	2226
BssECI	CCNNGG	5 cut(s)	137, 562, 734, 735, 2760
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	2760
Bst2UI	CCWGG	7 cut(s)	85, 545, 736, 867, 1020, 1255, 2168
Bst4CI	ACNGT	8 cut(s)	535, 692, 782, 1276, 1297, 2040, 2371, 2985
Bst6I	CTCTTC	2 cut(s)	1137, 2580
BstACI	GRCGYC	1 cut(s)	201
BstAPI	GCANNNNNTGC	1 cut(s)	1345
BstAUI	TGTACA	2 cut(s)	1399, 2323
BstBAI	YACGTR	1 cut(s)	2285
BstC8I	GCNNGC	9 cut(s)	114, 414, 483, 487, 512, 588, 1503, 2079, 2905
BstEII	GGTNACC	1 cut(s)	175
BstENI	CCTNNNNNAGG	1 cut(s)	2388
BstFNI	CGCG	1 cut(s)	2363
BstH2I	RGCGCY	1 cut(s)	455
BstHHI	GCGC	6 cut(s)	340, 358, 454, 491, 1615, 2178
BstMAI	GTCTC	4 cut(s)	581, 1426, 2188, 2360
BstMCI	CGRYCG	1 cut(s)	583
BstMWI	GCNNNNNNNGC	6 cut(s)	329, 409, 977, 1345, 1511, 2473
BstNI	CCWGG	7 cut(s)	85, 545, 736, 867, 1020, 1255, 2168
BstNSI	RCATGY	3 cut(s)	407, 975, 1361
BstPI	GGTNACC	1 cut(s)	175
BstSCI	CCNGG	8 cut(s)	83, 543, 734, 865, 1018, 1253, 2166, 2489
BstSFI	CTRYAG	1 cut(s)	440
BstUI	CGCG	1 cut(s)	2363
BstV1I	GCAGC	4 cut(s)	234, 544, 1332, 2525
BstV2I	GAAGAC	2 cut(s)	1632, 2004
BstX2I	RGATCY	5 cut(s)	193, 1118, 1941, 2056, 2756
BstXI	CCANNNNNNTGG	1 cut(s)	1938
BstYI	RGATCY	5 cut(s)	193, 1118, 1941, 2056, 2756
Bsu15I	ATCGAT	1 cut(s)	72
Bsu36I	CCTNAGG	1 cut(s)	1305
BsuI	GTATCC	2 cut(s)	256, 863
BsuRI	GGCC	8 cut(s)	323, 1253, 1595, 1649, 1706, 1894, 2027, 2501
BsuTUI	ATCGAT	1 cut(s)	72
BtgZI	GCGATG	1 cut(s)	1038
BtsI	GCAGTG	2 cut(s)	1170, 2929
BtsIMutI	CAGTG	6 cut(s)	1031, 1170, 1557, 2440, 2509, 2929
BveI	ACCTGC	1 cut(s)	1799
Cac8I	GCNNGC	9 cut(s)	114, 414, 483, 487, 512, 588, 1503, 2079, 2905
CaiI	CAGNNNCTG	2 cut(s)	557, 1345
CciI	TCATGA	3 cut(s)	2182, 2377, 2629
CfoI	GCGC	6 cut(s)	340, 358, 454, 491, 1615, 2178
Cfr10I	RCCGGY	1 cut(s)	2226
Cfr13I	GGNCC	4 cut(s)	1593, 1647, 1704, 2863
ClaI	ATCGAT	1 cut(s)	72
Csp6I	GTAC	9 cut(s)	652, 1010, 1400, 1434, 2230, 2324, 2417, 2484, 2734
CspAI	ACCGGT	1 cut(s)	2226
CviQI	GTAC	9 cut(s)	652, 1010, 1400, 1434, 2230, 2324, 2417, 2484, 2734
DraI	TTTAAA	1 cut(s)	670
DrdI	GACNNNNNNGTC	1 cut(s)	2884
DriI	GACNNNNNGTC	1 cut(s)	1050
DseDI	GACNNNNNNGTC	1 cut(s)	2884
EaeI	YGGCCR	1 cut(s)	2025
Eam1104I	CTCTTC	2 cut(s)	1137, 2580
Eam1105I	GACNNNNNGTC	1 cut(s)	1050
EarI	CTCTTC	2 cut(s)	1137, 2580
Ecl136II	GAGCTC	1 cut(s)	2467
Eco130I	CCWWGG	1 cut(s)	2760
Eco147I	AGGCCT	2 cut(s)	323, 1253
Eco24I	GRGCYC	1 cut(s)	2469
Eco31I	GGTCTC	1 cut(s)	581
Eco32I	GATATC	1 cut(s)	2164
Eco47I	GGWCC	1 cut(s)	2863
Eco47III	AGCGCT	1 cut(s)	453
Eco53kI	GAGCTC	1 cut(s)	2467
Eco57I	CTGAAG	3 cut(s)	1076, 1487, 2643
Eco72I	CACGTG	1 cut(s)	2285
Eco81I	CCTNAGG	1 cut(s)	1305
Eco88I	CYCGRG	2 cut(s)	563, 1151
Eco91I	GGTNACC	1 cut(s)	175
EcoICRI	GAGCTC	1 cut(s)	2467
EcoNI	CCTNNNNNAGG	1 cut(s)	2388
EcoO65I	GGTNACC	1 cut(s)	175
EcoRII	CCWGG	7 cut(s)	83, 543, 734, 865, 1018, 1253, 2166
EcoRV	GATATC	1 cut(s)	2164
EcoT14I	CCWWGG	1 cut(s)	2760
EcoT38I	GRGCYC	1 cut(s)	2469
ErhI	CCWWGG	1 cut(s)	2760
FalI	AAGNNNNNCTT	4 cut(s)	311, 343, 2396, 2428
FaqI	GGGAC	2 cut(s)	2566, 2876
FauNDI	CATATG	3 cut(s)	493, 1510, 2957
Fnu4HI	GCNGC	6 cut(s)	154, 223, 558, 899, 1346, 2539
FriOI	GRGCYC	1 cut(s)	2469
Fsp4HI	GCNGC	6 cut(s)	154, 223, 558, 899, 1346, 2539
FspBI	CTAG	3 cut(s)	482, 1781, 2385
FspI	TGCGCA	2 cut(s)	339, 1614
GlaI	GCGC	6 cut(s)	339, 357, 453, 490, 1614, 2177
GluI	GCNGC	6 cut(s)	154, 223, 558, 899, 1346, 2539
GsaI	CCCAGC	3 cut(s)	632, 728, 2643
GsuI	CTGGAG	2 cut(s)	67, 1055
HaeII	RGCGCY	1 cut(s)	455
HaeIII	GGCC	8 cut(s)	323, 1253, 1595, 1649, 1706, 1894, 2027, 2501
HapII	CCGG	6 cut(s)	160, 197, 299, 1122, 2227, 2490
HhaI	GCGC	6 cut(s)	340, 358, 454, 491, 1615, 2178
Hin1I	GRCGYC	1 cut(s)	201
Hin6I	GCGC	6 cut(s)	338, 356, 452, 489, 1613, 2176
HinP1I	GCGC	6 cut(s)	338, 356, 452, 489, 1613, 2176
HincII	GTYRAC	3 cut(s)	367, 909, 2143
HindII	GTYRAC	3 cut(s)	367, 909, 2143
HindIII	AAGCTT	2 cut(s)	512, 978
HinfI	GANTC	9 cut(s)	38, 133, 142, 605, 1028, 1479, 1574, 1628, 2554
HpaI	GTTAAC	1 cut(s)	367
HpaII	CCGG	6 cut(s)	160, 197, 299, 1122, 2227, 2490
HphI	GGTGA	3 cut(s)	169, 2182, 2405
Hpy166II	GTNNAC	5 cut(s)	282, 367, 909, 2143, 2224
Hpy188I	TCNGA	8 cut(s)	138, 150, 802, 925, 1056, 1426, 2300, 2756
Hpy8I	GTNNAC	5 cut(s)	282, 367, 909, 2143, 2224
Hpy99I	CGWCG	3 cut(s)	206, 254, 292
HpyAV	CCTTC	8 cut(s)	1150, 1225, 1240, 1462, 1726, 2759, 2768, 2836
HpyCH4III	ACNGT	8 cut(s)	535, 692, 782, 1276, 1297, 2040, 2371, 2985
HpyCH4IV	ACGT	6 cut(s)	122, 183, 201, 1105, 2284, 2318
HpyF10VI	GCNNNNNNNGC	6 cut(s)	329, 409, 977, 1345, 1511, 2473
HpySE526I	ACGT	6 cut(s)	122, 183, 201, 1105, 2284, 2318
Hsp92I	GRCGYC	1 cut(s)	201
HspAI	GCGC	6 cut(s)	338, 356, 452, 489, 1613, 2176
Kpn2I	TCCGGA	3 cut(s)	196, 298, 1121
KspAI	GTTAAC	1 cut(s)	367
Lsp1109I	GCAGC	4 cut(s)	234, 544, 1332, 2525
LweI	GCATC	5 cut(s)	229, 343, 544, 2140, 2550
MaeI	CTAG	3 cut(s)	482, 1781, 2385
MaeII	ACGT	6 cut(s)	122, 183, 201, 1105, 2284, 2318
MaeIII	GTNAC	6 cut(s)	175, 1924, 2031, 2710, 2822, 2924
MflI	RGATCY	5 cut(s)	193, 1118, 1941, 2056, 2756
MhlI	GDGCHC	2 cut(s)	963, 2469
MlyI	GAGTC	5 cut(s)	47, 136, 1022, 1622, 2548
MmeI	TCCRAC	2 cut(s)	1211, 2572
MroI	TCCGGA	3 cut(s)	196, 298, 1121
MslI	CAYNNNNRTG	1 cut(s)	2943
MspI	CCGG	6 cut(s)	160, 197, 299, 1122, 2227, 2490
MspR9I	CCNGG	8 cut(s)	85, 545, 736, 867, 1020, 1255, 2168, 2491
Mva1269I	GAATGC	4 cut(s)	379, 1197, 2178, 2837
MvaI	CCWGG	7 cut(s)	85, 545, 736, 867, 1020, 1255, 2168
MvnI	CGCG	1 cut(s)	2363
MwoI	GCNNNNNNNGC	6 cut(s)	329, 409, 977, 1345, 1511, 2473
NciI	CCSGG	1 cut(s)	2491
NdeI	CATATG	3 cut(s)	493, 1510, 2957
NheI	GCTAGC	1 cut(s)	481
NmeAIII	GCCGAG	1 cut(s)	2053
NmuCI	GTSAC	4 cut(s)	175, 1924, 2710, 2924
NsbI	TGCGCA	2 cut(s)	339, 1614
NspI	RCATGY	3 cut(s)	407, 975, 1361
PagI	TCATGA	3 cut(s)	2182, 2377, 2629
PaqCI	CACCTGC	1 cut(s)	1799
PasI	CCCWGGG	1 cut(s)	735
PceI	AGGCCT	2 cut(s)	323, 1253
PciI	ACATGT	1 cut(s)	1357
PctI	GAATGC	4 cut(s)	379, 1197, 2178, 2837
PfeI	GAWTC	4 cut(s)	133, 605, 1479, 1574
PflFI	GACNNNGTC	1 cut(s)	2003
PfoI	TCCNGGA	1 cut(s)	83
PinAI	ACCGGT	1 cut(s)	2226
PkrI	GCNGC	6 cut(s)	155, 224, 559, 900, 1347, 2540
PleI	GAGTC	5 cut(s)	46, 136, 1022, 1622, 2548
PmaCI	CACGTG	1 cut(s)	2285
PmlI	CACGTG	1 cut(s)	2285
PpsI	GAGTC	5 cut(s)	46, 136, 1022, 1622, 2548
Ppu21I	YACGTR	1 cut(s)	2285
PscI	ACATGT	1 cut(s)	1357
PshBI	ATTAAT	1 cut(s)	2450
PsiI	TTATAA	2 cut(s)	1884, 2427
Psp124BI	GAGCTC	1 cut(s)	2469
Psp6I	CCWGG	7 cut(s)	83, 543, 734, 865, 1018, 1253, 2166
PspCI	CACGTG	1 cut(s)	2285
PspEI	GGTNACC	1 cut(s)	175
PspFI	CCCAGC	3 cut(s)	628, 724, 2639
PspGI	CCWGG	7 cut(s)	83, 543, 734, 865, 1018, 1253, 2166
PspPI	GGNCC	4 cut(s)	1593, 1647, 1704, 2863
PstNI	CAGNNNCTG	2 cut(s)	557, 1345
PsuI	RGATCY	5 cut(s)	193, 1118, 1941, 2056, 2756
PsyI	GACNNNGTC	1 cut(s)	2003
RsaI	GTAC	9 cut(s)	653, 1011, 1401, 1435, 2231, 2325, 2418, 2485, 2735
RsaNI	GTAC	9 cut(s)	652, 1010, 1400, 1434, 2230, 2324, 2417, 2484, 2734
RseI	CAYNNNNRTG	1 cut(s)	2943
SacI	GAGCTC	1 cut(s)	2469
SatI	GCNGC	6 cut(s)	154, 223, 558, 899, 1346, 2539
Sau96I	GGNCC	4 cut(s)	1593, 1647, 1704, 2863
ScaI	AGTACT	1 cut(s)	2485
SchI	GAGTC	5 cut(s)	47, 136, 1022, 1622, 2548
ScrFI	CCNGG	8 cut(s)	85, 545, 736, 867, 1020, 1255, 2168, 2491
SduI	GDGCHC	2 cut(s)	963, 2469
SfaNI	GCATC	5 cut(s)	229, 343, 544, 2140, 2550
SfcI	CTRYAG	1 cut(s)	440
SinI	GGWCC	1 cut(s)	2863
SmiMI	CAYNNNNRTG	1 cut(s)	2943
SmlI	CTYRAG	1 cut(s)	719
SmoI	CTYRAG	1 cut(s)	719
SseBI	AGGCCT	2 cut(s)	323, 1253
SsiI	CCGC	5 cut(s)	5, 154, 898, 1945, 2363
SspI	AATATT	4 cut(s)	389, 1261, 1972, 2209
SspMI	CTAG	3 cut(s)	482, 1781, 2385
SstI	GAGCTC	1 cut(s)	2469
StuI	AGGCCT	2 cut(s)	323, 1253
StyD4I	CCNGG	8 cut(s)	83, 543, 734, 865, 1018, 1253, 2166, 2489
StyI	CCWWGG	1 cut(s)	2760
TaaI	ACNGT	8 cut(s)	535, 692, 782, 1276, 1297, 2040, 2371, 2985
TaiI	ACGT	6 cut(s)	125, 186, 204, 1108, 2287, 2321
TaqI	TCGA	4 cut(s)	72, 101, 1354, 2976
TaqII	GACCGA	1 cut(s)	569
TatI	WGTACW	4 cut(s)	1009, 1399, 2323, 2483
TauI	GCSGC	2 cut(s)	156, 901
TfiI	GAWTC	4 cut(s)	133, 605, 1479, 1574
TscAI	CASTG	6 cut(s)	1038, 1170, 1564, 2440, 2509, 2929
TseFI	GTSAC	4 cut(s)	175, 1924, 2710, 2924
TseI	GCWGC	4 cut(s)	222, 557, 1345, 2538
Tsp45I	GTSAC	4 cut(s)	175, 1924, 2710, 2924
TspGWI	ACGGA	4 cut(s)	238, 338, 909, 1534
TspRI	CASTG	6 cut(s)	1038, 1170, 1564, 2440, 2509, 2929
Tth111I	GACNNNGTC	1 cut(s)	2003
VpaK11BI	GGWCC	1 cut(s)	2863
VspI	ATTAAT	1 cut(s)	2450
XagI	CCTNNNNNAGG	1 cut(s)	2388
XapI	RAATTY	5 cut(s)	127, 305, 434, 773, 2705
XceI	RCATGY	3 cut(s)	407, 975, 1361
XspI	CTAG	3 cut(s)	482, 1781, 2385
ZraI	GACGTC	1 cut(s)	202
ZrmI	AGTACT	1 cut(s)	2485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.