Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002988

Physical Location & Seq

Genomic Coordinates Reverse (-)

48788758 .. 48789165

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0312500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGATTGTCGTGGCCTGGCTCTCTTCTAGCGCATCGAGATCCCGGTCCGCCTTCGAACCTATTCTGCAAACCACATCAATGCTGAGGTCGGTGTTGTGGGTTCAACAGGAGTCTTTCGCTTCACTGTTGTTGGAAACTTCAATGAGATATTATGCCATGCATGCTGACAAGTCAGGGGGTCCTCCTAGACCTTTAGCCCAAATGCACAGATTTAGACAAGCCCTTGTCAACTGTGATTTGATCGACATGGGGTTTGTGAGATCTCGATTTACGTGGTCTAATCGATTCACTAAGGAGAAGCTTGATTGGGCCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009501 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 ko02026 ko04217 ko04910 ko04922 ko04931 map00500 map01100 map01110 map02026 map04217 map04910 map04922 map04931

Pfam Domains

Protein Families

Phosphorylase

Protein Analysis

105

Amino Acids

12.13

Weight (kDa)

9.88

Isoelectric Point (pI)

71.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29320
fragaria_vesca	FvH4_4g30370 FvH4_6g47260 FvH4_6g47260 FvH4_6g47260 FvH4_6g47260
malus_domestica	MD00G1156200.v1.1 MD09G1062600.v1.1 MD16G1063300.v1.1
prunus_persica	Prupe.1G283400_v2.0.a1 Prupe.1G283400_v2.0.a1 Prupe.3G257600_v2.0.a1
pyrus_communis	pycom111g05290
rosa_chinensis	RchiOBHm_Chr2g0166331 RchiOBHm_Chr4g0438671
rosa_laevigata	RLG00000006342 RLG00000021610
rosa_multiflora	Rmu_sc0000738.1_g000042 Rmu_sc0002505.1_g000002 Rmu_sc0007974.1_g000007
rosa_roxburghii	Rroxscaffold_2G00084990 Rroxscaffold_5G00379690 Rroxscaffold_7G00200130
rosa_rugosa	Rorug02G0522200 Rorug04G0312500 Rorug04G0312600 Rorug04G0312600
rosa_samantha	Rh2AG588200 Rh2BG600200 Rh2CG571100 Rh2DG610400 Rh4AG363000 Rh4BG374300 Rh4CG388400 Rh4DG368900
rosa_wichuraiana	Rw0G007140 Rw0G016690 Rw2G049020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	33
AgsI	TTSAA	2 cut(s)	104, 141
AjnI	CCWGG	1 cut(s)	14
AluBI	AGCT	1 cut(s)	301
AluI	AGCT	1 cut(s)	301
AlwI	GGATC	1 cut(s)	33
AoxI	GGCC	2 cut(s)	12, 309
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
Asp700I	GAANNNNTTC	1 cut(s)	60
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	3 cut(s)	45, 179, 309
AsuC2I	CCSGG	1 cut(s)	43
AsuII	TTCGAA	1 cut(s)	54
AvaII	GGWCC	2 cut(s)	45, 179
BbvCI	CCTCAGC	1 cut(s)	83
BciT130I	CCWGG	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	43
BfaI	CTAG	2 cut(s)	27, 186
BglII	AGATCT	1 cut(s)	260
Bme1390I	CCNGG	2 cut(s)	16, 43
Bme18I	GGWCC	2 cut(s)	45, 179
BmgT120I	GGNCC	3 cut(s)	45, 179, 309
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	2 cut(s)	16, 43
BmsI	GCATC	1 cut(s)	41
Bpu10I	CCTNAGC	1 cut(s)	83
Bpu14I	TTCGAA	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	43
Bsa29I	ATCGAT	1 cut(s)	283
BsaAI	YACGTR	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	16
BseCI	ATCGAT	1 cut(s)	283
BseMII	CTCAG	1 cut(s)	74
BshFI	GGCC	2 cut(s)	14, 311
BshVI	ATCGAT	1 cut(s)	283
BsiSI	CCGG	1 cut(s)	43
BsnI	GGCC	2 cut(s)	14, 311
Bsp119I	TTCGAA	1 cut(s)	54
Bsp143I	GATC	3 cut(s)	38, 240, 260
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	2 cut(s)	14, 311
BspCNI	CTCAG	1 cut(s)	75
BspDI	ATCGAT	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	180
BspPI	GGATC	1 cut(s)	33
BspT104I	TTCGAA	1 cut(s)	54
BssMI	GATC	3 cut(s)	38, 240, 260
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	2 cut(s)	126, 233
Bst6I	CTCTTC	1 cut(s)	28
BstBAI	YACGTR	1 cut(s)	273
BstBI	TTCGAA	1 cut(s)	54
BstC8I	GCNNGC	2 cut(s)	162, 313
BstDEI	CTNAG	2 cut(s)	83, 291
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	3 cut(s)	41, 243, 263
BstMBI	GATC	3 cut(s)	38, 240, 260
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	1 cut(s)	16
BstNSI	RCATGY	1 cut(s)	164
BstSCI	CCNGG	2 cut(s)	14, 41
BstX2I	RGATCY	2 cut(s)	38, 260
BstYI	RGATCY	2 cut(s)	38, 260
Bsu15I	ATCGAT	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	14, 311
BsuTUI	ATCGAT	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	122
Cac8I	GCNNGC	2 cut(s)	162, 313
CfoI	GCGC	1 cut(s)	32
Cfr13I	GGNCC	3 cut(s)	45, 179, 309
ClaI	ATCGAT	1 cut(s)	283
CpoI	CGGWCCG	1 cut(s)	45
CspI	CGGWCCG	1 cut(s)	45
CviAII	CATG	3 cut(s)	157, 161, 247
CviJI	RGCY	6 cut(s)	14, 19, 197, 221, 301, 311
CviKI_1	RGCY	6 cut(s)	14, 19, 197, 221, 301, 311
DdeI	CTNAG	2 cut(s)	83, 291
DpnI	GATC	3 cut(s)	40, 242, 262
DpnII	GATC	3 cut(s)	38, 240, 260
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
EciI	GGCGGA	1 cut(s)	37
Eco47I	GGWCC	2 cut(s)	45, 179
EcoO109I	RGGNCCY	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	14
EcoT22I	ATGCAT	1 cut(s)	162
FaeI	CATG	3 cut(s)	160, 164, 250
FaiI	YATR	4 cut(s)	153, 158, 162, 248
FatI	CATG	3 cut(s)	156, 160, 246
FspBI	CTAG	2 cut(s)	27, 186
GlaI	GCGC	1 cut(s)	31
HaeIII	GGCC	2 cut(s)	14, 311
HapII	CCGG	1 cut(s)	43
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	3 cut(s)	160, 164, 250
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	2 cut(s)	110, 285
HpaII	CCGG	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188III	TCNNGA	2 cut(s)	36, 264
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	2 cut(s)	126, 233
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	3 cut(s)	67, 160, 205
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	2 cut(s)	83, 291
HpySE526I	ACGT	1 cut(s)	272
Hsp92II	CATG	3 cut(s)	160, 164, 250
HspAI	GCGC	1 cut(s)	30
Kzo9I	GATC	3 cut(s)	38, 240, 260
LpnPI	CCDG	4 cut(s)	28, 56, 92, 159
LweI	GCATC	1 cut(s)	41
MaeI	CTAG	2 cut(s)	27, 186
MaeII	ACGT	1 cut(s)	272
MalI	GATC	3 cut(s)	40, 242, 262
MboI	GATC	3 cut(s)	38, 240, 260
MboII	GAAGA	1 cut(s)	15
MflI	RGATCY	2 cut(s)	38, 260
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	2 cut(s)	78, 192
Mph1103I	ATGCAT	1 cut(s)	162
MroXI	GAANNNNTTC	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	77
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	2 cut(s)	16, 43
MvaI	CCWGG	1 cut(s)	16
MwoI	GCNNNNNNNGC	1 cut(s)	161
NciI	CCSGG	1 cut(s)	43
NdeII	GATC	3 cut(s)	38, 240, 260
NlaIII	CATG	3 cut(s)	160, 164, 250
NlaIV	GGNNCC	1 cut(s)	180
NsiI	ATGCAT	1 cut(s)	162
NspI	RCATGY	1 cut(s)	164
NspV	TTCGAA	1 cut(s)	54
PaeI	GCATGC	1 cut(s)	164
PdmI	GAANNNNTTC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	285
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Ppu21I	YACGTR	1 cut(s)	273
PpuMI	RGGWCCY	1 cut(s)	179
Psp5II	RGGWCCY	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	3 cut(s)	45, 179, 309
PspPPI	RGGWCCY	1 cut(s)	179
PsuI	RGATCY	2 cut(s)	38, 260
RseI	CAYNNNNRTG	1 cut(s)	77
Rsr2I	CGGWCCG	1 cut(s)	45
RsrII	CGGWCCG	1 cut(s)	45
Sau3AI	GATC	3 cut(s)	38, 240, 260
Sau96I	GGNCC	3 cut(s)	45, 179, 309
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	2 cut(s)	16, 43
SetI	ASST	5 cut(s)	61, 89, 193, 275, 303
SfaNI	GCATC	1 cut(s)	41
SfuI	TTCGAA	1 cut(s)	54
SinI	GGWCC	2 cut(s)	45, 179
SmiMI	CAYNNNNRTG	1 cut(s)	77
SphI	GCATGC	1 cut(s)	164
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	2 cut(s)	27, 186
StyD4I	CCNGG	2 cut(s)	14, 41
TaaI	ACNGT	2 cut(s)	126, 233
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	5 cut(s)	35, 54, 243, 265, 283
TfiI	GAWTC	1 cut(s)	285
TscAI	CASTG	1 cut(s)	129
TspRI	CASTG	1 cut(s)	129
VpaK11BI	GGWCC	2 cut(s)	45, 179
XceI	RCATGY	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	60
XspI	CTAG	2 cut(s)	27, 186
Zsp2I	ATGCAT	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.