Rorug01G0442800

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004502
Physical Location & Seq
Forward (+)
54005206 .. 54008056
2851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0442800.1

Sequence Viewer

Length: 1452 bp
ATGAACTATATATCTCTGTTTGGTCCAAGGGTTTATCACAGGTTTTCGTGTTGTGTAGTCGTAGCAAGAAAACTAACCGATGGGTGTTTTGGTGGGAATAGAGGGGAGAATGGGGATGGGTCTATTGAGGAACCCATATCGGAAAGTTCAGATTTTGATCCAATTTTGAAGGAGTATGGTTTGTTAGAGAATGAGAGCCATCCCCGGGAGCAATTCTCGGCGAGACGGAGCTTTTTCGAGAATGTGAGGAGTTGTACTATTAGGATTCTTGAGATTTTACAGCAGGATGAACCCGGGTTTGATGCGAAAGCAGCTCTGGATGAGCTGGACATAAAGGTTTCGGGGATTATTGTGAGGGAAGTGTTGTTTGAGATATTGAAGATAGTGAGTTATGGGAATAAGATGCAGTGTGCGAAGCTGGGGTTTAAGTTTTTCGTGTGGTCTGGTCAGCAGGAGAATTACAAGCACACTGCGGACGCGTACCATTTGATGATGAAGATATTTGCAAACTGTGAGGAGTTTAAGGCAATGTGGAGGCTACTTGATGAGATGATTGAGAAAGGGTATCCAACTACGGCACGGACGTTTAATATTTTGATATGTACTTGTGGTCAGGCAGGCTTGGCTAGGAAAGTGGTGGAGAGGTTCATAAAGTCGAAGACGTTTAATTTTAGGCCATTTAAACACTCGTATAATGCAATTTTACTTTCCCTTCTTGTAGTGAAGCAGTACAAGTTGATCGAGTGGCTCTATCAACAGATGTTGGCAGAGGGTTACTTGCAGGATATTCTGACATATAATATTATGATGTGTGCAAAGTATAGATTGGGGAAGTTGGATCAATTTCACAGATTACTTGATGAAATGGGTAGGAGTGGATTCTCACCGGATTTTCATACTTACAACCTTCTTCTTCATGTACTTGGTAAGGGAGACAAACCACTTGCAGCTCTTAATCTTTTGAATCACATGAAGGAAGAAGGTTTCGAGCCAAGGGTTCTTCACTTCACAACATTGATAGATGGACTGAGCAGGGCTGGAAACATGGAGGCCTGCAAGTATTTTTTTGATGAGATGATAAAGTACGACTGCTTGCCTGATGTTGTATGTTATACTGTAATGATCACTGGATATATTGTGGCTGGGGAACTTGAGAAGGCTCTAGAGTTGTTCGATGTGATGGTCACTGATGGTCAGCTTCCAAATGTATTCACATACAATTCTATTATTCGTGGGCTTTGTATGGCAGGAAAATTTGAGGAAGCATGCTCCATGCTTAAAGAGATGGAATCCAGAGGTGTTAATCCAAATTTCACTGTATACAGCACACTAGTAAGTTACTTGCGAAATGCTGGAAAGCTTTCTGAAGCACATGAAGTAATAAGACAGATGGTAGAGAAGGGGCAGTATGCCCACCTGCTTTCCAATCTCAAGAGGCATAGAAGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005856 GO:0005874 GO:0005881 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0006996 GO:0007049 GO:0007112 GO:0007140 GO:0007154 GO:0007163 GO:0007165 GO:0007166 GO:0007224 GO:0007227 GO:0007228 GO:0007275 GO:0007276 GO:0007349 GO:0007584 GO:0008064 GO:0008092 GO:0008134 GO:0008144 GO:0008150 GO:0008152 GO:0008589 GO:0009524 GO:0009553 GO:0009558 GO:0009561 GO:0009605 GO:0009653 GO:0009791 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010639 GO:0010646 GO:0010647 GO:0014070 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019219 GO:0019222 GO:0019538 GO:0019894 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0030010 GO:0030030 GO:0030031 GO:0030554 GO:0030832 GO:0030833 GO:0030837 GO:0031156 GO:0031272 GO:0031323 GO:0031326 GO:0031333 GO:0031344 GO:0031667 GO:0032101 GO:0032104 GO:0032107 GO:0032271 GO:0032272 GO:0032501 GO:0032502 GO:0032504 GO:0032506 GO:0032535 GO:0032553 GO:0032555 GO:0032559 GO:0032956 GO:0032970 GO:0033043 GO:0033206 GO:0033273 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0040011 GO:0042221 GO:0042330 GO:0042493 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0043326 GO:0043327 GO:0043412 GO:0043900 GO:0044085 GO:0044087 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0045880 GO:0048229 GO:0048232 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048609 GO:0048646 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051128 GO:0051129 GO:0051171 GO:0051252 GO:0051301 GO:0051321 GO:0051493 GO:0051494 GO:0051593 GO:0051704 GO:0051716 GO:0060176 GO:0060255 GO:0060271 GO:0060491 GO:0061640 GO:0065007 GO:0065008 GO:0065009 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090066 GO:0097159 GO:0097367 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0110053 GO:0120031 GO:0120032 GO:0120035 GO:0120036 GO:0140013 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902410 GO:1902903 GO:1902904 GO:1903046 GO:1903047 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04341 map04341
Pfam Domains
Protein Families
Arm HEAT HEAT_2 Pkinase

Protein Analysis

483

Amino Acids

55.55

Weight (kDa)

6.89

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 160 - 203 2.3e-06 PPR repeat family
PPR_2 PF13041 262 - 309 1.4e-10 PPR repeat family
PPR_3 PF13812 284 - 340 9.9e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 332 - 378 4.2e-11 PPR repeat family
PPR_3 PF13812 356 - 411 7.8e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 363 - 395 7.1e-07 PPR repeat
PPR_2 PF13041 366 - 414 3.1e-16 PPR repeat family
PPR PF01535 369 - 398 9.8e-07 PPR repeat
PPR_long PF17177 388 - 466 2.1e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 398 - 430 5.7e-12 PPR repeat
PPR_2 PF13041 401 - 446 4.1e-14 PPR repeat family
PPR PF01535 404 - 434 1.2e-09 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1425
Acc36I ACCTGC 1 cut(s) 1425
AccI GTMKAC 1 cut(s) 1320
AccII CGCG 1 cut(s) 479
AciI CCGC 1 cut(s) 473
AclWI GGATC 2 cut(s) 152, 846
AcsI RAATTY 2 cut(s) 1253, 1309
AcuI CTGAAG 1 cut(s) 1386
AfaI GTAC 6 cut(s) 256, 482, 604, 731, 921, 1085
AfiI CCNNNNNNNGG 1 cut(s) 205
AflIII ACRYGT 1 cut(s) 477
AgsI TTSAA 3 cut(s) 169, 379, 964
AhlI ACTAGT 1 cut(s) 1330
AluBI AGCT 7 cut(s) 231, 314, 325, 418, 950, 1198, 1360
AluI AGCT 7 cut(s) 231, 314, 325, 418, 950, 1198, 1360
Alw26I GTCTC 2 cut(s) 217, 927
AlwI GGATC 2 cut(s) 152, 846
Ama87I CYCGRG 2 cut(s) 204, 293
AoxI GGCC 2 cut(s) 674, 1050
ApeKI GCWGC 2 cut(s) 311, 947
ApoI RAATTY 2 cut(s) 1253, 1309
Asp700I GAANNNNTTC 1 cut(s) 1360
AspS9I GGNCC 1 cut(s) 23
AsuC2I CCSGG 4 cut(s) 205, 206, 294, 295
AsuHPI GGTGA 1 cut(s) 876
AvaI CYCGRG 2 cut(s) 204, 293
AvaII GGWCC 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 665
BbvI GCAGC 2 cut(s) 323, 959
BccI CCATC 8 cut(s) 74, 110, 207, 1016, 1174, 1184, 1279, 1384
BceAI ACGGC 1 cut(s) 591
BciVI GTATCC 1 cut(s) 576
BclI TGATCA 1 cut(s) 1122
BcnI CCSGG 4 cut(s) 205, 206, 294, 295
BcoDI GTCTC 2 cut(s) 217, 927
BcuI ACTAGT 1 cut(s) 1330
BfaI CTAG 3 cut(s) 627, 1163, 1331
BfuAI ACCTGC 1 cut(s) 1425
BfuI GTATCC 1 cut(s) 576
BisI GCNGC 2 cut(s) 312, 948
BlsI GCNGC 2 cut(s) 313, 949
Bme1390I CCNGG 4 cut(s) 205, 206, 294, 295
Bme18I GGWCC 1 cut(s) 23
BmeT110I CYCGRG 2 cut(s) 204, 293
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 4 cut(s) 205, 206, 294, 295
BmsI GCATC 2 cut(s) 292, 393
BpiI GAAGAC 1 cut(s) 665
BplI GAGNNNNNCTC 2 cut(s) 200, 232
BpuEI CTTGAG 3 cut(s) 290, 1172, 1415
BpuMI CCSGG 4 cut(s) 205, 206, 294, 295
BsaBI GATNNNNATC 1 cut(s) 156
BsaJI CCNNGG 5 cut(s) 26, 203, 204, 293, 992
BsaWI WCCGGW 1 cut(s) 886
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 1132
Bse3DI GCAATG 1 cut(s) 534
Bse8I GATNNNNATC 1 cut(s) 156
BseDI CCNNGG 5 cut(s) 26, 203, 204, 293, 992
BseGI GGATG 4 cut(s) 121, 199, 292, 325
BseJI GATNNNNATC 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 1 cut(s) 1019
BseNI ACTGG 1 cut(s) 1132
BseRI GAGGAG 2 cut(s) 262, 530
BseXI GCAGC 2 cut(s) 323, 959
BseYI CCCAGC 2 cut(s) 418, 1142
Bsh1236I CGCG 1 cut(s) 479
BshFI GGCC 2 cut(s) 676, 1052
BsiHKCI CYCGRG 2 cut(s) 204, 293
BsiSI CCGG 3 cut(s) 205, 294, 887
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 2 cut(s) 217, 927
BsmBI CGTCTC 1 cut(s) 217
BsnI GGCC 2 cut(s) 676, 1052
BsoBI CYCGRG 2 cut(s) 204, 293
Bsp143I GATC 4 cut(s) 157, 738, 838, 1122
BspACI CCGC 1 cut(s) 473
BspANI GGCC 2 cut(s) 676, 1052
BspCNI CTCAG 1 cut(s) 1020
BspFNI CGCG 1 cut(s) 479
BspLI GGNNCC 1 cut(s) 132
BspMI ACCTGC 1 cut(s) 1425
BspPI GGATC 2 cut(s) 152, 846
BsrDI GCAATG 1 cut(s) 534
BsrI ACTGG 1 cut(s) 1132
BssECI CCNNGG 5 cut(s) 26, 203, 204, 293, 992
BssMI GATC 4 cut(s) 157, 738, 838, 1122
BssNAI GTATAC 1 cut(s) 1321
BssT1I CCWWGG 2 cut(s) 26, 992
Bst1107I GTATAC 1 cut(s) 1321
Bst4CI ACNGT 3 cut(s) 512, 1117, 1318
BstC8I GCNNGC 4 cut(s) 619, 1054, 1094, 1267
BstDEI CTNAG 1 cut(s) 1028
BstF5I GGATG 4 cut(s) 121, 199, 292, 325
BstFNI CGCG 1 cut(s) 479
BstKTI GATC 4 cut(s) 160, 741, 841, 1125
BstMAI GTCTC 2 cut(s) 217, 927
BstMBI GATC 4 cut(s) 157, 738, 838, 1122
BstMWI GCNNNNNNNGC 2 cut(s) 311, 623
BstNSI RCATGY 1 cut(s) 1269
BstSCI CCNGG 4 cut(s) 203, 204, 292, 293
BstUI CGCG 1 cut(s) 479
BstV1I GCAGC 2 cut(s) 323, 959
BstV2I GAAGAC 1 cut(s) 665
BstZ17I GTATAC 1 cut(s) 1321
BsuI GTATCC 1 cut(s) 576
BsuRI GGCC 2 cut(s) 676, 1052
BtsCI GGATG 4 cut(s) 121, 199, 292, 325
BtsI GCAGTG 2 cut(s) 413, 468
BtsIMutI CAGTG 5 cut(s) 413, 468, 1125, 1185, 1314
BveI ACCTGC 1 cut(s) 1425
Cac8I GCNNGC 4 cut(s) 619, 1054, 1094, 1267
Cfr13I GGNCC 1 cut(s) 23
Cfr9I CCCGGG 2 cut(s) 204, 293
CseI GACGC 1 cut(s) 485
Csp6I GTAC 6 cut(s) 255, 481, 603, 730, 920, 1084
CviAII CATG 6 cut(s) 917, 970, 1045, 1266, 1273, 1373
CviQI GTAC 6 cut(s) 255, 481, 603, 730, 920, 1084
DdeI CTNAG 1 cut(s) 1028
DpnI GATC 4 cut(s) 159, 740, 840, 1124
DpnII GATC 4 cut(s) 157, 738, 838, 1122
DraI TTTAAA 1 cut(s) 682
Eco130I CCWWGG 2 cut(s) 26, 992
Eco147I AGGCCT 1 cut(s) 1052
Eco47I GGWCC 1 cut(s) 23
Eco57I CTGAAG 1 cut(s) 1386
Eco88I CYCGRG 2 cut(s) 204, 293
EcoT14I CCWWGG 2 cut(s) 26, 992
ErhI CCWWGG 2 cut(s) 26, 992
Esp3I CGTCTC 1 cut(s) 217
FaeI CATG 6 cut(s) 920, 973, 1048, 1269, 1276, 1376
FatI CATG 6 cut(s) 916, 969, 1044, 1265, 1272, 1372
FbaI TGATCA 1 cut(s) 1122
FblI GTMKAC 1 cut(s) 1320
Fnu4HI GCNGC 2 cut(s) 312, 948
FokI GGATG 4 cut(s) 128, 186, 299, 332
Fsp4HI GCNGC 2 cut(s) 312, 948
FspBI CTAG 3 cut(s) 627, 1163, 1331
GluI GCNGC 2 cut(s) 312, 948
GsaI CCCAGC 2 cut(s) 422, 1146
HaeIII GGCC 2 cut(s) 676, 1052
HapII CCGG 3 cut(s) 205, 294, 887
HgaI GACGC 1 cut(s) 485
Hin1II CATG 6 cut(s) 920, 973, 1048, 1269, 1276, 1376
HindIII AAGCTT 1 cut(s) 1358
HinfI GANTC 4 cut(s) 265, 879, 964, 1289
HpaII CCGG 3 cut(s) 205, 294, 887
HphI GGTGA 1 cut(s) 876
Hpy166II GTNNAC 1 cut(s) 1321
Hpy188I TCNGA 4 cut(s) 142, 151, 792, 1366
Hpy188III TCNNGA 6 cut(s) 238, 269, 317, 1163, 1293, 1432
Hpy8I GTNNAC 1 cut(s) 1321
HpyAV CCTTC 7 cut(s) 163, 722, 917, 967, 974, 1150, 1393
HpyCH4III ACNGT 3 cut(s) 512, 1117, 1318
HpyCH4IV ACGT 2 cut(s) 584, 662
HpyCH4V TGCA 7 cut(s) 406, 506, 698, 781, 815, 947, 1056
HpyF10VI GCNNNNNNNGC 2 cut(s) 311, 623
HpyF3I CTNAG 1 cut(s) 1028
HpySE526I ACGT 2 cut(s) 584, 662
Hsp92II CATG 6 cut(s) 920, 973, 1048, 1269, 1276, 1376
Ksp22I TGATCA 1 cut(s) 1122
Kzo9I GATC 4 cut(s) 157, 738, 838, 1122
LmnI GCTCC 3 cut(s) 208, 228, 1274
Lsp1109I GCAGC 2 cut(s) 323, 959
LweI GCATC 2 cut(s) 292, 393
MaeI CTAG 3 cut(s) 627, 1163, 1331
MaeII ACGT 2 cut(s) 584, 662
MaeIII GTNAC 3 cut(s) 773, 1183, 1337
MalI GATC 4 cut(s) 159, 740, 840, 1124
MboI GATC 4 cut(s) 157, 738, 838, 1122
MboII GAAGA 7 cut(s) 391, 508, 670, 902, 905, 989, 992
MluCI AATT 9 cut(s) 162, 212, 457, 667, 699, 842, 1219, 1253, 1309
MluI ACGCGT 1 cut(s) 477
MmeI TCCRAC 2 cut(s) 593, 816
MroXI GAANNNNTTC 1 cut(s) 1360
MseI TTAA 8 cut(s) 426, 522, 588, 666, 681, 954, 1278, 1302
MspI CCGG 3 cut(s) 205, 294, 887
MspR9I CCNGG 4 cut(s) 205, 206, 294, 295
MvnI CGCG 1 cut(s) 479
MwoI GCNNNNNNNGC 2 cut(s) 311, 623
NciI CCSGG 4 cut(s) 205, 206, 294, 295
NdeII GATC 4 cut(s) 157, 738, 838, 1122
NlaIII CATG 6 cut(s) 920, 973, 1048, 1269, 1276, 1376
NlaIV GGNNCC 1 cut(s) 132
NmeAIII GCCGAG 1 cut(s) 197
NmuCI GTSAC 1 cut(s) 1183
NspI RCATGY 1 cut(s) 1269
PaeI GCATGC 1 cut(s) 1269
PaqCI CACCTGC 1 cut(s) 1425
PceI AGGCCT 1 cut(s) 1052
PcsI WCGNNNNNNNCGW 1 cut(s) 581
PdmI GAANNNNTTC 1 cut(s) 1360
PfeI GAWTC 4 cut(s) 265, 879, 964, 1289
PkrI GCNGC 2 cut(s) 313, 949
PspFI CCCAGC 2 cut(s) 418, 1142
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 23
RsaI GTAC 6 cut(s) 256, 482, 604, 731, 921, 1085
RsaNI GTAC 6 cut(s) 255, 481, 603, 730, 920, 1084
SaqAI TTAA 8 cut(s) 426, 522, 588, 666, 681, 954, 1278, 1302
SatI GCNGC 2 cut(s) 312, 948
Sau3AI GATC 4 cut(s) 157, 738, 838, 1122
Sau96I GGNCC 1 cut(s) 23
ScrFI CCNGG 4 cut(s) 205, 206, 294, 295
SfaNI GCATC 2 cut(s) 292, 393
SinI GGWCC 1 cut(s) 23
SmaI CCCGGG 2 cut(s) 206, 295
SmlI CTYRAG 3 cut(s) 269, 1151, 1430
SmoI CTYRAG 3 cut(s) 269, 1151, 1430
SpeI ACTAGT 1 cut(s) 1330
SphI GCATGC 1 cut(s) 1269
Sse9I AATT 9 cut(s) 162, 212, 457, 667, 699, 842, 1219, 1253, 1309
SseBI AGGCCT 1 cut(s) 1052
SsiI CCGC 1 cut(s) 473
SspI AATATT 2 cut(s) 592, 802
SspMI CTAG 3 cut(s) 627, 1163, 1331
StuI AGGCCT 1 cut(s) 1052
StyD4I CCNGG 4 cut(s) 203, 204, 292, 293
StyI CCWWGG 2 cut(s) 26, 992
TaaI ACNGT 3 cut(s) 512, 1117, 1318
TaiI ACGT 2 cut(s) 587, 665
TaqI TCGA 5 cut(s) 237, 656, 741, 987, 1173
TasI AATT 9 cut(s) 162, 212, 457, 667, 699, 842, 1219, 1253, 1309
TatI WGTACW 4 cut(s) 254, 602, 729, 919
TfiI GAWTC 4 cut(s) 265, 879, 964, 1289
Tru1I TTAA 8 cut(s) 426, 522, 588, 666, 681, 954, 1278, 1302
Tru9I TTAA 8 cut(s) 426, 522, 588, 666, 681, 954, 1278, 1302
TscAI CASTG 5 cut(s) 413, 475, 1132, 1192, 1321
TseFI GTSAC 1 cut(s) 1183
TseI GCWGC 2 cut(s) 311, 947
Tsp45I GTSAC 1 cut(s) 1183
TspDTI ATGAA 9 cut(s) 17, 303, 509, 637, 876, 884, 905, 986, 1389
TspGWI ACGGA 2 cut(s) 241, 595
TspMI CCCGGG 2 cut(s) 204, 293
TspRI CASTG 5 cut(s) 413, 475, 1132, 1192, 1321
VpaK11BI GGWCC 1 cut(s) 23
XapI RAATTY 2 cut(s) 1253, 1309
XbaI TCTAGA 1 cut(s) 1162
XceI RCATGY 1 cut(s) 1269
XmaI CCCGGG 2 cut(s) 204, 293
XmiI GTMKAC 1 cut(s) 1320
XmnI GAANNNNTTC 1 cut(s) 1360
XspI CTAG 3 cut(s) 627, 1163, 1331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.