Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004502

Physical Location & Seq

Genomic Coordinates Reverse (-)

54009291 .. 54010461

Gene Structure 1171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0442900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCTCAGAAGGTGGTGTTGAAGGTCTTGACCATGACTGATGAGAAAACAAAGCAGAAAGCCATTGAAGCTGCGGCAGATATCTTTGGGATTGATTCGATCGCGGCAGATCTGAAGGACCAGAAGCTCACAGTGGTGGGGATGATGGACACAGTTGCAGTGGTGAAGAAGCTGAAGAAGGTAGGTAAAGTCGACATAATATCTGTTGGTCCAGCCAAGGAAGAGAAGAAAGAAGAAAAGAAAGATGAGAAAAAAGACGAAAAGAAAGAGGGCGAGAAAAAAGAAGAAAAGAAGGAAGACAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005856 GO:0005874 GO:0005881 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0006996 GO:0007049 GO:0007112 GO:0007140 GO:0007154 GO:0007163 GO:0007165 GO:0007166 GO:0007224 GO:0007227 GO:0007228 GO:0007275 GO:0007276 GO:0007349 GO:0007584 GO:0008064 GO:0008092 GO:0008134 GO:0008144 GO:0008150 GO:0008152 GO:0008589 GO:0009524 GO:0009553 GO:0009558 GO:0009561 GO:0009605 GO:0009653 GO:0009791 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010639 GO:0010646 GO:0010647 GO:0014070 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019219 GO:0019222 GO:0019538 GO:0019894 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0030010 GO:0030030 GO:0030031 GO:0030554 GO:0030832 GO:0030833 GO:0030837 GO:0031156 GO:0031272 GO:0031323 GO:0031326 GO:0031333 GO:0031344 GO:0031667 GO:0032101 GO:0032104 GO:0032107 GO:0032271 GO:0032272 GO:0032501 GO:0032502 GO:0032504 GO:0032506 GO:0032535 GO:0032553 GO:0032555 GO:0032559 GO:0032956 GO:0032970 GO:0033043 GO:0033206 GO:0033273 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0040011 GO:0042221 GO:0042330 GO:0042493 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0043326 GO:0043327 GO:0043412 GO:0043900 GO:0044085 GO:0044087 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0045880 GO:0048229 GO:0048232 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048609 GO:0048646 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051128 GO:0051129 GO:0051171 GO:0051252 GO:0051301 GO:0051321 GO:0051493 GO:0051494 GO:0051593 GO:0051704 GO:0051716 GO:0060176 GO:0060255 GO:0060271 GO:0060491 GO:0061640 GO:0065007 GO:0065008 GO:0065009 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090066 GO:0097159 GO:0097367 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0110053 GO:0120031 GO:0120032 GO:0120035 GO:0120036 GO:0140013 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902410 GO:1902903 GO:1902904 GO:1903046 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04341 map04341

Pfam Domains

Protein Families

Arm HEAT HEAT_2 Pkinase

Protein Analysis

102

Amino Acids

11.4

Weight (kDa)

9.1

Isoelectric Point (pI)

14.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50240 AT1G50240
fragaria_vesca	FvH4_7g33760 FvH4_7g33760 FvH4_7g33760 FvH4_7g33760 FvH4_7g33760 FvH4_7g33760
malus_domestica	MD01G1234000.v1.1 MD07G1306200.v1.1
prunus_persica	Prupe.2G324200_v2.0.a1 Prupe.2G324200_v2.0.a1 Prupe.2G324200_v2.0.a1 Prupe.3G137600_v2.0.a1 Prupe.3G137600_v2.0.a1 Prupe.3G137600_v2.0.a1 Prupe.3G137600_v2.0.a1 Prupe.3G137600_v2.0.a1
pyrus_communis	pycom01g24230 pycom01g24240
rosa_chinensis	RchiOBHm_Chr1g0383891
rosa_laevigata	RLG00000026088
rosa_multiflora	Rmu_sc0005139.1_g000029 Rmu_sc0012471.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277170
rosa_rugosa	Rorug01G0442800 Rorug01G0442900
rosa_samantha	Rh1AG468800 Rh1BG426500 Rh1CG439300 Rh1DG459300
rosa_wichuraiana	Rw1G040360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	192
AccII	CGCG	1 cut(s)	104
AciI	CCGC	2 cut(s)	74, 104
AcuI	CTGAAG	2 cut(s)	134, 194
AgsI	TTSAA	2 cut(s)	22, 68
AleI	CACNNNNGTG	1 cut(s)	134
AluBI	AGCT	3 cut(s)	71, 127, 172
AluI	AGCT	3 cut(s)	71, 127, 172
ApeKI	GCWGC	1 cut(s)	71
AspS9I	GGNCC	2 cut(s)	118, 209
AsuHPI	GGTGA	1 cut(s)	175
AvaII	GGWCC	2 cut(s)	118, 209
BbsI	GAAGAC	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	1 cut(s)	139
BglII	AGATCT	1 cut(s)	109
BisI	GCNGC	3 cut(s)	72, 75, 105
BlsI	GCNGC	3 cut(s)	73, 76, 106
Bme18I	GGWCC	2 cut(s)	118, 209
BmgT120I	GGNCC	2 cut(s)	118, 209
BpiI	GAAGAC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	104
Bsh1285I	CGRYCG	1 cut(s)	102
BsiEI	CGRYCG	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	99, 109
BspACI	CCGC	2 cut(s)	74, 104
BspCNI	CTCAG	1 cut(s)	19
BspFNI	CGCG	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	2 cut(s)	99, 109
BssT1I	CCWWGG	1 cut(s)	216
Bst4CI	ACNGT	2 cut(s)	133, 154
Bst6I	CTCTTC	1 cut(s)	216
BstDEI	CTNAG	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	147
BstFNI	CGCG	1 cut(s)	104
BstKTI	GATC	2 cut(s)	102, 112
BstMBI	GATC	2 cut(s)	99, 109
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstUI	CGCG	1 cut(s)	104
BstV1I	GCAGC	1 cut(s)	58
BstV2I	GAAGAC	1 cut(s)	303
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	147
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	2 cut(s)	138, 165
Cfr13I	GGNCC	2 cut(s)	118, 209
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	6 cut(s)	5, 62, 71, 127, 172, 215
CviKI_1	RGCY	6 cut(s)	5, 62, 71, 127, 172, 215
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	2 cut(s)	101, 111
DpnII	GATC	2 cut(s)	99, 109
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	216
Eco32I	GATATC	1 cut(s)	82
Eco47I	GGWCC	2 cut(s)	118, 209
Eco57I	CTGAAG	2 cut(s)	134, 194
EcoRV	GATATC	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	1 cut(s)	37
FaiI	YATR	2 cut(s)	35, 197
FatI	CATG	1 cut(s)	33
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	3 cut(s)	72, 75, 105
FokI	GGATG	1 cut(s)	154
Fsp4HI	GCNGC	3 cut(s)	72, 75, 105
GluI	GCNGC	3 cut(s)	72, 75, 105
Hin1II	CATG	1 cut(s)	37
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	1 cut(s)	95
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	9, 114
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	5 cut(s)	4, 16, 109, 172, 286
HpyCH4III	ACNGT	2 cut(s)	133, 154
HpyCH4V	TGCA	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	99, 109
LpnPI	CCDG	2 cut(s)	134, 225
Lsp1109I	GCAGC	1 cut(s)	58
MalI	GATC	2 cut(s)	101, 111
MboI	GATC	2 cut(s)	99, 109
MboII	GAAGA	7 cut(s)	178, 187, 233, 238, 245, 296, 308
MflI	RGATCY	1 cut(s)	109
MnlI	CCTC	1 cut(s)	262
MslI	CAYNNNNRTG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	2 cut(s)	99, 109
NlaIII	CATG	1 cut(s)	37
OliI	CACNNNNGTG	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	3 cut(s)	73, 76, 106
Ple19I	CGATCG	1 cut(s)	102
PspPI	GGNCC	2 cut(s)	118, 209
PsuI	RGATCY	1 cut(s)	109
PvuI	CGATCG	1 cut(s)	102
RseI	CAYNNNNRTG	1 cut(s)	134
SalI	GTCGAC	1 cut(s)	191
SatI	GCNGC	3 cut(s)	72, 75, 105
Sau3AI	GATC	2 cut(s)	99, 109
Sau96I	GGNCC	2 cut(s)	118, 209
SetI	ASST	7 cut(s)	15, 27, 73, 129, 174, 183, 187
SgeI	CNNG	7 cut(s)	40, 46, 115, 133, 224, 229, 286
SinI	GGWCC	2 cut(s)	118, 209
SmiMI	CAYNNNNRTG	1 cut(s)	134
SsiI	CCGC	2 cut(s)	74, 104
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	2 cut(s)	133, 154
TaqI	TCGA	2 cut(s)	98, 192
TauI	GCSGC	2 cut(s)	77, 107
TfiI	GAWTC	1 cut(s)	95
TscAI	CASTG	2 cut(s)	138, 165
TseI	GCWGC	1 cut(s)	71
TspRI	CASTG	2 cut(s)	138, 165
VpaK11BI	GGWCC	2 cut(s)	118, 209
XmiI	GTMKAC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.