Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004209

Physical Location & Seq

Genomic Coordinates Forward (+)

48315834 .. 48316719

Gene Structure 886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0307300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAAGGCCACTTCGAATGGATTATTTCAGGGCGAAAATCCACTTGATTACACTCTTCCCTTACTCATCGTCCAGATCATCTTGGTCGTGGTGTTCACCAGGTTTCTTGCATATCTTCTAAAACCTCTCCTTCAACCCCGAGTCATAGCCGAAGTTATAGGCCCTCCGCATTCAGGAGGAGCAAGACCTTTCTACACTAGGCTAGATACAGTAGCCAACATTAGGCTCTATTTCTTCTTCTTCCTCTTCGGCCTCGAGCTCGACATTGACGCCATCCGCAGCACCGGAAAGAAGTCCCTCAGCATCGCCCTCTGCGAGATCACCCTCCCTTTCGTCCTCGGCATCGGCACCTCCGAATCCCTACGCGCCACCGTCTCAAAAGGCGTGAAACAAGGCCCCTTCATGGTCTTCAACGGTGTCGCCCTCTCCATCACTGCCTTCCCCGTCCTGGCCCGCATCCTCGTTGAGCTCAAGCTCCTCACCACCGATGTCGGCTGCATTGCCATGTCCGTCGCCGCCGTCAACGACGCCGCCGCCTGGATCCTTCTCGCCCTCGTCATCGCCCTCACCGGCAACAACACCTCACCGCTTGTCTCTGTCTGGGTCCTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0032787 GO:0034641 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046394 GO:0046983 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

204

Amino Acids

22.03

Weight (kDa)

9.0

Isoelectric Point (pI)

28.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	19 - 201	2.1e-16	Sodium/hydrogen exchanger, transmembrane

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03667 AT2G03667
fragaria_vesca	FvH4_4g29880 FvH4_4g29880 FvH4_4g29880 FvH4_4g29880 FvH4_4g29880 FvH4_4g29880 FvH4_4g29880 FvH4_4g29880
malus_domestica	MD13G1061700.v1.1 MD16G1060200.v1.1
prunus_persica	Prupe.1G288300_v2.0.a1 Prupe.1G288300_v2.0.a1 Prupe.1G288300_v2.0.a1 Prupe.1G288300_v2.0.a1
pyrus_communis	pycom16g05240
rosa_chinensis	RchiOBHm_Chr4g0438141
rosa_laevigata	RLG00000006385
rosa_multiflora	Rmu_sc0004728.1_g000004 Rmu_sc0020161.1_g000004
rosa_roxburghii	Rroxscaffold_5G00379270
rosa_rugosa	Rorug04G0307300 Rorug04G0307400 Rorug04G0307500 Rorug04G0307600 Rorug04G0307700
rosa_samantha	Rh4AG358800 Rh4BG369700 Rh4CG383800 Rh4DG364600
rosa_wichuraiana	Rw0G006330 Rw0G016270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	347
AccII	CGCG	1 cut(s)	366
AciI	CCGC	7 cut(s)	167, 277, 454, 516, 531, 534, 587
AclWI	GGATC	2 cut(s)	535, 548
AcyI	GRCGYC	2 cut(s)	270, 528
AfiI	CCNNNNNNNGG	5 cut(s)	173, 222, 403, 448, 537
AgsI	TTSAA	2 cut(s)	134, 412
AjnI	CCWGG	3 cut(s)	98, 447, 536
AluBI	AGCT	3 cut(s)	259, 469, 475
AluI	AGCT	3 cut(s)	259, 469, 475
Alw21I	GWGCWC	2 cut(s)	261, 471
Alw26I	GTCTC	2 cut(s)	379, 598
AlwI	GGATC	2 cut(s)	535, 548
Ama87I	CYCGRG	2 cut(s)	138, 254
AoxI	GGCC	5 cut(s)	6, 160, 250, 394, 450
ApeKI	GCWGC	2 cut(s)	279, 495
AspLEI	GCGC	1 cut(s)	368
AspS9I	GGNCC	4 cut(s)	161, 395, 451, 604
AsuHPI	GGTGA	5 cut(s)	88, 313, 472, 559, 576
AsuII	TTCGAA	1 cut(s)	14
AvaI	CYCGRG	2 cut(s)	138, 254
AvaII	GGWCC	1 cut(s)	604
BamHI	GGATCC	1 cut(s)	540
BanI	GGYRCC	1 cut(s)	347
BanII	GRGCYC	2 cut(s)	261, 471
BbsI	GAAGAC	1 cut(s)	400
Bbv12I	GWGCWC	2 cut(s)	261, 471
BbvCI	CCTCAGC	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	291, 482
BccI	CCATC	2 cut(s)	281, 437
BceAI	ACGGC	1 cut(s)	503
BciT130I	CCWGG	3 cut(s)	100, 449, 538
BcoDI	GTCTC	2 cut(s)	379, 598
BfaI	CTAG	2 cut(s)	198, 203
BisI	GCNGC	5 cut(s)	280, 496, 516, 531, 534
BlsI	GCNGC	5 cut(s)	281, 497, 517, 532, 535
Bme1390I	CCNGG	3 cut(s)	100, 449, 538
Bme18I	GGWCC	1 cut(s)	604
BmeT110I	CYCGRG	2 cut(s)	138, 254
BmgT120I	GGNCC	4 cut(s)	161, 395, 451, 604
BmiI	GGNNCC	4 cut(s)	349, 397, 542, 605
BmrFI	CCNGG	3 cut(s)	100, 449, 538
BmsI	GCATC	3 cut(s)	312, 351, 465
BpiI	GAAGAC	1 cut(s)	400
Bpu10I	CCTNAGC	1 cut(s)	299
Bpu14I	TTCGAA	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	455
BsaHI	GRCGYC	2 cut(s)	270, 528
BsaJI	CCNNGG	1 cut(s)	337
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	5 cut(s)	173, 222, 403, 448, 537
Bse118I	RCCGGY	1 cut(s)	569
Bse3DI	GCAATG	1 cut(s)	498
BseBI	CCWGG	3 cut(s)	100, 449, 538
BseDI	CCNNGG	1 cut(s)	337
BseGI	GGATG	2 cut(s)	273, 456
BseLI	CCNNNNNNNGG	5 cut(s)	173, 222, 403, 448, 537
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	1 cut(s)	313
BseRI	GAGGAG	3 cut(s)	192, 467, 599
BseXI	GCAGC	2 cut(s)	291, 482
Bsh1236I	CGCG	1 cut(s)	366
BshFI	GGCC	5 cut(s)	8, 162, 252, 396, 452
BshNI	GGYRCC	1 cut(s)	347
BsiHKAI	GWGCWC	2 cut(s)	261, 471
BsiHKCI	CYCGRG	2 cut(s)	138, 254
BsiSI	CCGG	2 cut(s)	285, 570
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	5 cut(s)	173, 222, 403, 448, 537
BsmAI	GTCTC	2 cut(s)	379, 598
BsmBI	CGTCTC	1 cut(s)	379
BsmFI	GGGAC	1 cut(s)	280
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	5 cut(s)	8, 162, 252, 396, 452
BsoBI	CYCGRG	2 cut(s)	138, 254
Bsp119I	TTCGAA	1 cut(s)	14
Bsp1286I	GDGCHC	2 cut(s)	261, 471
Bsp143I	GATC	3 cut(s)	75, 318, 540
BspACI	CCGC	7 cut(s)	167, 277, 454, 516, 531, 534, 587
BspANI	GGCC	5 cut(s)	8, 162, 252, 396, 452
BspCNI	CTCAG	1 cut(s)	312
BspFNI	CGCG	1 cut(s)	366
BspLI	GGNNCC	4 cut(s)	349, 397, 542, 605
BspPI	GGATC	2 cut(s)	535, 548
BspT104I	TTCGAA	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	498
BsrFI	RCCGGY	1 cut(s)	569
BssAI	RCCGGY	1 cut(s)	569
BssECI	CCNNGG	1 cut(s)	337
BssMI	GATC	3 cut(s)	75, 318, 540
BssNI	GRCGYC	2 cut(s)	270, 528
Bst2UI	CCWGG	3 cut(s)	100, 449, 538
Bst4CI	ACNGT	3 cut(s)	211, 373, 416
Bst6I	CTCTTC	2 cut(s)	60, 251
BstACI	GRCGYC	2 cut(s)	270, 528
BstBI	TTCGAA	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	454
BstDEI	CTNAG	1 cut(s)	299
BstF5I	GGATG	2 cut(s)	273, 456
BstFNI	CGCG	1 cut(s)	366
BstHHI	GCGC	1 cut(s)	368
BstKTI	GATC	3 cut(s)	78, 321, 543
BstMAI	GTCTC	2 cut(s)	379, 598
BstMBI	GATC	3 cut(s)	75, 318, 540
BstNI	CCWGG	3 cut(s)	100, 449, 538
BstSCI	CCNGG	3 cut(s)	98, 447, 536
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	2 cut(s)	291, 482
BstV2I	GAAGAC	1 cut(s)	400
BstX2I	RGATCY	1 cut(s)	540
BstYI	RGATCY	1 cut(s)	540
BsuRI	GGCC	5 cut(s)	8, 162, 252, 396, 452
BtgZI	GCGATG	2 cut(s)	289, 544
BtsCI	GGATG	2 cut(s)	273, 456
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	1 cut(s)	454
CfoI	GCGC	1 cut(s)	368
Cfr10I	RCCGGY	1 cut(s)	569
Cfr13I	GGNCC	4 cut(s)	161, 395, 451, 604
CseI	GACGC	2 cut(s)	278, 536
CsiI	ACCWGGT	1 cut(s)	98
CviAII	CATG	2 cut(s)	403, 505
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	3 cut(s)	77, 320, 542
DpnII	GATC	3 cut(s)	75, 318, 540
Eam1104I	CTCTTC	2 cut(s)	60, 251
EarI	CTCTTC	2 cut(s)	60, 251
Ecl136II	GAGCTC	2 cut(s)	259, 469
Eco24I	GRGCYC	2 cut(s)	261, 471
Eco47I	GGWCC	1 cut(s)	604
Eco53kI	GAGCTC	2 cut(s)	259, 469
Eco88I	CYCGRG	2 cut(s)	138, 254
EcoICRI	GAGCTC	2 cut(s)	259, 469
EcoO109I	RGGNCCY	3 cut(s)	161, 395, 604
EcoRII	CCWGG	3 cut(s)	98, 447, 536
EcoT38I	GRGCYC	2 cut(s)	261, 471
Esp3I	CGTCTC	1 cut(s)	379
FaeI	CATG	2 cut(s)	406, 508
FaiI	YATR	5 cut(s)	112, 146, 158, 404, 506
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	2 cut(s)	402, 504
FauI	CCCGC	1 cut(s)	461
Fnu4HI	GCNGC	5 cut(s)	280, 496, 516, 531, 534
FokI	GGATG	2 cut(s)	260, 443
FriOI	GRGCYC	2 cut(s)	261, 471
Fsp4HI	GCNGC	5 cut(s)	280, 496, 516, 531, 534
FspBI	CTAG	2 cut(s)	198, 203
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	5 cut(s)	280, 496, 516, 531, 534
HaeIII	GGCC	5 cut(s)	8, 162, 252, 396, 452
HapII	CCGG	2 cut(s)	285, 570
HgaI	GACGC	2 cut(s)	278, 536
HhaI	GCGC	1 cut(s)	368
Hin1I	GRCGYC	2 cut(s)	270, 528
Hin1II	CATG	2 cut(s)	406, 508
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HinfI	GANTC	2 cut(s)	141, 356
HpaII	CCGG	2 cut(s)	285, 570
HphI	GGTGA	5 cut(s)	88, 313, 472, 559, 576
Hpy166II	GTNNAC	2 cut(s)	96, 523
Hpy188I	TCNGA	2 cut(s)	355, 614
Hpy188III	TCNNGA	2 cut(s)	73, 174
Hpy8I	GTNNAC	2 cut(s)	96, 523
Hpy99I	CGWCG	2 cut(s)	515, 530
HpyAV	CCTTC	4 cut(s)	140, 409, 448, 554
HpyCH4III	ACNGT	3 cut(s)	211, 373, 416
HpyCH4V	TGCA	2 cut(s)	110, 498
HpyF3I	CTNAG	1 cut(s)	299
Hsp92I	GRCGYC	2 cut(s)	270, 528
Hsp92II	CATG	2 cut(s)	406, 508
HspAI	GCGC	1 cut(s)	366
Kzo9I	GATC	3 cut(s)	75, 318, 540
LmnI	GCTCC	2 cut(s)	179, 480
Lsp1109I	GCAGC	2 cut(s)	291, 482
LweI	GCATC	3 cut(s)	312, 351, 465
MabI	ACCWGGT	1 cut(s)	98
MaeI	CTAG	2 cut(s)	198, 203
MalI	GATC	3 cut(s)	77, 320, 542
MboI	GATC	3 cut(s)	75, 318, 540
MboII	GAAGA	7 cut(s)	47, 107, 226, 229, 232, 238, 400
MflI	RGATCY	1 cut(s)	540
MhlI	GDGCHC	2 cut(s)	261, 471
MlyI	GAGTC	1 cut(s)	150
MslI	CAYNNNNRTG	1 cut(s)	503
MspI	CCGG	2 cut(s)	285, 570
MspR9I	CCNGG	3 cut(s)	100, 449, 538
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	3 cut(s)	100, 449, 538
MvnI	CGCG	1 cut(s)	366
NdeII	GATC	3 cut(s)	75, 318, 540
NlaIII	CATG	2 cut(s)	406, 508
NlaIV	GGNNCC	4 cut(s)	349, 397, 542, 605
NmeAIII	GCCGAG	1 cut(s)	318
NspV	TTCGAA	1 cut(s)	14
PaeR7I	CTCGAG	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	2 cut(s)	312, 351
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	356
PkrI	GCNGC	5 cut(s)	281, 497, 517, 532, 535
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PpuMI	RGGWCCY	1 cut(s)	604
Psp124BI	GAGCTC	2 cut(s)	261, 471
Psp5II	RGGWCCY	1 cut(s)	604
Psp6I	CCWGG	3 cut(s)	98, 447, 536
PspGI	CCWGG	3 cut(s)	98, 447, 536
PspN4I	GGNNCC	4 cut(s)	349, 397, 542, 605
PspPI	GGNCC	4 cut(s)	161, 395, 451, 604
PspPPI	RGGWCCY	1 cut(s)	604
PspXI	VCTCGAGB	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	540
RseI	CAYNNNNRTG	1 cut(s)	503
SacI	GAGCTC	2 cut(s)	261, 471
SatI	GCNGC	5 cut(s)	280, 496, 516, 531, 534
Sau3AI	GATC	3 cut(s)	75, 318, 540
Sau96I	GGNCC	4 cut(s)	161, 395, 451, 604
SchI	GAGTC	1 cut(s)	150
ScrFI	CCNGG	3 cut(s)	100, 449, 538
SduI	GDGCHC	2 cut(s)	261, 471
SetI	ASST	8 cut(s)	104, 127, 190, 261, 353, 471, 477, 584
SexAI	ACCWGGT	1 cut(s)	98
SfaNI	GCATC	3 cut(s)	312, 351, 465
Sfr274I	CTCGAG	1 cut(s)	254
SfuI	TTCGAA	1 cut(s)	14
SinI	GGWCC	1 cut(s)	604
SlaI	CTCGAG	1 cut(s)	254
SmiMI	CAYNNNNRTG	1 cut(s)	503
SmlI	CTYRAG	2 cut(s)	254, 470
SmoI	CTYRAG	2 cut(s)	254, 470
SsiI	CCGC	7 cut(s)	167, 277, 454, 516, 531, 534, 587
SspMI	CTAG	2 cut(s)	198, 203
SstI	GAGCTC	2 cut(s)	261, 471
StyD4I	CCNGG	3 cut(s)	98, 447, 536
TaaI	ACNGT	3 cut(s)	211, 373, 416
TaqI	TCGA	3 cut(s)	14, 255, 261
TauI	GCSGC	3 cut(s)	518, 533, 536
TfiI	GAWTC	1 cut(s)	356
TscAI	CASTG	1 cut(s)	439
TseI	GCWGC	2 cut(s)	279, 495
TspDTI	ATGAA	2 cut(s)	17, 391
TspGWI	ACGGA	1 cut(s)	499
TspRI	CASTG	1 cut(s)	439
VpaK11BI	GGWCC	1 cut(s)	604
XhoI	CTCGAG	1 cut(s)	254
XspI	CTAG	2 cut(s)	198, 203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.