Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004209

Physical Location & Seq

Genomic Coordinates Forward (+)

48316888 .. 48320700

Gene Structure 3813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0307400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCATTGTTCACCACCTTCATTACCACACCACTAGTGATGGCAGTGTACAAGCCAACACGAAAGGGAGCCCCTTACAAACTACACACTATTTTCCGCAAAAGCCCGGACACAAAGCTTCGAATATTGGCATGCTTCCACACCACCTGCAACATCCCCACCATGATCAACCTCATCGAGTCGTCCCGCGGCACCCGCAAGCGTGGACGACTCACCGTCCATGTCATGCACCTCATAGAGCTCTCGGAGCGGTCCTCTGTGACCTCCATGGTCCACAAAGCCAGCTACAATGGCCTCCCATTTTGGAACAAGAAGAGTGATAGAAATGACCAAATGGTTATTGCTTTCAAGGCCTACGAGCAGCTCAGCAGCGTTAAGATTCGGCCACCCACCGCCATCTCTTCTTTAAACGACATGCACGAGGACATATGCGCCTGTGCGCACCAAAAAACCGCGGCAATGATTTTGTTGCTGTTTCACAAGCATCAGAAGCTGGACGGCACCATGGAGTCGGTGGGACACTCATTTCAAGTGGTGAACGAGCGTGTGCTCCAACATGCACCTTGTTCGGTTGGGATTCTAGTTGATAGAGGACTCGGTGGCACCATGCAAGTCTCAGCCAGCGATGTGTCATATACGGCGGTGGTGGCGTTCTTCAGAGGAAGGGATGACCGGGAGGCACTGGCCTATAGTATGAGACTGGCTGAACATACTGGGATTGCATTGACTATTTTTAGATTCATTGCTCCACAAGGGAAGACATTGAGATTTGGAGCGAAATTAGTTGGGATAACAGCTGACAACAAGAAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0032787 GO:0034641 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046394 GO:0046983 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

271

Amino Acids

30.3

Weight (kDa)

9.86

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHX17_2nd	PF23256	68 - 208	2.9e-47	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	214 - 251	1.2e-06	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03667 AT2G03667
fragaria_vesca	FvH4_4g29880 FvH4_4g29880 FvH4_4g29880 FvH4_4g29880 FvH4_4g29880 FvH4_4g29880 FvH4_4g29880 FvH4_4g29880
malus_domestica	MD13G1061700.v1.1 MD16G1060200.v1.1
prunus_persica	Prupe.1G288300_v2.0.a1 Prupe.1G288300_v2.0.a1 Prupe.1G288300_v2.0.a1 Prupe.1G288300_v2.0.a1
pyrus_communis	pycom16g05240
rosa_chinensis	RchiOBHm_Chr4g0438141
rosa_laevigata	RLG00000006385
rosa_multiflora	Rmu_sc0004728.1_g000004 Rmu_sc0020161.1_g000004
rosa_roxburghii	Rroxscaffold_5G00379270
rosa_rugosa	Rorug04G0307300 Rorug04G0307400 Rorug04G0307500 Rorug04G0307600 Rorug04G0307700
rosa_samantha	Rh4AG358800 Rh4BG369700 Rh4CG383800 Rh4DG364600
rosa_wichuraiana	Rw0G006330 Rw0G016270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	155
Acc16I	TGCGCA	1 cut(s)	441
Acc36I	ACCTGC	1 cut(s)	155
AccB1I	GGYRCC	3 cut(s)	191, 500, 602
AccBSI	CCGCTC	1 cut(s)	250
AccII	CGCG	2 cut(s)	189, 455
AciI	CCGC	9 cut(s)	97, 187, 189, 196, 250, 393, 453, 455, 641
AcoI	YGGCCR	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	640
AfaI	GTAC	1 cut(s)	50
AgsI	TTSAA	2 cut(s)	349, 530
AhdI	GACNNNNNGTC	1 cut(s)	215
AhlI	ACTAGT	1 cut(s)	34
AluBI	AGCT	6 cut(s)	118, 241, 285, 364, 493, 797
AluI	AGCT	6 cut(s)	118, 241, 285, 364, 493, 797
Alw21I	GWGCWC	2 cut(s)	243, 552
Alw26I	GTCTC	2 cut(s)	619, 691
AlwNI	CAGNNNCTG	1 cut(s)	493
AoxI	GGCC	4 cut(s)	292, 351, 383, 684
ApeKI	GCWGC	2 cut(s)	361, 369
AspLEI	GCGC	2 cut(s)	434, 442
AspS9I	GGNCC	2 cut(s)	252, 271
AsuC2I	CCSGG	2 cut(s)	107, 674
AsuHPI	GGTGA	3 cut(s)	4, 205, 547
AsuII	TTCGAA	1 cut(s)	121
AvaII	GGWCC	2 cut(s)	252, 271
BanI	GGYRCC	3 cut(s)	191, 500, 602
BanII	GRGCYC	2 cut(s)	73, 243
BauI	CACGAG	1 cut(s)	419
BbsI	GAAGAC	1 cut(s)	764
Bbv12I	GWGCWC	2 cut(s)	243, 552
BbvI	GCAGC	2 cut(s)	373, 381
BccI	CCATC	2 cut(s)	34, 404
BceAI	ACGGC	2 cut(s)	514, 654
BcgI	CGANNNNNNTGC	2 cut(s)	549, 583
BclI	TGATCA	1 cut(s)	165
BcnI	CCSGG	2 cut(s)	107, 674
BcoDI	GTCTC	2 cut(s)	619, 691
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	2 cut(s)	35, 581
BfmI	CTRYAG	1 cut(s)	688
BfuAI	ACCTGC	1 cut(s)	155
BisI	GCNGC	4 cut(s)	190, 362, 370, 456
BlpI	GCTNAGC	1 cut(s)	365
BlsI	GCNGC	4 cut(s)	191, 363, 371, 457
Bme1390I	CCNGG	2 cut(s)	107, 674
Bme18I	GGWCC	2 cut(s)	252, 271
BmeRI	GACNNNNNGTC	1 cut(s)	215
BmgT120I	GGNCC	2 cut(s)	252, 271
BmiI	GGNNCC	4 cut(s)	70, 193, 502, 604
BmrFI	CCNGG	2 cut(s)	107, 674
BmrI	ACTGGG	1 cut(s)	723
BmsI	GCATC	1 cut(s)	493
BmuI	ACTGGG	1 cut(s)	723
BpiI	GAAGAC	1 cut(s)	764
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
Bpu1102I	GCTNAGC	1 cut(s)	365
Bpu14I	TTCGAA	1 cut(s)	121
BpuMI	CCSGG	2 cut(s)	107, 674
BsaJI	CCNNGG	4 cut(s)	187, 267, 453, 504
Bse1I	ACTGG	3 cut(s)	687, 705, 718
Bse3DI	GCAATG	2 cut(s)	465, 741
BseDI	CCNNGG	4 cut(s)	187, 267, 453, 504
BseGI	GGATG	2 cut(s)	153, 673
BseMI	GCAATG	2 cut(s)	465, 741
BseMII	CTCAG	2 cut(s)	379, 630
BseNI	ACTGG	3 cut(s)	687, 705, 718
BseXI	GCAGC	2 cut(s)	373, 381
Bsh1236I	CGCG	2 cut(s)	189, 455
BshFI	GGCC	4 cut(s)	294, 353, 385, 686
BshNI	GGYRCC	3 cut(s)	191, 500, 602
BsiHKAI	GWGCWC	2 cut(s)	243, 552
BsiSI	CCGG	2 cut(s)	107, 673
BslFI	GGGAC	2 cut(s)	169, 531
BsmAI	GTCTC	2 cut(s)	619, 691
BsmFI	GGGAC	2 cut(s)	169, 531
BsnI	GGCC	4 cut(s)	294, 353, 385, 686
Bsp119I	TTCGAA	1 cut(s)	121
Bsp1286I	GDGCHC	3 cut(s)	73, 243, 552
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	165
Bsp1720I	GCTNAGC	1 cut(s)	365
Bsp19I	CCATGG	2 cut(s)	267, 504
BspACI	CCGC	9 cut(s)	97, 187, 189, 196, 250, 393, 453, 455, 641
BspANI	GGCC	4 cut(s)	294, 353, 385, 686
BspCNI	CTCAG	2 cut(s)	378, 629
BspFNI	CGCG	2 cut(s)	189, 455
BspLI	GGNNCC	4 cut(s)	70, 193, 502, 604
BspMI	ACCTGC	1 cut(s)	155
BspT104I	TTCGAA	1 cut(s)	121
BspT107I	GGYRCC	3 cut(s)	191, 500, 602
BsrBI	CCGCTC	1 cut(s)	250
BsrDI	GCAATG	2 cut(s)	465, 741
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	3 cut(s)	687, 705, 718
BssECI	CCNNGG	4 cut(s)	187, 267, 453, 504
BssMI	GATC	1 cut(s)	165
BssSI	CACGAG	1 cut(s)	419
BssT1I	CCWWGG	2 cut(s)	267, 504
Bst2BI	CACGAG	1 cut(s)	419
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	2 cut(s)	308, 406
BstAUI	TGTACA	1 cut(s)	48
BstBI	TTCGAA	1 cut(s)	121
BstC8I	GCNNGC	4 cut(s)	133, 200, 283, 622
BstDEI	CTNAG	2 cut(s)	365, 616
BstDSI	CCRYGG	4 cut(s)	187, 267, 453, 504
BstF5I	GGATG	2 cut(s)	153, 673
BstFNI	CGCG	2 cut(s)	189, 455
BstHHI	GCGC	2 cut(s)	434, 442
BstKTI	GATC	1 cut(s)	168
BstMAI	GTCTC	2 cut(s)	619, 691
BstMBI	GATC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	6 cut(s)	195, 247, 291, 350, 490, 647
BstNSI	RCATGY	3 cut(s)	135, 418, 560
BstSCI	CCNGG	2 cut(s)	105, 672
BstSFI	CTRYAG	1 cut(s)	688
BstUI	CGCG	2 cut(s)	189, 455
BstV1I	GCAGC	2 cut(s)	373, 381
BstV2I	GAAGAC	1 cut(s)	764
BsuRI	GGCC	4 cut(s)	294, 353, 385, 686
BtgI	CCRYGG	4 cut(s)	187, 267, 453, 504
BtgZI	GCGATG	1 cut(s)	639
BtsCI	GGATG	2 cut(s)	153, 673
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	2 cut(s)	51, 680
BveI	ACCTGC	1 cut(s)	155
Cac8I	GCNNGC	4 cut(s)	133, 200, 283, 622
CaiI	CAGNNNCTG	1 cut(s)	493
CfoI	GCGC	2 cut(s)	434, 442
Cfr13I	GGNCC	2 cut(s)	252, 271
Cfr42I	CCGCGG	2 cut(s)	190, 456
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	9 cut(s)	132, 163, 221, 226, 268, 415, 505, 557, 607
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	2 cut(s)	365, 616
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
DraI	TTTAAA	1 cut(s)	408
DriI	GACNNNNNGTC	1 cut(s)	215
EaeI	YGGCCR	1 cut(s)	383
Eam1104I	CTCTTC	2 cut(s)	308, 406
Eam1105I	GACNNNNNGTC	1 cut(s)	215
EarI	CTCTTC	2 cut(s)	308, 406
Ecl136II	GAGCTC	1 cut(s)	241
Eco130I	CCWWGG	2 cut(s)	267, 504
Eco147I	AGGCCT	1 cut(s)	353
Eco24I	GRGCYC	2 cut(s)	73, 243
Eco47I	GGWCC	2 cut(s)	252, 271
Eco53kI	GAGCTC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	640
EcoICRI	GAGCTC	1 cut(s)	241
EcoT14I	CCWWGG	2 cut(s)	267, 504
EcoT38I	GRGCYC	2 cut(s)	73, 243
ErhI	CCWWGG	2 cut(s)	267, 504
FaeI	CATG	9 cut(s)	135, 166, 224, 229, 271, 418, 508, 560, 610
FaqI	GGGAC	2 cut(s)	169, 531
FatI	CATG	9 cut(s)	131, 162, 220, 225, 267, 414, 504, 556, 606
FauI	CCCGC	2 cut(s)	194, 203
FauNDI	CATATG	1 cut(s)	428
FbaI	TGATCA	1 cut(s)	165
Fnu4HI	GCNGC	4 cut(s)	190, 362, 370, 456
FokI	GGATG	2 cut(s)	140, 680
FriOI	GRGCYC	2 cut(s)	73, 243
Fsp4HI	GCNGC	4 cut(s)	190, 362, 370, 456
FspAI	RTGCGCAY	1 cut(s)	441
FspBI	CTAG	2 cut(s)	35, 581
FspI	TGCGCA	1 cut(s)	441
GlaI	GCGC	2 cut(s)	433, 441
GluI	GCNGC	4 cut(s)	190, 362, 370, 456
HaeIII	GGCC	4 cut(s)	294, 353, 385, 686
HapII	CCGG	2 cut(s)	107, 673
HhaI	GCGC	2 cut(s)	434, 442
Hin1II	CATG	9 cut(s)	135, 166, 224, 229, 271, 418, 508, 560, 610
Hin6I	GCGC	2 cut(s)	432, 440
HinP1I	GCGC	2 cut(s)	432, 440
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	7 cut(s)	179, 210, 379, 509, 577, 594, 738
HpaII	CCGG	2 cut(s)	107, 673
HphI	GGTGA	3 cut(s)	4, 205, 547
Hpy166II	GTNNAC	5 cut(s)	12, 49, 206, 274, 538
Hpy188I	TCNGA	3 cut(s)	247, 489, 659
Hpy8I	GTNNAC	5 cut(s)	12, 49, 206, 274, 538
HpyAV	CCTTC	2 cut(s)	28, 657
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	6 cut(s)	150, 229, 418, 560, 610, 722
HpyF10VI	GCNNNNNNNGC	6 cut(s)	195, 247, 291, 350, 490, 647
HpyF3I	CTNAG	2 cut(s)	365, 616
Hsp92II	CATG	9 cut(s)	135, 166, 224, 229, 271, 418, 508, 560, 610
HspAI	GCGC	2 cut(s)	432, 440
Ksp22I	TGATCA	1 cut(s)	165
KspI	CCGCGG	2 cut(s)	190, 456
Kzo9I	GATC	1 cut(s)	165
LmnI	GCTCC	5 cut(s)	68, 247, 555, 751, 773
Lsp1109I	GCAGC	2 cut(s)	373, 381
LweI	GCATC	1 cut(s)	493
MaeI	CTAG	2 cut(s)	35, 581
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	1 cut(s)	167
MbiI	CCGCTC	1 cut(s)	250
MboI	GATC	1 cut(s)	165
MboII	GAAGA	4 cut(s)	325, 393, 646, 769
MhlI	GDGCHC	3 cut(s)	73, 243, 552
MluCI	AATT	1 cut(s)	779
MlyI	GAGTC	4 cut(s)	188, 204, 518, 588
MmeI	TCCRAC	1 cut(s)	577
MnlI	CCTC	9 cut(s)	182, 242, 265, 274, 305, 415, 584, 653, 670
MseI	TTAA	2 cut(s)	375, 407
MspA1I	CMGCKG	3 cut(s)	189, 455, 797
MspI	CCGG	2 cut(s)	107, 673
MspR9I	CCNGG	2 cut(s)	107, 674
MvnI	CGCG	2 cut(s)	189, 455
MwoI	GCNNNNNNNGC	6 cut(s)	195, 247, 291, 350, 490, 647
NciI	CCSGG	2 cut(s)	107, 674
NcoI	CCATGG	2 cut(s)	267, 504
NdeI	CATATG	1 cut(s)	428
NdeII	GATC	1 cut(s)	165
NlaIII	CATG	9 cut(s)	135, 166, 224, 229, 271, 418, 508, 560, 610
NlaIV	GGNNCC	4 cut(s)	70, 193, 502, 604
NmuCI	GTSAC	1 cut(s)	259
NsbI	TGCGCA	1 cut(s)	441
NspI	RCATGY	3 cut(s)	135, 418, 560
NspV	TTCGAA	1 cut(s)	121
PaeI	GCATGC	1 cut(s)	135
PaqCI	CACCTGC	1 cut(s)	155
PceI	AGGCCT	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PfeI	GAWTC	3 cut(s)	379, 577, 738
PkrI	GCNGC	4 cut(s)	191, 363, 371, 457
PleI	GAGTC	4 cut(s)	187, 204, 517, 588
PpsI	GAGTC	4 cut(s)	187, 204, 517, 588
Psp124BI	GAGCTC	1 cut(s)	243
PspN4I	GGNNCC	4 cut(s)	70, 193, 502, 604
PspPI	GGNCC	2 cut(s)	252, 271
PstNI	CAGNNNCTG	1 cut(s)	493
PvuII	CAGCTG	1 cut(s)	797
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	243
SacII	CCGCGG	2 cut(s)	190, 456
SaqAI	TTAA	2 cut(s)	375, 407
SatI	GCNGC	4 cut(s)	190, 362, 370, 456
Sau3AI	GATC	1 cut(s)	165
Sau96I	GGNCC	2 cut(s)	252, 271
SchI	GAGTC	4 cut(s)	188, 204, 518, 588
ScrFI	CCNGG	2 cut(s)	107, 674
SduI	GDGCHC	3 cut(s)	73, 243, 552
SfaNI	GCATC	1 cut(s)	493
SfcI	CTRYAG	1 cut(s)	688
Sfr303I	CCGCGG	2 cut(s)	190, 456
SfuI	TTCGAA	1 cut(s)	121
SgrBI	CCGCGG	2 cut(s)	190, 456
SinI	GGWCC	2 cut(s)	252, 271
SpeI	ACTAGT	1 cut(s)	34
SphI	GCATGC	1 cut(s)	135
Sse9I	AATT	1 cut(s)	779
SseBI	AGGCCT	1 cut(s)	353
SsiI	CCGC	9 cut(s)	97, 187, 189, 196, 250, 393, 453, 455, 641
SspI	AATATT	1 cut(s)	126
SspMI	CTAG	2 cut(s)	35, 581
SstI	GAGCTC	1 cut(s)	243
StuI	AGGCCT	1 cut(s)	353
StyD4I	CCNGG	2 cut(s)	105, 672
StyI	CCWWGG	2 cut(s)	267, 504
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	2 cut(s)	121, 177
TasI	AATT	1 cut(s)	779
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	2 cut(s)	192, 458
TfiI	GAWTC	3 cut(s)	379, 577, 738
Tru1I	TTAA	2 cut(s)	375, 407
Tru9I	TTAA	2 cut(s)	375, 407
TscAI	CASTG	2 cut(s)	51, 687
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	2 cut(s)	361, 369
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	10, 730
TspRI	CASTG	2 cut(s)	51, 687
VpaK11BI	GGWCC	2 cut(s)	252, 271
XceI	RCATGY	3 cut(s)	135, 418, 560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XspI	CTAG	2 cut(s)	35, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.