Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004209

Physical Location & Seq

Genomic Coordinates Reverse (-)

52762883 .. 52767163

Gene Structure 4281 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG369700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1698 bp

ATGCATTTTTTTGGTGCTACTTTGCAGCTCAGGGGAGTGAACGCAGTAGTTCAGCCATTGATTGATTCGTCTAAGAATGTTCTTGTTTATAATGGTGAGATCTTTGGGGGGATTGAGATTGCTAGTGAGGAGAATGACGGTGAAGTTCTAATGGGGTTGCTGGGAGGGTGTGAAGGTTGTGTGCCGAATGTTGTTTCTAGGATCAAGGGCCCTTGGGCTATCATCTATTGGCAGGAAAGTTCAAGAACATTATGGTTTGGGAGAGATGCATTTGGTCGCCGGAGTCTTCTTGTTCATTGGCCGACAGTGGAGGACTCTCGGTTTCTGTTATCATCAGTATCACCCGTTGCTTCAAATGAGCATTCTTCTGCTGAAAATGGAACAACCAAGCTTGGTTTTTGGGAGGAGCTGCCATGTGGAATATACAGTGTATCCATAGATGCTCCCGATGGTGACGGGAGTTTGGTTGGTGAAGTGAAAAAGCATGAATGGACTAATGCCATGCTAGAAGAACTGATAAAATGGGAGAGAACATCTGTCGAACCCAAACCCGAAGAGTTGCATAGTTCACGTTGTGAGACTGTAAGAGGGCAACACGATATGAACTCACTTACTTCAGATATAGTGCCAATGCCATCTAAGTCAGGCAATATACAAGCTTCAATTTCAGTGCCAGCAGAGGCTGTGCTGATTGCTTTAAGGGAATCAGTTTTGCGGCGATCTTCACTGCACAGAATTTTTCAGGCAAGTATGCATGATGTGGAAAAGAATCTTGTACCGGTGGCAGTTCTTTTTTCTGGTGGATTGGACTCTATGATAATTGCAGCATTGTTGCATGAGTGCCTAGATCCAAGCTATGAGATTGATCTACTTAATGTGAGCTTCGATGGTCAGTCTGCTCCAGATAGAATCTCTGCCAAGGCAGGAGTGAGCGAACTGAGAAGAATTGCACCTTTAAGAAAGTGGAAACTAGTGGAGATTGATGCTGATTTATCAAATTTGACCTTTGAAACAAAGCGTGTATTGTCTCTCATAAACCCTGCCAACACCTACATGGACCTAAATATAGGAATTGCGTTATGGCTGGCAGCTGGTGGGGATGGATGGGTTTATGAGGAAAATAGCAAATATAATGATGAGAATCGTCAAGGTGTTAAATACAAGTCAAAGGCTAGGATTGTCCTTGTTGGTTCAGGTGCAGATGAGCAATGTGCTGGCTATGGTAGGCACAGAACAAAATATAGAAGTGGAAGTTGGCTGCGACTGCATGAGGAAATGAAACTAGATATGCAAAGAATATGGAAAAGAAACCTTGGTAGAGATGATAGATGCATTGCTGACACTGGCAAGGAGGCAAGGTTTCCTTTCTTGGATGAAGATGTTATACGAACTTTATTGGGGATTCCTCTCTGGGAGGTTACCAACCTTGATCAACCAAGTGGAATAGGAGATAAGAAGATTTTGAGAGAGGTAATTGGTAATTCCTTTGTGCAGCACTTGAGTTACATAGGTAATTGGATCCTAAATAAAAACTGCTTTGAATCACGCAAAACATTGATTATTCACTTAGAAAGCCAATATTTATCTGGTTATGGTTTTGATAAGTGCCTCTTCTCTTCTCCCTTTCGATATTTCTCAGCCTTAGCTCAAAACACTTTTTTCATAGATCGACTTTTGCTCTTAATTTGTACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0032787 GO:0034641 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046394 GO:0046983 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

565

Amino Acids

63.3

Weight (kDa)

5.66

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_7	PF13537	14 - 112	3.4e-09	Glutamine amidotransferase domain
Asn_synthase	PF00733	416 - 492	1.6e-07	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03667 AT2G03667
fragaria_vesca	FvH4_4g29880 FvH4_4g29880 FvH4_4g29880 FvH4_4g29880 FvH4_4g29880 FvH4_4g29880 FvH4_4g29880 FvH4_4g29880
malus_domestica	MD13G1061700.v1.1 MD16G1060200.v1.1
prunus_persica	Prupe.1G288300_v2.0.a1 Prupe.1G288300_v2.0.a1 Prupe.1G288300_v2.0.a1 Prupe.1G288300_v2.0.a1
pyrus_communis	pycom16g05240
rosa_chinensis	RchiOBHm_Chr4g0438141
rosa_laevigata	RLG00000006385
rosa_multiflora	Rmu_sc0004728.1_g000004 Rmu_sc0020161.1_g000004
rosa_roxburghii	Rroxscaffold_5G00379270
rosa_rugosa	Rorug04G0307300 Rorug04G0307400 Rorug04G0307500 Rorug04G0307600 Rorug04G0307700
rosa_samantha	Rh4AG358800 Rh4BG369700 Rh4CG383800 Rh4DG364600
rosa_wichuraiana	Rw0G006330 Rw0G016270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AciI	CCGC	1 cut(s)	715
AclWI	GGATC	4 cut(s)	209, 842, 1513, 1526
AcoI	YGGCCR	1 cut(s)	299
AcsI	RAATTY	2 cut(s)	735, 997
AcuI	CTGAAG	1 cut(s)	600
AdeI	CACNNNGTG	1 cut(s)	575
AfaI	GTAC	2 cut(s)	777, 1690
AgeI	ACCGGT	1 cut(s)	778
AgsI	TTSAA	5 cut(s)	243, 354, 663, 1010, 1541
AhlI	ACTAGT	1 cut(s)	970
AjuI	GAANNNNNNNTTGG	2 cut(s)	1237, 1269
AluBI	AGCT	8 cut(s)	28, 391, 409, 659, 855, 882, 1091, 1646
AluI	AGCT	8 cut(s)	28, 391, 409, 659, 855, 882, 1091, 1646
Alw26I	GTCTC	2 cut(s)	572, 1032
AlwI	GGATC	4 cut(s)	209, 842, 1513, 1526
AlwNI	CAGNNNCTG	1 cut(s)	683
AoxI	GGCC	2 cut(s)	208, 299
ApaI	GGGCCC	1 cut(s)	212
ApeKI	GCWGC	6 cut(s)	25, 409, 824, 1088, 1258, 1492
ApoI	RAATTY	2 cut(s)	735, 997
AsiGI	ACCGGT	1 cut(s)	778
AspS9I	GGNCC	3 cut(s)	208, 209, 1057
AsuHPI	GGTGA	5 cut(s)	107, 152, 333, 464, 482
AvaII	GGWCC	1 cut(s)	1057
BaeGI	GKGCMC	1 cut(s)	212
BamHI	GGATCC	1 cut(s)	1518
BanII	GRGCYC	1 cut(s)	212
BarI	GAAGNNNNNNTAC	2 cut(s)	1368, 1400
BbsI	GAAGAC	1 cut(s)	278
BbvI	GCAGC	6 cut(s)	37, 396, 836, 1100, 1245, 1504
BccI	CCATC	5 cut(s)	443, 643, 881, 1094, 1098
BciVI	GTATCC	1 cut(s)	442
BclI	TGATCA	1 cut(s)	1429
BcoDI	GTCTC	2 cut(s)	572, 1032
BcuI	ACTAGT	1 cut(s)	970
BfaI	CTAG	7 cut(s)	123, 198, 506, 845, 971, 1173, 1283
BfuI	GTATCC	1 cut(s)	442
BglII	AGATCT	1 cut(s)	99
BisI	GCNGC	7 cut(s)	26, 410, 716, 825, 1089, 1259, 1493
BlsI	GCNGC	7 cut(s)	27, 411, 717, 826, 1090, 1260, 1494
Bme18I	GGWCC	1 cut(s)	1057
BmgT120I	GGNCC	3 cut(s)	208, 209, 1057
BmiI	GGNNCC	2 cut(s)	210, 1520
BmsI	GCATC	4 cut(s)	256, 430, 973, 1319
BpiI	GAAGAC	1 cut(s)	278
BpmI	CTGGAG	1 cut(s)	885
Bpu10I	CCTNAGC	2 cut(s)	29, 1642
BpuEI	CTTGAG	1 cut(s)	1519
BsaBI	GATNNNNATC	1 cut(s)	1140
BsaJI	CCNNGG	3 cut(s)	212, 918, 1312
BsaWI	WCCGGW	1 cut(s)	778
BsaXI	ACNNNNNCTCC	2 cut(s)	1343, 1373
Bse118I	RCCGGY	1 cut(s)	778
Bse1I	ACTGG	1 cut(s)	1348
Bse3DI	GCAATG	2 cut(s)	1214, 1332
Bse8I	GATNNNNATC	1 cut(s)	1140
BseDI	CCNNGG	3 cut(s)	212, 918, 1312
BseGI	GGATG	3 cut(s)	1105, 1109, 1378
BseJI	GATNNNNATC	1 cut(s)	1140
BseMI	GCAATG	2 cut(s)	1214, 1332
BseMII	CTCAG	3 cut(s)	43, 929, 1650
BseNI	ACTGG	1 cut(s)	1348
BseRI	GAGGAG	2 cut(s)	143, 419
BseSI	GKGCMC	1 cut(s)	212
BseXI	GCAGC	6 cut(s)	37, 396, 836, 1100, 1245, 1504
BseYI	CCCAGC	1 cut(s)	160
BsgI	GTGCAG	3 cut(s)	713, 1218, 1511
BshFI	GGCC	2 cut(s)	210, 301
BshTI	ACCGGT	1 cut(s)	778
BsiSI	CCGG	2 cut(s)	280, 779
BsmAI	GTCTC	2 cut(s)	572, 1032
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	2 cut(s)	210, 301
Bsp120I	GGGCCC	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	8 cut(s)	99, 201, 719, 847, 865, 1429, 1518, 1666
BspACI	CCGC	1 cut(s)	715
BspANI	GGCC	2 cut(s)	210, 301
BspCNI	CTCAG	3 cut(s)	42, 930, 1649
BspLI	GGNNCC	2 cut(s)	210, 1520
BspPI	GGATC	4 cut(s)	209, 842, 1513, 1526
BsrDI	GCAATG	2 cut(s)	1214, 1332
BsrFI	RCCGGY	1 cut(s)	778
BsrI	ACTGG	1 cut(s)	1348
BssAI	RCCGGY	1 cut(s)	778
BssECI	CCNNGG	3 cut(s)	212, 918, 1312
BssMI	GATC	8 cut(s)	99, 201, 719, 847, 865, 1429, 1518, 1666
BssT1I	CCWWGG	3 cut(s)	212, 918, 1312
Bst4CI	ACNGT	4 cut(s)	140, 307, 428, 583
Bst6I	CTCTTC	3 cut(s)	549, 1616, 1621
BstC8I	GCNNGC	3 cut(s)	675, 1086, 1216
BstDEI	CTNAG	7 cut(s)	29, 72, 639, 938, 1567, 1636, 1642
BstEII	GGTNACC	1 cut(s)	1417
BstF5I	GGATG	3 cut(s)	1105, 1109, 1378
BstKTI	GATC	8 cut(s)	102, 204, 722, 850, 868, 1432, 1521, 1669
BstMAI	GTCTC	2 cut(s)	572, 1032
BstMBI	GATC	8 cut(s)	99, 201, 719, 847, 865, 1429, 1518, 1666
BstMWI	GCNNNNNNNGC	1 cut(s)	1264
BstPI	GGTNACC	1 cut(s)	1417
BstSLI	GKGCMC	1 cut(s)	212
BstV1I	GCAGC	6 cut(s)	37, 396, 836, 1100, 1245, 1504
BstV2I	GAAGAC	1 cut(s)	278
BstX2I	RGATCY	3 cut(s)	99, 847, 1518
BstYI	RGATCY	3 cut(s)	99, 847, 1518
BsuI	GTATCC	1 cut(s)	442
BsuRI	GGCC	2 cut(s)	210, 301
BtsCI	GGATG	3 cut(s)	1105, 1109, 1378
BtsI	GCAGTG	1 cut(s)	725
BtsIMutI	CAGTG	5 cut(s)	312, 433, 675, 725, 1341
Cac8I	GCNNGC	3 cut(s)	675, 1086, 1216
CaiI	CAGNNNCTG	1 cut(s)	683
Cfr10I	RCCGGY	1 cut(s)	778
Cfr13I	GGNCC	3 cut(s)	208, 209, 1057
Csp6I	GTAC	2 cut(s)	776, 1689
CspAI	ACCGGT	1 cut(s)	778
CviAII	CATG	7 cut(s)	414, 485, 502, 755, 836, 1054, 1268
CviQI	GTAC	2 cut(s)	776, 1689
DdeI	CTNAG	7 cut(s)	29, 72, 639, 938, 1567, 1636, 1642
DpnI	GATC	8 cut(s)	101, 203, 721, 849, 867, 1431, 1520, 1668
DpnII	GATC	8 cut(s)	99, 201, 719, 847, 865, 1429, 1518, 1666
DraIII	CACNNNGTG	1 cut(s)	575
EaeI	YGGCCR	1 cut(s)	299
Eam1104I	CTCTTC	3 cut(s)	549, 1616, 1621
EarI	CTCTTC	3 cut(s)	549, 1616, 1621
Eco130I	CCWWGG	3 cut(s)	212, 918, 1312
Eco24I	GRGCYC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	1057
Eco57I	CTGAAG	1 cut(s)	600
Eco91I	GGTNACC	1 cut(s)	1417
EcoO109I	RGGNCCY	2 cut(s)	208, 209
EcoO65I	GGTNACC	1 cut(s)	1417
EcoT14I	CCWWGG	3 cut(s)	212, 918, 1312
EcoT22I	ATGCAT	4 cut(s)	6, 271, 756, 1334
EcoT38I	GRGCYC	1 cut(s)	212
ErhI	CCWWGG	3 cut(s)	212, 918, 1312
FaeI	CATG	7 cut(s)	417, 488, 505, 758, 839, 1057, 1271
FalI	AAGNNNNNCTT	4 cut(s)	1348, 1380, 1595, 1627
FatI	CATG	7 cut(s)	413, 484, 501, 754, 835, 1053, 1267
FbaI	TGATCA	1 cut(s)	1429
Fnu4HI	GCNGC	7 cut(s)	26, 410, 716, 825, 1089, 1259, 1493
FokI	GGATG	3 cut(s)	1112, 1116, 1385
FriOI	GRGCYC	1 cut(s)	212
Fsp4HI	GCNGC	7 cut(s)	26, 410, 716, 825, 1089, 1259, 1493
FspBI	CTAG	7 cut(s)	123, 198, 506, 845, 971, 1173, 1283
GluI	GCNGC	7 cut(s)	26, 410, 716, 825, 1089, 1259, 1493
GsaI	CCCAGC	1 cut(s)	164
GsuI	CTGGAG	1 cut(s)	885
HaeIII	GGCC	2 cut(s)	210, 301
HapII	CCGG	2 cut(s)	280, 779
Hin1II	CATG	7 cut(s)	417, 488, 505, 758, 839, 1057, 1271
HindIII	AAGCTT	2 cut(s)	389, 657
HpaII	CCGG	2 cut(s)	280, 779
HphI	GGTGA	5 cut(s)	107, 152, 333, 464, 482
Hpy166II	GTNNAC	2 cut(s)	40, 569
Hpy188I	TCNGA	1 cut(s)	619
Hpy188III	TCNNGA	3 cut(s)	243, 446, 902
Hpy8I	GTNNAC	2 cut(s)	40, 569
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	4 cut(s)	140, 307, 428, 583
HpyCH4IV	ACGT	1 cut(s)	571
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1264
HpyF3I	CTNAG	7 cut(s)	29, 72, 639, 938, 1567, 1636, 1642
HpySE526I	ACGT	1 cut(s)	571
Hsp92II	CATG	7 cut(s)	417, 488, 505, 758, 839, 1057, 1271
Ksp22I	TGATCA	1 cut(s)	1429
Kzo9I	GATC	8 cut(s)	99, 201, 719, 847, 865, 1429, 1518, 1666
LmnI	GCTCC	3 cut(s)	406, 448, 904
Lsp1109I	GCAGC	6 cut(s)	37, 396, 836, 1100, 1245, 1504
LweI	GCATC	4 cut(s)	256, 430, 973, 1319
MaeI	CTAG	7 cut(s)	123, 198, 506, 845, 971, 1173, 1283
MaeII	ACGT	1 cut(s)	571
MaeIII	GTNAC	3 cut(s)	452, 1417, 1502
MalI	GATC	8 cut(s)	101, 203, 721, 849, 867, 1431, 1520, 1668
MboI	GATC	8 cut(s)	99, 201, 719, 847, 865, 1429, 1518, 1666
MflI	RGATCY	3 cut(s)	99, 847, 1518
MhlI	GDGCHC	1 cut(s)	212
MlyI	GAGTC	3 cut(s)	292, 308, 803
Mph1103I	ATGCAT	4 cut(s)	6, 271, 756, 1334
MseI	TTAA	5 cut(s)	698, 873, 956, 1155, 1682
MslI	CAYNNNNRTG	1 cut(s)	1052
MspA1I	CMGCKG	1 cut(s)	1091
MspI	CCGG	2 cut(s)	280, 779
Mva1269I	GAATGC	1 cut(s)	361
MwoI	GCNNNNNNNGC	1 cut(s)	1264
NdeII	GATC	8 cut(s)	99, 201, 719, 847, 865, 1429, 1518, 1666
NlaIII	CATG	7 cut(s)	417, 488, 505, 758, 839, 1057, 1271
NlaIV	GGNNCC	2 cut(s)	210, 1520
NmuCI	GTSAC	1 cut(s)	452
NsiI	ATGCAT	4 cut(s)	6, 271, 756, 1334
PctI	GAATGC	1 cut(s)	361
PfeI	GAWTC	7 cut(s)	65, 704, 769, 909, 1141, 1402, 1541
PinAI	ACCGGT	1 cut(s)	778
PkrI	GCNGC	7 cut(s)	27, 411, 717, 826, 1090, 1260, 1494
PleI	GAGTC	3 cut(s)	291, 308, 803
PpsI	GAGTC	3 cut(s)	291, 308, 803
PsiI	TTATAA	1 cut(s)	90
PspEI	GGTNACC	1 cut(s)	1417
PspFI	CCCAGC	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	210, 1520
PspOMI	GGGCCC	1 cut(s)	208
PspPI	GGNCC	3 cut(s)	208, 209, 1057
PstNI	CAGNNNCTG	1 cut(s)	683
PsuI	RGATCY	3 cut(s)	99, 847, 1518
PvuII	CAGCTG	1 cut(s)	1091
RsaI	GTAC	2 cut(s)	777, 1690
RsaNI	GTAC	2 cut(s)	776, 1689
RseI	CAYNNNNRTG	1 cut(s)	1052
SaqAI	TTAA	5 cut(s)	698, 873, 956, 1155, 1682
SatI	GCNGC	7 cut(s)	26, 410, 716, 825, 1089, 1259, 1493
Sau3AI	GATC	8 cut(s)	99, 201, 719, 847, 865, 1429, 1518, 1666
Sau96I	GGNCC	3 cut(s)	208, 209, 1057
SchI	GAGTC	3 cut(s)	292, 308, 803
SduI	GDGCHC	1 cut(s)	212
SfaNI	GCATC	4 cut(s)	256, 430, 973, 1319
SinI	GGWCC	1 cut(s)	1057
SmiMI	CAYNNNNRTG	1 cut(s)	1052
SmlI	CTYRAG	1 cut(s)	1498
SmoI	CTYRAG	1 cut(s)	1498
SpeI	ACTAGT	1 cut(s)	970
SsiI	CCGC	1 cut(s)	715
SspI	AATATT	1 cut(s)	1580
SspMI	CTAG	7 cut(s)	123, 198, 506, 845, 971, 1173, 1283
StyI	CCWWGG	3 cut(s)	212, 918, 1312
TaaI	ACNGT	4 cut(s)	140, 307, 428, 583
TaiI	ACGT	1 cut(s)	574
TaqI	TCGA	4 cut(s)	540, 885, 1627, 1669
TatI	WGTACW	1 cut(s)	1688
TauI	GCSGC	1 cut(s)	718
TfiI	GAWTC	7 cut(s)	65, 704, 769, 909, 1141, 1402, 1541
Tru1I	TTAA	5 cut(s)	698, 873, 956, 1155, 1682
Tru9I	TTAA	5 cut(s)	698, 873, 956, 1155, 1682
TscAI	CASTG	5 cut(s)	312, 433, 675, 732, 1348
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	6 cut(s)	25, 409, 824, 1088, 1258, 1492
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	6 cut(s)	284, 501, 617, 1292, 1389, 1651
TspRI	CASTG	5 cut(s)	312, 433, 675, 732, 1348
VpaK11BI	GGWCC	1 cut(s)	1057
XapI	RAATTY	2 cut(s)	735, 997
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1051, 1583
XspI	CTAG	7 cut(s)	123, 198, 506, 845, 971, 1173, 1283
Zsp2I	ATGCAT	4 cut(s)	6, 271, 756, 1334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.