Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004209

Physical Location & Seq

Genomic Coordinates Reverse (-)

48334362 .. 48335837

Gene Structure 1476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0307600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGCCAAGTGTGGATCTAAGAAGAAGAAGAAGCACCAAGATGAAAGCTTTGTTCTTGTACCTGAAGAAAAGGCCCAAACTGAAGCAAGGGGTCTTCCTTGCAATGGTGTTCTTGGCAGCCTCCTCGTTTTTATGGGTCGCAACCTCTCTCCTCCGCAACACCCGTTACACCTCCAACTTGAGTCTCTCACCTCAATCCTCACTCTCTGATTCAAGCCCTTATCACAACTTCAAGCTCTTCGCCGCCGACTTCAAGGACATGATCCGGAGCTTCAAGATCTACGTCTACCCAACTAATTCATCTTCCTTTGCTCAGATTTTCGACCCCCACCCAAACCCATTCGACCCCAAAATGGGAAACTACTTCAGTGAACACATGTTCAAGCTGGCTCTGCTTGAGAGCCCACTCAGTACCCACAATCCTGAAGAAGCTGATCTCTATTTCTTGCCGTTTTCGGTCAATCTTCTCCGAAACGACCCAAGGGTCCATTCGGAGGATGCCATTTCCGAATTTGTGGCTCATTACACCCATGAGATTAGCCAAGGGTTTCCTTTCTGGAATGCCTCCATGGGTTTGGATCATTTCTATGCTTGCTGCCACTCTGTTTGCAGAGAGGCCATGGCGAAACACAATGACTTGCGCAACAATGCCATTCAGCTCACTTGCTCCTCCAGCTACTTTCAGAGGTTCTATGTCGCCCACAAAGACGTTTCCATGCCTCAAGTCTGGCCTCGCCCGCCTCAGCAAACCCTCAATCCCCCGAAACTGAGGGACAAGCTTGTGTTCTTTGCTGGGCGGGTTCAAAACTCGATTGTGAGGCAGCAGCTAGTGGATTTATGGGGCAACGACACTCACATGGACATCTTCTCCGAGAACCCATCCTATCCTTATGAAGAAGGGTTTAAGAGGAGCAAGTATTGCCTCCATGTTAAGGGCTATGAGGTGAACACTGCCAGGGTCAGTGATGCTATACACTATGGGTGTGTCCCTGTTATAATGTCGAATTACTATGAGCTTCCTTTCGCTAGTGTGTTGAACTGGACCACATTTTCGGTCATCATTAACCACAATGAGGCTGCTTCGTTGAAGAAGACGTTGCTGTCGATAACAAAGAAGACTTACCTGAACATGTACCGGAATTTGTTGAGCGTCAGAAGGCACTTTGTTTGGCACAAGACTCCCAAGGGATATGATTCCTTCCACATGACTGCTTACCAGTTGTGGCTCAAAAGAGGGTCGCAGCGTCCATCTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0032787 GO:0034641 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046394 GO:0046983 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

418

Amino Acids

48.65

Weight (kDa)

9.5

Isoelectric Point (pI)

58.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	89 - 366	1.2e-51	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03667 AT2G03667
fragaria_vesca	FvH4_4g29880 FvH4_4g29880 FvH4_4g29880 FvH4_4g29880 FvH4_4g29880 FvH4_4g29880 FvH4_4g29880 FvH4_4g29880
malus_domestica	MD13G1061700.v1.1 MD16G1060200.v1.1
prunus_persica	Prupe.1G288300_v2.0.a1 Prupe.1G288300_v2.0.a1 Prupe.1G288300_v2.0.a1 Prupe.1G288300_v2.0.a1
pyrus_communis	pycom16g05240
rosa_chinensis	RchiOBHm_Chr4g0438141
rosa_laevigata	RLG00000006385
rosa_multiflora	Rmu_sc0004728.1_g000004 Rmu_sc0020161.1_g000004
rosa_roxburghii	Rroxscaffold_5G00379270
rosa_rugosa	Rorug04G0307300 Rorug04G0307400 Rorug04G0307500 Rorug04G0307600 Rorug04G0307700
rosa_samantha	Rh4AG358800 Rh4BG369700 Rh4CG383800 Rh4DG364600
rosa_wichuraiana	Rw0G006330 Rw0G016270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	995
AasI	GACNNNNNNGTC	2 cut(s)	482, 1099
Acc16I	TGCGCA	1 cut(s)	641
AccI	GTMKAC	1 cut(s)	285
AccIII	TCCGGA	1 cut(s)	264
AciI	CCGC	4 cut(s)	154, 243, 737, 796
AclWI	GGATC	3 cut(s)	21, 256, 585
AcsI	RAATTY	2 cut(s)	509, 1138
AcuI	CTGAAG	4 cut(s)	83, 101, 349, 444
AfaI	GTAC	3 cut(s)	59, 412, 1133
AfiI	CCNNNNNNNGG	6 cut(s)	103, 352, 353, 493, 931, 1072
AflIII	ACRYGT	2 cut(s)	375, 1128
AgsI	TTSAA	8 cut(s)	213, 232, 253, 274, 382, 803, 1036, 1087
AjnI	CCWGG	1 cut(s)	953
AjuI	GAANNNNNNNTTGG	2 cut(s)	472, 504
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	3 cut(s)	21, 256, 585
Aor13HI	TCCGGA	1 cut(s)	264
AoxI	GGCC	3 cut(s)	71, 615, 728
ApeKI	GCWGC	6 cut(s)	116, 594, 820, 823, 1076, 1240
ApoI	RAATTY	2 cut(s)	509, 1138
ArsI	GACNNNNNNTTYG	2 cut(s)	1033, 1065
AspLEI	GCGC	1 cut(s)	642
AspS9I	GGNCC	3 cut(s)	72, 484, 1041
AsuHPI	GGTGA	2 cut(s)	180, 955
AvaII	GGWCC	2 cut(s)	484, 1041
BanII	GRGCYC	1 cut(s)	404
BbsI	GAAGAC	3 cut(s)	85, 1097, 1121
BbvCI	CCTCAGC	1 cut(s)	741
BbvI	GCAGC	6 cut(s)	128, 581, 832, 835, 1063, 1252
BccI	CCATC	2 cut(s)	886, 1255
BceAI	ACGGC	1 cut(s)	433
BcgI	CGANNNNNNTGC	2 cut(s)	105, 139
BciT130I	CCWGG	1 cut(s)	955
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	3 cut(s)	827, 1026, 1255
BglII	AGATCT	1 cut(s)	276
BisI	GCNGC	7 cut(s)	117, 243, 595, 821, 824, 1077, 1241
BlsI	GCNGC	7 cut(s)	118, 244, 596, 822, 825, 1078, 1242
Bme1390I	CCNGG	1 cut(s)	955
Bme18I	GGWCC	2 cut(s)	484, 1041
BmgT120I	GGNCC	3 cut(s)	72, 484, 1041
BmiI	GGNNCC	1 cut(s)	485
BmrFI	CCNGG	1 cut(s)	955
BmsI	GCATC	2 cut(s)	487, 955
BpiI	GAAGAC	3 cut(s)	85, 1097, 1121
BpmI	CTGGAG	1 cut(s)	655
Bpu10I	CCTNAGC	1 cut(s)	741
BpuEI	CTTGAG	3 cut(s)	199, 416, 705
BsaJI	CCNNGG	6 cut(s)	479, 541, 567, 618, 954, 1182
BsaWI	WCCGGW	2 cut(s)	264, 1134
BsaXI	ACNNNNNCTCC	2 cut(s)	851, 881
Bsc4I	CCNNNNNNNGG	6 cut(s)	103, 352, 353, 493, 931, 1072
Bse1I	ACTGG	2 cut(s)	1043, 1216
Bse3DI	GCAATG	1 cut(s)	108
BseAI	TCCGGA	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	955
BseDI	CCNNGG	6 cut(s)	479, 541, 567, 618, 954, 1182
BseGI	GGATG	2 cut(s)	502, 878
BseLI	CCNNNNNNNGG	6 cut(s)	103, 352, 353, 493, 931, 1072
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	4 cut(s)	326, 421, 755, 758
BseNI	ACTGG	2 cut(s)	1043, 1216
BseRI	GAGGAG	4 cut(s)	112, 140, 658, 922
BseXI	GCAGC	6 cut(s)	128, 581, 832, 835, 1063, 1252
BseYI	CCCAGC	1 cut(s)	791
BshFI	GGCC	3 cut(s)	73, 617, 730
BsiSI	CCGG	2 cut(s)	265, 1135
BslFI	GGGAC	2 cut(s)	785, 971
BslI	CCNNNNNNNGG	6 cut(s)	103, 352, 353, 493, 931, 1072
BsmAI	GTCTC	1 cut(s)	188
BsmFI	GGGAC	2 cut(s)	785, 971
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	3 cut(s)	73, 617, 730
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp13I	TCCGGA	1 cut(s)	264
Bsp143I	GATC	5 cut(s)	13, 261, 276, 433, 577
Bsp19I	CCATGG	2 cut(s)	567, 618
BspACI	CCGC	4 cut(s)	154, 243, 737, 796
BspANI	GGCC	3 cut(s)	73, 617, 730
BspCNI	CTCAG	4 cut(s)	325, 420, 754, 759
BspEI	TCCGGA	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	485
BspPI	GGATC	3 cut(s)	21, 256, 585
BspQI	GCTCTTC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	108
BsrI	ACTGG	2 cut(s)	1043, 1216
BssECI	CCNNGG	6 cut(s)	479, 541, 567, 618, 954, 1182
BssMI	GATC	5 cut(s)	13, 261, 276, 433, 577
BssT1I	CCWWGG	5 cut(s)	479, 541, 567, 618, 1182
Bst2UI	CCWGG	1 cut(s)	955
Bst6I	CTCTTC	1 cut(s)	242
BstAPI	GCANNNNNTGC	1 cut(s)	918
BstC8I	GCNNGC	3 cut(s)	387, 592, 737
BstDEI	CTNAG	5 cut(s)	17, 312, 407, 741, 767
BstDSI	CCRYGG	2 cut(s)	567, 618
BstF5I	GGATG	2 cut(s)	502, 878
BstHHI	GCGC	1 cut(s)	642
BstKTI	GATC	5 cut(s)	16, 264, 279, 436, 580
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	5 cut(s)	13, 261, 276, 433, 577
BstMWI	GCNNNNNNNGC	4 cut(s)	391, 672, 736, 918
BstNI	CCWGG	1 cut(s)	955
BstNSI	RCATGY	2 cut(s)	379, 1132
BstSCI	CCNGG	1 cut(s)	953
BstV1I	GCAGC	6 cut(s)	128, 581, 832, 835, 1063, 1252
BstV2I	GAAGAC	3 cut(s)	85, 1097, 1121
BstX2I	RGATCY	2 cut(s)	13, 276
BstXI	CCANNNNNNTGG	1 cut(s)	574
BstYI	RGATCY	2 cut(s)	13, 276
BsuRI	GGCC	3 cut(s)	73, 617, 730
BtgI	CCRYGG	2 cut(s)	567, 618
BtsCI	GGATG	2 cut(s)	502, 878
BtsI	GCAGTG	1 cut(s)	948
BtsIMutI	CAGTG	3 cut(s)	373, 948, 967
Cac8I	GCNNGC	3 cut(s)	387, 592, 737
CfoI	GCGC	1 cut(s)	642
Cfr13I	GGNCC	3 cut(s)	72, 484, 1041
CseI	GACGC	2 cut(s)	1138, 1232
Csp6I	GTAC	3 cut(s)	58, 411, 1132
CspCI	CAANNNNNGTGG	2 cut(s)	587, 622
CviQI	GTAC	3 cut(s)	58, 411, 1132
DdeI	CTNAG	5 cut(s)	17, 312, 407, 741, 767
DpnI	GATC	5 cut(s)	15, 263, 278, 435, 579
DpnII	GATC	5 cut(s)	13, 261, 276, 433, 577
DrdI	GACNNNNNNGTC	2 cut(s)	482, 1099
DseDI	GACNNNNNNGTC	2 cut(s)	482, 1099
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
Eco130I	CCWWGG	5 cut(s)	479, 541, 567, 618, 1182
Eco24I	GRGCYC	1 cut(s)	404
Eco47I	GGWCC	2 cut(s)	484, 1041
Eco57I	CTGAAG	4 cut(s)	83, 101, 349, 444
EcoRII	CCWGG	1 cut(s)	953
EcoT14I	CCWWGG	5 cut(s)	479, 541, 567, 618, 1182
EcoT38I	GRGCYC	1 cut(s)	404
ErhI	CCWWGG	5 cut(s)	479, 541, 567, 618, 1182
FaqI	GGGAC	2 cut(s)	785, 971
FauI	CCCGC	2 cut(s)	744, 789
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	7 cut(s)	117, 243, 595, 821, 824, 1077, 1241
FokI	GGATG	2 cut(s)	509, 865
FriOI	GRGCYC	1 cut(s)	404
Fsp4HI	GCNGC	7 cut(s)	117, 243, 595, 821, 824, 1077, 1241
FspBI	CTAG	3 cut(s)	827, 1026, 1255
FspI	TGCGCA	1 cut(s)	641
GlaI	GCGC	1 cut(s)	641
GluI	GCNGC	7 cut(s)	117, 243, 595, 821, 824, 1077, 1241
GsaI	CCCAGC	1 cut(s)	795
GsuI	CTGGAG	1 cut(s)	655
HaeIII	GGCC	3 cut(s)	73, 617, 730
HapII	CCGG	2 cut(s)	265, 1135
HgaI	GACGC	2 cut(s)	1138, 1232
HhaI	GCGC	1 cut(s)	642
Hin6I	GCGC	1 cut(s)	640
HinP1I	GCGC	1 cut(s)	640
HindIII	AAGCTT	2 cut(s)	45, 776
HinfI	GANTC	4 cut(s)	181, 209, 1177, 1193
HpaII	CCGG	2 cut(s)	265, 1135
HphI	GGTGA	2 cut(s)	180, 955
Hpy166II	GTNNAC	3 cut(s)	286, 371, 946
Hpy188I	TCNGA	8 cut(s)	208, 315, 470, 493, 508, 684, 871, 1154
Hpy188III	TCNNGA	4 cut(s)	265, 274, 422, 556
Hpy8I	GTNNAC	3 cut(s)	286, 371, 946
HpyAV	CCTTC	3 cut(s)	890, 1149, 1207
HpyCH4IV	ACGT	3 cut(s)	282, 708, 1094
HpyCH4V	TGCA	2 cut(s)	101, 609
HpyF10VI	GCNNNNNNNGC	4 cut(s)	391, 672, 736, 918
HpyF3I	CTNAG	5 cut(s)	17, 312, 407, 741, 767
HpySE526I	ACGT	3 cut(s)	282, 708, 1094
HspAI	GCGC	1 cut(s)	640
Kpn2I	TCCGGA	1 cut(s)	264
Kzo9I	GATC	5 cut(s)	13, 261, 276, 433, 577
LguI	GCTCTTC	1 cut(s)	242
LmnI	GCTCC	3 cut(s)	267, 671, 909
Lsp1109I	GCAGC	6 cut(s)	128, 581, 832, 835, 1063, 1252
LweI	GCATC	2 cut(s)	487, 955
MaeI	CTAG	3 cut(s)	827, 1026, 1255
MaeII	ACGT	3 cut(s)	282, 708, 1094
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	5 cut(s)	15, 263, 278, 435, 579
MboI	GATC	5 cut(s)	13, 261, 276, 433, 577
MflI	RGATCY	2 cut(s)	13, 276
MhlI	GDGCHC	1 cut(s)	404
MluCI	AATT	4 cut(s)	295, 509, 1003, 1138
MlyI	GAGTC	2 cut(s)	190, 1171
MmeI	TCCRAC	1 cut(s)	198
MroI	TCCGGA	1 cut(s)	264
MseI	TTAA	3 cut(s)	903, 930, 1062
MslI	CAYNNNNRTG	3 cut(s)	38, 585, 854
MspI	CCGG	2 cut(s)	265, 1135
MspR9I	CCNGG	1 cut(s)	955
Mva1269I	GAATGC	1 cut(s)	565
MvaI	CCWGG	1 cut(s)	955
MwoI	GCNNNNNNNGC	4 cut(s)	391, 672, 736, 918
NcoI	CCATGG	2 cut(s)	567, 618
NdeII	GATC	5 cut(s)	13, 261, 276, 433, 577
NlaIV	GGNNCC	1 cut(s)	485
NsbI	TGCGCA	1 cut(s)	641
NspI	RCATGY	2 cut(s)	379, 1132
PciI	ACATGT	2 cut(s)	375, 1128
PciSI	GCTCTTC	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	1 cut(s)	1100
PctI	GAATGC	1 cut(s)	565
PfeI	GAWTC	2 cut(s)	209, 1193
PkrI	GCNGC	7 cut(s)	118, 244, 596, 822, 825, 1078, 1242
PleI	GAGTC	2 cut(s)	189, 1171
PpsI	GAGTC	2 cut(s)	189, 1171
PscI	ACATGT	2 cut(s)	375, 1128
PsiI	TTATAA	1 cut(s)	995
Psp6I	CCWGG	1 cut(s)	953
PspFI	CCCAGC	1 cut(s)	791
PspGI	CCWGG	1 cut(s)	953
PspN4I	GGNNCC	1 cut(s)	485
PspPI	GGNCC	3 cut(s)	72, 484, 1041
PsuI	RGATCY	2 cut(s)	13, 276
RsaI	GTAC	3 cut(s)	59, 412, 1133
RsaNI	GTAC	3 cut(s)	58, 411, 1132
RseI	CAYNNNNRTG	3 cut(s)	38, 585, 854
SapI	GCTCTTC	1 cut(s)	242
SaqAI	TTAA	3 cut(s)	903, 930, 1062
SatI	GCNGC	7 cut(s)	117, 243, 595, 821, 824, 1077, 1241
Sau3AI	GATC	5 cut(s)	13, 261, 276, 433, 577
Sau96I	GGNCC	3 cut(s)	72, 484, 1041
SchI	GAGTC	2 cut(s)	190, 1171
ScrFI	CCNGG	1 cut(s)	955
SduI	GDGCHC	1 cut(s)	404
SfaNI	GCATC	2 cut(s)	487, 955
SinI	GGWCC	2 cut(s)	484, 1041
SmiMI	CAYNNNNRTG	3 cut(s)	38, 585, 854
SmlI	CTYRAG	3 cut(s)	178, 395, 720
SmoI	CTYRAG	3 cut(s)	178, 395, 720
Sse9I	AATT	4 cut(s)	295, 509, 1003, 1138
SsiI	CCGC	4 cut(s)	154, 243, 737, 796
SspMI	CTAG	3 cut(s)	827, 1026, 1255
StyD4I	CCNGG	1 cut(s)	953
StyI	CCWWGG	5 cut(s)	479, 541, 567, 618, 1182
TaiI	ACGT	3 cut(s)	285, 711, 1097
TaqI	TCGA	5 cut(s)	321, 342, 809, 1001, 1103
TaqII	GACCGA	2 cut(s)	445, 1042
TasI	AATT	4 cut(s)	295, 509, 1003, 1138
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	2 cut(s)	209, 1193
Tru1I	TTAA	3 cut(s)	903, 930, 1062
Tru9I	TTAA	3 cut(s)	903, 930, 1062
TscAI	CASTG	3 cut(s)	373, 955, 967
TseI	GCWGC	6 cut(s)	116, 594, 820, 823, 1076, 1240
TspDTI	ATGAA	3 cut(s)	56, 288, 906
TspRI	CASTG	3 cut(s)	373, 955, 967
VpaK11BI	GGWCC	2 cut(s)	484, 1041
XapI	RAATTY	2 cut(s)	509, 1138
XceI	RCATGY	2 cut(s)	379, 1132
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	3 cut(s)	827, 1026, 1255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.