Rorug04G0307700

Asparagine synthetase domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
48336003 .. 48339385
3383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0307700.1

Sequence Viewer

Length: 1308 bp
ATGGCTACCTGGGTTAGGAGTGCACAGCTTCATTCTTATCCTTCTCTTCATCCCCATCAATCTTTGAAGAAGATTCAACAGCAAAGTCATTTTATCAGCCTACCCAATTCTCATCGTCATCTTCGGGGAAGAGTCTTCTGTAACTTTGATGATGAAGCCACCAAGAAACAATCTCAGCCGCAACCAACTGGGATTCAACTCTACTCTGAGATTGAGAGGTTACTTACTGAGACTGTGAGGCAATCCCAGAGTGGTTGGAATGGTTCGAGTGACTGGAGTCAGATAGAGGGAGCATGGGTTCTGAAACCGAAAACCTTGAAACCCACGGCAGTTGTACATTTTATTGGTGGTATATTTGTTGGAGCTGCCCCTCAGCTCACCTACCGTTTCTTTCTTGAGCGACTAGCAGAGAAGGGAATTTTGGTGATTGCAACACCATATGCTAGTGGGTTTGATCACTTCTTCATTGCAGATGAAGTTCAATTCAAATTTGATCGTTGTTATCGGTTTCTCAAAGACACGATTGAAGATCTTCCTATTTTCGGCGTTGGTCATTCTTTGGGATCTGTCATCCACCTTTTGATTGGTTCGAGATATGCTATTCAAAGAAATGGGAATGTGTTGATGGCATTCAACAACAGGGAGGCGAGCTCCGCTGTTCCTATATTCTCACCTGTTCTTGTTCCAGTCGCCCAAAGCCTGGGACCAATTTTAACACAGATCGCATCATCACCAACATTTCGACTAGGGGCTGAAATGACTCTCAGGCAATTTGAAAACCTTAGCCCTCCCATCATGAAGCAAGTTATGCCTTTAGTGGAGCAGCTCCCACCCTTGTATATGGATTTAGTCAATGGAAGAGAAGATTTTGCTCCAAAACCTGAAGAGACTCGGCGACTTATAAAATCATACTACGGTATTTCCAGGAATCTTCTAGTGAGGTTCAAGGATGATACAATTGATGAGACTTCAGTATTAGCACAGTTGCTAAGTTCAGATTCAGCCATAAGCACTATGCTAGACATGTCAACTCGCCTATTGCCCGGAGATCACGCACTTCCTTTGCAACAGGCTATACCAGATGTGCCTCCAGCAATGGCAGATGCAGTAAATCGCGGGAGTGAGATGTTGGCCAATCTCACTGTGGGAACGCCATGGGAGTCTGTTGCTAAAGAAATGGGCAACTCATTAGGCGTAGACTCAACAAAGATCCTTCGTGCAGAAGTGTCCAAAGACCTAGACCTTCTTGTGAATGTTATTGCATCTTGGATGGCTTCCAATACAGGTCCAAGGCTTTTGAAGCCATGA

Protein Analysis

435

Amino Acids

48.4

Weight (kDa)

7.2

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1350 PF07082 91 - 359 1.5e-55 Protein of unknown function (DUF1350)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 902
AccB7I CCANNNNNTGG 1 cut(s) 700
AccI GTMKAC 1 cut(s) 1197
AccII CGCG 1 cut(s) 1116
AciI CCGC 3 cut(s) 179, 654, 1116
AclWI GGATC 2 cut(s) 571, 1204
AcoI YGGCCR 1 cut(s) 1131
AcsI RAATTY 2 cut(s) 417, 488
AcuI CTGAAG 2 cut(s) 903, 954
AfaI GTAC 1 cut(s) 336
AfiI CCNNNNNNNGG 3 cut(s) 15, 542, 700
AflIII ACRYGT 1 cut(s) 1023
AjnI CCWGG 3 cut(s) 8, 699, 923
AjuI GAANNNNNNNTTGG 2 cut(s) 404, 436
AloI GAACNNNNNNTCC 2 cut(s) 282, 314
AluBI AGCT 5 cut(s) 28, 365, 376, 651, 826
AluI AGCT 5 cut(s) 28, 365, 376, 651, 826
Alw21I GWGCWC 2 cut(s) 25, 653
Alw26I GTCTC 3 cut(s) 224, 881, 959
Alw44I GTGCAC 1 cut(s) 21
AlwI GGATC 2 cut(s) 571, 1204
AoxI GGCC 1 cut(s) 1131
ApaLI GTGCAC 1 cut(s) 21
ApeKI GCWGC 2 cut(s) 365, 823
ApoI RAATTY 2 cut(s) 417, 488
Asp700I GAANNNNTTC 1 cut(s) 531
AspS9I GGNCC 2 cut(s) 704, 1286
AsuC2I CCSGG 1 cut(s) 1044
AsuHPI GGTGA 4 cut(s) 370, 436, 663, 723
AvaII GGWCC 2 cut(s) 704, 1286
BaeGI GKGCMC 1 cut(s) 25
BalI TGGCCA 1 cut(s) 1133
BanII GRGCYC 1 cut(s) 653
BbsI GAAGAC 1 cut(s) 127
Bbv12I GWGCWC 2 cut(s) 25, 653
BbvCI CCTCAGC 1 cut(s) 372
BbvI GCAGC 2 cut(s) 352, 835
BccI CCATC 4 cut(s) 63, 619, 800, 1264
BceAI ACGGC 1 cut(s) 342
BciT130I CCWGG 3 cut(s) 10, 701, 925
BclI TGATCA 1 cut(s) 454
BcnI CCSGG 1 cut(s) 1044
BcoDI GTCTC 3 cut(s) 224, 881, 959
BfaI CTAG 6 cut(s) 404, 444, 746, 935, 1019, 1238
BglII AGATCT 1 cut(s) 529
BisI GCNGC 3 cut(s) 179, 366, 824
BlsI GCNGC 3 cut(s) 180, 367, 825
Bme1390I CCNGG 4 cut(s) 10, 701, 925, 1044
Bme18I GGWCC 2 cut(s) 704, 1286
BmgT120I GGNCC 2 cut(s) 704, 1286
BmiI GGNNCC 1 cut(s) 705
BmrFI CCNGG 4 cut(s) 10, 701, 925, 1044
BmrI ACTGGG 1 cut(s) 198
BmsI GCATC 3 cut(s) 734, 1093, 1271
BmuI ACTGGG 1 cut(s) 198
BoxI GACNNNNGTC 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 127
BplI GAGNNNNNCTC 2 cut(s) 635, 667
BpmI CTGGAG 2 cut(s) 295, 1074
Bpu10I CCTNAGC 2 cut(s) 372, 782
BpuEI CTTGAG 1 cut(s) 416
BpuMI CCSGG 1 cut(s) 1044
BsaJI CCNNGG 5 cut(s) 9, 324, 700, 1154, 1289
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 542, 700
Bse1I ACTGG 3 cut(s) 193, 278, 686
Bse3DI GCAATG 2 cut(s) 465, 1101
BseBI CCWGG 3 cut(s) 10, 701, 925
BseDI CCNNGG 5 cut(s) 9, 324, 700, 1154, 1289
BseGI GGATG 4 cut(s) 49, 570, 955, 1275
BseLI CCNNNNNNNGG 3 cut(s) 15, 542, 700
BseMI GCAATG 2 cut(s) 465, 1101
BseMII CTCAG 5 cut(s) 188, 198, 219, 386, 778
BseNI ACTGG 3 cut(s) 193, 278, 686
BseSI GKGCMC 1 cut(s) 25
BseXI GCAGC 2 cut(s) 352, 835
BsgI GTGCAG 1 cut(s) 1239
Bsh1236I CGCG 1 cut(s) 1116
BshFI GGCC 1 cut(s) 1133
BsiHKAI GWGCWC 2 cut(s) 25, 653
BsiSI CCGG 1 cut(s) 1044
BslFI GGGAC 1 cut(s) 717
BslI CCNNNNNNNGG 3 cut(s) 15, 542, 700
BsmAI GTCTC 3 cut(s) 224, 881, 959
BsmFI GGGAC 1 cut(s) 717
BsmI GAATGC 1 cut(s) 629
BsnI GGCC 1 cut(s) 1133
Bsp1286I GDGCHC 2 cut(s) 25, 653
Bsp1407I TGTACA 1 cut(s) 334
Bsp143I GATC 7 cut(s) 454, 493, 529, 563, 720, 1048, 1209
Bsp19I CCATGG 1 cut(s) 1154
BspACI CCGC 3 cut(s) 179, 654, 1116
BspANI GGCC 1 cut(s) 1133
BspCNI CTCAG 5 cut(s) 187, 199, 220, 385, 777
BspFNI CGCG 1 cut(s) 1116
BspHI TCATGA 1 cut(s) 795
BspLI GGNNCC 1 cut(s) 705
BspPI GGATC 2 cut(s) 571, 1204
BsrDI GCAATG 2 cut(s) 465, 1101
BsrGI TGTACA 1 cut(s) 334
BsrI ACTGG 3 cut(s) 193, 278, 686
BssECI CCNNGG 5 cut(s) 9, 324, 700, 1154, 1289
BssMI GATC 7 cut(s) 454, 493, 529, 563, 720, 1048, 1209
BssT1I CCWWGG 2 cut(s) 1154, 1289
Bst2UI CCWGG 3 cut(s) 10, 701, 925
Bst4CI ACNGT 5 cut(s) 235, 386, 917, 984, 1144
Bst6I CTCTTC 4 cut(s) 51, 124, 853, 879
BstAPI GCANNNNNTGC 1 cut(s) 808
BstAUI TGTACA 1 cut(s) 334
BstC8I GCNNGC 1 cut(s) 649
BstDEI CTNAG 7 cut(s) 174, 207, 228, 372, 764, 782, 989
BstDSI CCRYGG 2 cut(s) 324, 1154
BstENI CCTNNNNNAGG 1 cut(s) 13
BstF5I GGATG 4 cut(s) 49, 570, 955, 1275
BstFNI CGCG 1 cut(s) 1116
BstKTI GATC 7 cut(s) 457, 496, 532, 566, 723, 1051, 1212
BstMAI GTCTC 3 cut(s) 224, 881, 959
BstMBI GATC 7 cut(s) 454, 493, 529, 563, 720, 1048, 1209
BstMWI GCNNNNNNNGC 3 cut(s) 653, 808, 1300
BstNI CCWGG 3 cut(s) 10, 701, 925
BstNSI RCATGY 1 cut(s) 1027
BstPAI GACNNNNGTC 1 cut(s) 276
BstSCI CCNGG 4 cut(s) 8, 699, 923, 1042
BstSLI GKGCMC 1 cut(s) 25
BstUI CGCG 1 cut(s) 1116
BstV1I GCAGC 2 cut(s) 352, 835
BstV2I GAAGAC 1 cut(s) 127
BstX2I RGATCY 3 cut(s) 529, 563, 1209
BstYI RGATCY 3 cut(s) 529, 563, 1209
BsuRI GGCC 1 cut(s) 1133
BtgI CCRYGG 2 cut(s) 324, 1154
BtsCI GGATG 4 cut(s) 49, 570, 955, 1275
BtsIMutI CAGTG 1 cut(s) 1140
Cac8I GCNNGC 1 cut(s) 649
CciI TCATGA 1 cut(s) 795
Cfr13I GGNCC 2 cut(s) 704, 1286
Csp6I GTAC 1 cut(s) 335
CspCI CAANNNNNGTGG 2 cut(s) 313, 348
CviAII CATG 5 cut(s) 294, 796, 1024, 1155, 1305
CviQI GTAC 1 cut(s) 335
DdeI CTNAG 7 cut(s) 174, 207, 228, 372, 764, 782, 989
DpnI GATC 7 cut(s) 456, 495, 531, 565, 722, 1050, 1211
DpnII GATC 7 cut(s) 454, 493, 529, 563, 720, 1048, 1209
EaeI YGGCCR 1 cut(s) 1131
Eam1104I CTCTTC 4 cut(s) 51, 124, 853, 879
EarI CTCTTC 4 cut(s) 51, 124, 853, 879
Ecl136II GAGCTC 1 cut(s) 651
Eco130I CCWWGG 2 cut(s) 1154, 1289
Eco24I GRGCYC 1 cut(s) 653
Eco47I GGWCC 2 cut(s) 704, 1286
Eco53kI GAGCTC 1 cut(s) 651
Eco57I CTGAAG 2 cut(s) 903, 954
EcoICRI GAGCTC 1 cut(s) 651
EcoNI CCTNNNNNAGG 1 cut(s) 13
EcoRII CCWGG 3 cut(s) 8, 699, 923
EcoT14I CCWWGG 2 cut(s) 1154, 1289
EcoT38I GRGCYC 1 cut(s) 653
ErhI CCWWGG 2 cut(s) 1154, 1289
FaeI CATG 5 cut(s) 297, 799, 1027, 1158, 1308
FaqI GGGAC 1 cut(s) 717
FatI CATG 5 cut(s) 293, 795, 1023, 1154, 1304
FauI CCCGC 1 cut(s) 1109
FauNDI CATATG 1 cut(s) 439
FbaI TGATCA 1 cut(s) 454
FblI GTMKAC 1 cut(s) 1197
Fnu4HI GCNGC 3 cut(s) 179, 366, 824
FokI GGATG 4 cut(s) 36, 557, 962, 1282
FriOI GRGCYC 1 cut(s) 653
Fsp4HI GCNGC 3 cut(s) 179, 366, 824
FspBI CTAG 6 cut(s) 404, 444, 746, 935, 1019, 1238
GluI GCNGC 3 cut(s) 179, 366, 824
GsuI CTGGAG 2 cut(s) 295, 1074
HaeIII GGCC 1 cut(s) 1133
HapII CCGG 1 cut(s) 1044
Hin1II CATG 5 cut(s) 297, 799, 1027, 1158, 1308
HincII GTYRAC 1 cut(s) 1029
HindII GTYRAC 1 cut(s) 1029
HpaII CCGG 1 cut(s) 1044
HphI GGTGA 4 cut(s) 370, 436, 663, 723
Hpy166II GTNNAC 3 cut(s) 23, 1029, 1198
Hpy188I TCNGA 4 cut(s) 208, 282, 303, 997
Hpy188III TCNNGA 3 cut(s) 395, 591, 796
Hpy8I GTNNAC 3 cut(s) 23, 1029, 1198
HpyAV CCTTC 4 cut(s) 51, 406, 1223, 1253
HpyCH4III ACNGT 5 cut(s) 235, 386, 917, 984, 1144
HpyCH4V TGCA 7 cut(s) 23, 431, 470, 1066, 1106, 1220, 1262
HpyF10VI GCNNNNNNNGC 3 cut(s) 653, 808, 1300
HpyF3I CTNAG 7 cut(s) 174, 207, 228, 372, 764, 782, 989
Hsp92II CATG 5 cut(s) 297, 799, 1027, 1158, 1308
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 7 cut(s) 454, 493, 529, 563, 720, 1048, 1209
LmnI GCTCC 6 cut(s) 290, 362, 656, 820, 831, 877
Lsp1109I GCAGC 2 cut(s) 352, 835
LweI GCATC 3 cut(s) 734, 1093, 1271
MaeI CTAG 6 cut(s) 404, 444, 746, 935, 1019, 1238
MaeIII GTNAC 3 cut(s) 140, 219, 269
MalI GATC 7 cut(s) 456, 495, 531, 565, 722, 1050, 1211
MboI GATC 7 cut(s) 454, 493, 529, 563, 720, 1048, 1209
MfeI CAATTG 1 cut(s) 957
MflI RGATCY 3 cut(s) 529, 563, 1209
MhlI GDGCHC 2 cut(s) 25, 653
MlsI TGGCCA 1 cut(s) 1133
MluCI AATT 7 cut(s) 106, 417, 482, 488, 708, 770, 957
MluNI TGGCCA 1 cut(s) 1133
MlyI GAGTC 6 cut(s) 141, 286, 754, 883, 1169, 1193
MmeI TCCRAC 2 cut(s) 236, 340
MnlI CCTC 8 cut(s) 210, 231, 280, 381, 637, 798, 933, 1098
Mox20I TGGCCA 1 cut(s) 1133
MroXI GAANNNNTTC 1 cut(s) 531
MscI TGGCCA 1 cut(s) 1133
MseI TTAA 1 cut(s) 713
Msp20I TGGCCA 1 cut(s) 1133
MspA1I CMGCKG 1 cut(s) 656
MspI CCGG 1 cut(s) 1044
MspR9I CCNGG 4 cut(s) 10, 701, 925, 1044
MunI CAATTG 1 cut(s) 957
Mva1269I GAATGC 1 cut(s) 629
MvaI CCWGG 3 cut(s) 10, 701, 925
MvnI CGCG 1 cut(s) 1116
MwoI GCNNNNNNNGC 3 cut(s) 653, 808, 1300
NciI CCSGG 1 cut(s) 1044
NcoI CCATGG 1 cut(s) 1154
NdeI CATATG 1 cut(s) 439
NdeII GATC 7 cut(s) 454, 493, 529, 563, 720, 1048, 1209
NlaIII CATG 5 cut(s) 297, 799, 1027, 1158, 1308
NlaIV GGNNCC 1 cut(s) 705
NmeAIII GCCGAG 1 cut(s) 871
NmuCI GTSAC 1 cut(s) 269
NspI RCATGY 1 cut(s) 1027
PagI TCATGA 1 cut(s) 795
PciI ACATGT 1 cut(s) 1023
PctI GAATGC 1 cut(s) 629
PdmI GAANNNNTTC 1 cut(s) 531
PfeI GAWTC 4 cut(s) 73, 193, 928, 998
PflMI CCANNNNNTGG 1 cut(s) 700
PfoI TCCNGGA 1 cut(s) 923
PkrI GCNGC 3 cut(s) 180, 367, 825
PleI GAGTC 6 cut(s) 140, 285, 754, 883, 1168, 1193
PpsI GAGTC 6 cut(s) 140, 285, 754, 883, 1168, 1193
PscI ACATGT 1 cut(s) 1023
PshAI GACNNNNGTC 1 cut(s) 276
PsiI TTATAA 1 cut(s) 902
Psp124BI GAGCTC 1 cut(s) 653
Psp6I CCWGG 3 cut(s) 8, 699, 923
PspGI CCWGG 3 cut(s) 8, 699, 923
PspN4I GGNNCC 1 cut(s) 705
PspPI GGNCC 2 cut(s) 704, 1286
PsuI RGATCY 3 cut(s) 529, 563, 1209
RsaI GTAC 1 cut(s) 336
RsaNI GTAC 1 cut(s) 335
SacI GAGCTC 1 cut(s) 653
SaqAI TTAA 1 cut(s) 713
SatI GCNGC 3 cut(s) 179, 366, 824
Sau3AI GATC 7 cut(s) 454, 493, 529, 563, 720, 1048, 1209
Sau96I GGNCC 2 cut(s) 704, 1286
SchI GAGTC 6 cut(s) 141, 286, 754, 883, 1169, 1193
ScrFI CCNGG 4 cut(s) 10, 701, 925, 1044
SduI GDGCHC 2 cut(s) 25, 653
SfaNI GCATC 3 cut(s) 734, 1093, 1271
SinI GGWCC 2 cut(s) 704, 1286
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 7 cut(s) 106, 417, 482, 488, 708, 770, 957
SsiI CCGC 3 cut(s) 179, 654, 1116
SspMI CTAG 6 cut(s) 404, 444, 746, 935, 1019, 1238
SstI GAGCTC 1 cut(s) 653
StyD4I CCNGG 4 cut(s) 8, 699, 923, 1042
StyI CCWWGG 2 cut(s) 1154, 1289
TaaI ACNGT 5 cut(s) 235, 386, 917, 984, 1144
TaqI TCGA 3 cut(s) 266, 590, 742
TasI AATT 7 cut(s) 106, 417, 482, 488, 708, 770, 957
TatI WGTACW 1 cut(s) 334
TauI GCSGC 1 cut(s) 181
TfiI GAWTC 4 cut(s) 73, 193, 928, 998
Tru1I TTAA 1 cut(s) 713
Tru9I TTAA 1 cut(s) 713
TscAI CASTG 1 cut(s) 1147
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 2 cut(s) 365, 823
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 6 cut(s) 20, 38, 168, 454, 489, 812
TspRI CASTG 1 cut(s) 1147
Van91I CCANNNNNTGG 1 cut(s) 700
VneI GTGCAC 1 cut(s) 21
VpaK11BI GGWCC 2 cut(s) 704, 1286
XagI CCTNNNNNAGG 1 cut(s) 13
XapI RAATTY 2 cut(s) 417, 488
XceI RCATGY 1 cut(s) 1027
XcmI CCANNNNNNNNNTGG 2 cut(s) 581, 1141
XmiI GTMKAC 1 cut(s) 1197
XmnI GAANNNNTTC 1 cut(s) 531
XspI CTAG 6 cut(s) 404, 444, 746, 935, 1019, 1238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.