Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005392

Physical Location & Seq

Genomic Coordinates Forward (+)

502981 .. 504096

Gene Structure 1116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0006500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTTAATAAGACTTCTCCCACCTTTGAGCTCCAGTTTGACGGCAACTACTGGGCCACCGTTAACAAACCCAATATTGTTTCTTATGAGGCAATCTATGTTGCCAAGCAGAATACGACTAGCATATGTCTTGCTCGAATTGAAGATGATCAGATCCCATTCATTTCTGCACTCGAAATTCGAAGATTGGATTTCAAAATATACAGCCATGTCGATCCCAAGTATGCTCTTCTGTTGGCAAATAGGTTTTATGATGGTGGAAATCAAACTCTCAGGTATCCAGATGATGCATATGATCGAATTTGGGTGCCGCAGATTGGTTTTGGATCAATTACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Raffinose_syn

Protein Analysis

112

Amino Acids

13.0

Weight (kDa)

9.78

Isoelectric Point (pI)

55.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40390
fragaria_vesca	FvH4_5g05860 FvH4_6g51380
malus_domestica	MD06G1169800.v1.1 MD14G1175300.v1.1 MD17G1030100.v1.1
prunus_persica	Prupe.3G289900_v2.0.a1
pyrus_communis	pycom06g15120 pycom14g14630 pycom17g02750
rosa_chinensis	RchiOBHm_Chr2g0173061 RchiOBHm_Chr7g0192961
rosa_laevigata	RLG00000004308 RLG00000022154
rosa_multiflora	Rmu_sc0002040.1_g000062 Rmu_sc0011236.1_g000005
rosa_roxburghii	Rroxscaffold_2G00079280 Rroxscaffold_3G00262500
rosa_rugosa	Rorug02G0564900 Rorug07G0006500
rosa_samantha	Rh2AG644700 Rh2BG655500 Rh2CG620600 Rh2DG668800 Rh7AG131800 Rh7BG132600 Rh7DG133700
rosa_wichuraiana	Rw2G052950 Rw7G011240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	306
AciI	CCGC	1 cut(s)	310
AclWI	GGATC	3 cut(s)	147, 208, 333
AcsI	RAATTY	2 cut(s)	176, 299
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	2 cut(s)	142, 195
AluBI	AGCT	1 cut(s)	30
AluI	AGCT	1 cut(s)	30
Alw21I	GWGCWC	1 cut(s)	32
AlwI	GGATC	3 cut(s)	147, 208, 333
AoxI	GGCC	1 cut(s)	53
ApoI	RAATTY	2 cut(s)	176, 299
AspS9I	GGNCC	1 cut(s)	53
AsuII	TTCGAA	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	32
BccI	CCATC	1 cut(s)	247
BceAI	ACGGC	1 cut(s)	57
BciVI	GTATCC	1 cut(s)	287
BclI	TGATCA	1 cut(s)	147
BfaI	CTAG	1 cut(s)	119
BfuI	GTATCC	1 cut(s)	287
BisI	GCNGC	1 cut(s)	310
BlsI	GCNGC	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	308
BmrI	ACTGGG	1 cut(s)	60
BmsI	GCATC	1 cut(s)	276
BmuI	ACTGGG	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	16
Bpu14I	TTCGAA	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse1I	ACTGG	2 cut(s)	33, 55
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	2 cut(s)	33, 55
BsgI	GTGCAG	1 cut(s)	152
BshFI	GGCC	1 cut(s)	55
BshNI	GGYRCC	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	316
BsnI	GGCC	1 cut(s)	55
Bsp119I	TTCGAA	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	5 cut(s)	147, 152, 213, 294, 325
BspACI	CCGC	1 cut(s)	310
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	1 cut(s)	284
BspLI	GGNNCC	1 cut(s)	308
BspPI	GGATC	3 cut(s)	147, 208, 333
BspQI	GCTCTTC	1 cut(s)	233
BspT104I	TTCGAA	1 cut(s)	180
BspT107I	GGYRCC	1 cut(s)	306
BsrI	ACTGG	2 cut(s)	33, 55
BssMI	GATC	5 cut(s)	147, 152, 213, 294, 325
Bst4CI	ACNGT	2 cut(s)	60, 336
Bst6I	CTCTTC	1 cut(s)	233
BstBI	TTCGAA	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	271
BstKTI	GATC	5 cut(s)	150, 155, 216, 297, 328
BstMBI	GATC	5 cut(s)	147, 152, 213, 294, 325
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BsuI	GTATCC	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	53
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	3 cut(s)	30, 55, 206
CviKI_1	RGCY	3 cut(s)	30, 55, 206
DdeI	CTNAG	1 cut(s)	271
DpnI	GATC	5 cut(s)	149, 154, 215, 296, 327
DpnII	GATC	5 cut(s)	147, 152, 213, 294, 325
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Ecl136II	GAGCTC	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	30
EcoICRI	GAGCTC	1 cut(s)	30
EcoT22I	ATGCAT	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	32
FaeI	CATG	1 cut(s)	211
FatI	CATG	1 cut(s)	207
FauNDI	CATATG	2 cut(s)	124, 291
FbaI	TGATCA	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	310
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	310
FspBI	CTAG	1 cut(s)	119
GluI	GCNGC	1 cut(s)	310
GsuI	CTGGAG	1 cut(s)	16
HaeIII	GGCC	1 cut(s)	55
Hin1II	CATG	1 cut(s)	211
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HpaI	GTTAAC	1 cut(s)	63
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	1 cut(s)	152
Hpy188III	TCNNGA	1 cut(s)	280
Hpy8I	GTNNAC	1 cut(s)	63
HpyCH4III	ACNGT	2 cut(s)	60, 336
HpyCH4V	TGCA	2 cut(s)	169, 289
HpyF3I	CTNAG	1 cut(s)	271
Hsp92II	CATG	1 cut(s)	211
Ksp22I	TGATCA	1 cut(s)	147
KspAI	GTTAAC	1 cut(s)	63
Kzo9I	GATC	5 cut(s)	147, 152, 213, 294, 325
LguI	GCTCTTC	1 cut(s)	233
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	4 cut(s)	36, 46, 258, 293
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	1 cut(s)	119
MalI	GATC	5 cut(s)	149, 154, 215, 296, 327
MboI	GATC	5 cut(s)	147, 152, 213, 294, 325
MboII	GAAGA	3 cut(s)	154, 194, 220
MflI	RGATCY	1 cut(s)	152
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	4 cut(s)	137, 176, 299, 329
MnlI	CCTC	1 cut(s)	81
Mph1103I	ATGCAT	1 cut(s)	291
MseI	TTAA	2 cut(s)	5, 62
NdeI	CATATG	2 cut(s)	124, 291
NdeII	GATC	5 cut(s)	147, 152, 213, 294, 325
NlaIII	CATG	1 cut(s)	211
NlaIV	GGNNCC	1 cut(s)	308
NsiI	ATGCAT	1 cut(s)	291
NspV	TTCGAA	1 cut(s)	180
PciSI	GCTCTTC	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	311
Psp124BI	GAGCTC	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	308
PspPI	GGNCC	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	32
SapI	GCTCTTC	1 cut(s)	233
SaqAI	TTAA	2 cut(s)	5, 62
SatI	GCNGC	1 cut(s)	310
Sau3AI	GATC	5 cut(s)	147, 152, 213, 294, 325
Sau96I	GGNCC	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	4 cut(s)	25, 32, 247, 277
SfaNI	GCATC	1 cut(s)	276
SfuI	TTCGAA	1 cut(s)	180
Sse9I	AATT	4 cut(s)	137, 176, 299, 329
SsiI	CCGC	1 cut(s)	310
SspI	AATATT	1 cut(s)	75
SspMI	CTAG	1 cut(s)	119
SstI	GAGCTC	1 cut(s)	32
TaaI	ACNGT	2 cut(s)	60, 336
TaqI	TCGA	5 cut(s)	135, 173, 180, 212, 297
TasI	AATT	4 cut(s)	137, 176, 299, 329
TauI	GCSGC	1 cut(s)	312
Tru1I	TTAA	2 cut(s)	5, 62
Tru9I	TTAA	2 cut(s)	5, 62
TspDTI	ATGAA	1 cut(s)	150
XapI	RAATTY	2 cut(s)	176, 299
XspI	CTAG	1 cut(s)	119
Zsp2I	ATGCAT	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.