Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005392

Physical Location & Seq

Genomic Coordinates Reverse (-)

89255005 .. 89257784

Gene Structure 2780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG668800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2319 bp

ATGGCCCCAAATTTGAGCAATGGCTTTGCCGTCGTTAACGTCGACAATGGCGCAAACCCAAGTCCTTTTAGCCTTCAAGGTTCCAACTTGACTGCCAACGGCCACGTCATCCTCTCCGACGTCCCCCAAAACATAACACTCCACCCATCACCCCACACCATCAACAAGTCCACCACCCCCGGCTCTTTTGTTGGCTTCGACGCCGCCGAGGCCAGCAGCCGCCACGTGGTGCCCGTCGGCCAGCTGAAGGACATCCGGTTCATGAGCATCTTCCGGTTCAAGGTCTGGTGGACCACTCACTGGGTGGGATCCAACGGCCGTGACCTCGAGCAGGAGACCCAGATCGTCATCCTCGAAAACTCCGACGCCGGCAGGCCCTACGTCGTCATCCTCCCTCTCCTTGAAGGCGGCTTCCGCGCTTCCATCCAGCCAGGCTCCGAGGACTACCTCGACGTCTGTGTAGAGAGCTGTTCAACGCAGGTCAACGAAAAGGGATTCTCCGGCGTGCTTTATCTTCACGCCGGAGAAGATCCCTTCACGCTGGTGAAGGACGCCGTCAAGGTCGCCAAGGCGCACTTGGGAACGTTCAATCTGTTGGAGGAGAAGACGCCACCTGGCATCGTCGACAAGTTCGGTTGGTGCACATGGGATGCTTTTTACCTCACTGTGCACCCTCGCGGCGTCATTGATGGCGTGAGGAAGCTAGTGGAGGGTGGGTGCCCTCCAGGGCTTGTGTTGCTGGACGACGGGTGGCAGTCCATAGGCCACGACTCTGATCCCATCACCAAAGAAGGGATGGGCCAGACCGCCGCCGGTGAGCAAATGCCATGCAGGCTGCTCAAGTTCCAAGAGAACTACAAGTTCATAGACTATGTCAGCTCCAAGGACCCTAGTAGCCAAGGCATGGGTGCGTTTGTGAAGGACTTGAAGGACGAGTTCAAGAGCGTTGACTACGTGTACGTGTGGCACGCTCTGTGTGGGTACTGGGGTGGGATCCGGCCCAATGTTCCTGGCCTGCCGGAGGCGGTGGTTGTTAAGCCGGAACTGTCACCGGGGTTGAAGAACACGATGGAAGATCTGGCCGTGGATAAGATAGTCAACACTGGGATTGGGCTGGTCCCACCGGAAATGGTCAACCAGATGTATGAAGGGCTCCACTCTCACCTGAAGTCCGTCGGGATCGACGGCGTCAAGGTCGACGTTATCCATTTGTTGGAAATGTTGTGTGAGAACTATGGTGGCCGTGTGAACCTGGCTAAAGCATATTACGATGCCCTAACAGCTTCAGTGAGGAAGCACTTCGACGGCAATGGTGTCATTGCTAGCATGGAGCACTGTAACGACTTCATGTTCCTTGGAACCGAAGCCATCACTCTCGGCCGTGTCGGTGACGATTTCTGGTGCACTGACCCCTCTGGTGATCCCAACGGCACCTTTTGGTTGCAAGGGTGTCACATGGTTCATTGTGCTTACAATAGCTTATGGATGGGTAACTTCATACAGCCGGATTGGGACATGTTCCAGTCCACTCATCCCTGTGCCGCTTTCCATGCTGCCTCTAGGGCAATCTCCGGCGGTCCCATTTATGTGAGTGACACTGTGGGGAAGCACAACTTTGACTTGCTCAAAACCCTAGTGGTGCCTGACGGCTCTATCCTTCGCTGCGAGTACTATGCTCTCCCTACCCGCGATTGTCTTTTTGAGGATCCTCTCCATGATGGCCTCACCATGCTCAAAATTTGGAACCTCAACAAGTTCAATGGAGTTCTTGGAGCCTTTAACTGCCAAGGAGGAGGCTGGAGCCCAGAGACTAGGCGAAACCAATGTTTTTCTAAATTCGTGGGAAAGGTGACCTCCAAGGCCAACCCTAAAGACATTGAGTGGAACAGTGGCAAGAGTCCAATTTCCATTGAAGGAGTGCAAGTGTTTGCCTTGTACTATCACCAGGCCAAGAAGCTAGTCCTGTCTAAGCCAACCGAGGATGTGGAGTTGTCACTGGAGCCCTTCAACTTTGAGCTAATTGTCGTTTCTCCGGTGACTACTTTGCCTAGCAAGTCTGTCCAATTTGCCCCTATTGGCTTAGTGAACATGCTCAACACCGGCGGTGCTGTCAAGTCGTTGGTTTACAGTGTGGAGGGAGACTCTGTTCAAATTGGGGTGAAGGGCACCGGAGAGATGAGGGTGTTTGCGTCTGAGAAGCCACTGGGTTGCAAGATTGATGGAAGCTGTGTCGCTTTTGAGTATGAAGAGAACATGGTTAGAGTTCATGTGCCATGGACTGGTACATCCACCTTGTCTATTGTGGAGTACATATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008378 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0016740 GO:0016757 GO:0016758 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047274 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Raffinose_syn

Protein Analysis

772

Amino Acids

84.6

Weight (kDa)

5.37

Isoelectric Point (pI)

30.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Raffinose_syn	PF05691	24 - 755	0.0	Raffinose synthase or seed imbibition protein Sip1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40390
fragaria_vesca	FvH4_5g05860 FvH4_6g51380
malus_domestica	MD06G1169800.v1.1 MD14G1175300.v1.1 MD17G1030100.v1.1
prunus_persica	Prupe.3G289900_v2.0.a1
pyrus_communis	pycom06g15120 pycom14g14630 pycom17g02750
rosa_chinensis	RchiOBHm_Chr2g0173061 RchiOBHm_Chr7g0192961
rosa_laevigata	RLG00000004308 RLG00000022154
rosa_multiflora	Rmu_sc0002040.1_g000062 Rmu_sc0011236.1_g000005
rosa_roxburghii	Rroxscaffold_2G00079280 Rroxscaffold_3G00262500
rosa_rugosa	Rorug02G0564900 Rorug07G0006500
rosa_samantha	Rh2AG644700 Rh2BG655500 Rh2CG620600 Rh2DG668800 Rh7AG131800 Rh7BG132600 Rh7DG133700
rosa_wichuraiana	Rw2G052950 Rw7G011240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	123, 456
Acc36I	ACCTGC	1 cut(s)	469
AccB1I	GGYRCC	5 cut(s)	229, 717, 1430, 1639, 2165
AccB7I	CCANNNNNTGG	4 cut(s)	300, 904, 1213, 2279
AccI	GTMKAC	3 cut(s)	42, 624, 1197
AccII	CGCG	3 cut(s)	417, 678, 1689
AclI	AACGTT	1 cut(s)	584
AcoI	YGGCCR	6 cut(s)	100, 238, 316, 1080, 1240, 1378
AcsI	RAATTY	3 cut(s)	10, 1737, 1835
AcuI	CTGAAG	3 cut(s)	266, 1187, 1269
AcvI	CACGTG	1 cut(s)	226
AcyI	GRCGYC	8 cut(s)	120, 201, 366, 453, 552, 608, 681, 1188
AdeI	CACNNNGTG	2 cut(s)	229, 304
AfaI	GTAC	6 cut(s)	959, 983, 1670, 1937, 2284, 2309
AflIII	ACRYGT	3 cut(s)	954, 960, 1515
AjiI	CACGTC	1 cut(s)	106
AjnI	CCWGG	6 cut(s)	430, 613, 724, 1009, 1251, 1944
AleI	CACNNNNGTG	1 cut(s)	542
AloI	GAACNNNNNNTCC	4 cut(s)	242, 274, 2130, 2162
AluBI	AGCT	9 cut(s)	244, 468, 703, 879, 1283, 1479, 1957, 2017, 2226
AluI	AGCT	9 cut(s)	244, 468, 703, 879, 1283, 1479, 1957, 2017, 2226
Alw21I	GWGCWC	4 cut(s)	644, 672, 1335, 1406
Alw26I	GTCTC	3 cut(s)	329, 1802, 2133
Alw44I	GTGCAC	3 cut(s)	640, 668, 1402
Ama87I	CYCGRG	1 cut(s)	326
ApaLI	GTGCAC	3 cut(s)	640, 668, 1402
ApeKI	GCWGC	4 cut(s)	216, 835, 1553, 1662
ApoI	RAATTY	3 cut(s)	10, 1737, 1835
Asp700I	GAANNNNTTC	1 cut(s)	1298
AspLEI	GCGC	3 cut(s)	53, 419, 574
AspS9I	GGNCC	8 cut(s)	4, 291, 375, 799, 886, 999, 1117, 1577
AsuC2I	CCSGG	2 cut(s)	180, 1053
AsuNHI	GCTAGC	1 cut(s)	1322
AvaI	CYCGRG	1 cut(s)	326
AvaII	GGWCC	4 cut(s)	291, 886, 1117, 1577
BaeGI	GKGCMC	6 cut(s)	234, 644, 672, 722, 1406, 2168
BaeI	ACNNNNGTAYC	2 cut(s)	973, 1006
BamHI	GGATCC	3 cut(s)	308, 993, 1705
BanI	GGYRCC	5 cut(s)	229, 717, 1430, 1639, 2165
BanII	GRGCYC	3 cut(s)	1155, 1805, 2004
BbrPI	CACGTG	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	611
Bbv12I	GWGCWC	4 cut(s)	644, 672, 1335, 1406
BbvI	GCAGC	4 cut(s)	228, 822, 1540, 1649
BcgI	CGANNNNNNTGC	2 cut(s)	1655, 1689
BciT130I	CCWGG	6 cut(s)	432, 615, 726, 1011, 1253, 1946
BcnI	CCSGG	2 cut(s)	180, 1053
BcoDI	GTCTC	3 cut(s)	329, 1802, 2133
BfaI	CTAG	9 cut(s)	704, 891, 1323, 1560, 1634, 1812, 1958, 2049, 2317
BfuAI	ACCTGC	1 cut(s)	469
BglI	GCCNNNNNGGC	3 cut(s)	209, 832, 1562
BglII	AGATCT	1 cut(s)	1075
BmcAI	AGTACT	1 cut(s)	1670
Bme1390I	CCNGG	8 cut(s)	180, 432, 615, 726, 1011, 1053, 1253, 1946
Bme18I	GGWCC	4 cut(s)	291, 886, 1117, 1577
BmeT110I	CYCGRG	1 cut(s)	326
BmgBI	CACGTC	1 cut(s)	106
BmgT120I	GGNCC	8 cut(s)	4, 291, 375, 799, 886, 999, 1117, 1577
BmrFI	CCNGG	8 cut(s)	180, 432, 615, 726, 1011, 1053, 1253, 1946
BmrI	ACTGGG	4 cut(s)	310, 994, 1113, 2213
BmsI	GCATC	4 cut(s)	276, 627, 640, 1261
BmtI	GCTAGC	1 cut(s)	1326
BmuI	ACTGGG	4 cut(s)	310, 994, 1113, 2213
BpiI	GAAGAC	1 cut(s)	611
BplI	GAGNNNNNCTC	2 cut(s)	2126, 2158
BpmI	CTGGAG	3 cut(s)	708, 1819, 2018
BpuEI	CTTGAG	1 cut(s)	824
BpuMI	CCSGG	2 cut(s)	180, 1053
BsaAI	YACGTR	3 cut(s)	226, 955, 961
BsaBI	GATNNNNATC	1 cut(s)	347
BsaHI	GRCGYC	8 cut(s)	120, 201, 366, 453, 552, 608, 681, 1188
BsaI	GGTCTC	1 cut(s)	329
BsaWI	WCCGGW	5 cut(s)	255, 273, 1123, 2032, 2168
BsaXI	ACNNNNNCTCC	6 cut(s)	701, 731, 1908, 1938, 2130, 2160
Bse118I	RCCGGY	3 cut(s)	368, 812, 2099
Bse1I	ACTGG	7 cut(s)	305, 989, 1108, 1522, 2001, 2208, 2284
Bse3DI	GCAATG	3 cut(s)	25, 1315, 1317
Bse8I	GATNNNNATC	1 cut(s)	347
BseBI	CCWGG	6 cut(s)	432, 615, 726, 1011, 1253, 1946
BseJI	GATNNNNATC	1 cut(s)	347
BseMI	GCAATG	3 cut(s)	25, 1315, 1317
BseMII	CTCAG	1 cut(s)	2184
BseNI	ACTGG	7 cut(s)	305, 989, 1108, 1522, 2001, 2208, 2284
BseRI	GAGGAG	2 cut(s)	614, 1806
BseSI	GKGCMC	6 cut(s)	234, 644, 672, 722, 1406, 2168
BseX3I	CGGCCG	2 cut(s)	316, 1378
BseXI	GCAGC	4 cut(s)	228, 822, 1540, 1649
Bsh1236I	CGCG	3 cut(s)	417, 678, 1689
Bsh1285I	CGRYCG	2 cut(s)	319, 1381
BshNI	GGYRCC	5 cut(s)	229, 717, 1430, 1639, 2165
BsiEI	CGRYCG	2 cut(s)	319, 1381
BsiHKAI	GWGCWC	4 cut(s)	644, 672, 1335, 1406
BsiHKCI	CYCGRG	1 cut(s)	326
BslFI	GGGAC	4 cut(s)	107, 1103, 1526, 1563
BsmAI	GTCTC	3 cut(s)	329, 1802, 2133
BsmFI	GGGAC	4 cut(s)	107, 1103, 1526, 1563
Bso31I	GGTCTC	1 cut(s)	329
BsoBI	CYCGRG	1 cut(s)	326
Bsp143I	GATC	9 cut(s)	308, 342, 529, 775, 993, 1075, 1179, 1420, 1705
Bsp19I	CCATGG	1 cut(s)	2273
BspCNI	CTCAG	1 cut(s)	2185
BspFNI	CGCG	3 cut(s)	417, 678, 1689
BspHI	TCATGA	1 cut(s)	261
BspMI	ACCTGC	1 cut(s)	469
BspOI	GCTAGC	1 cut(s)	1326
BspT107I	GGYRCC	5 cut(s)	229, 717, 1430, 1639, 2165
BspTNI	GGTCTC	1 cut(s)	329
BsrDI	GCAATG	3 cut(s)	25, 1315, 1317
BsrFI	RCCGGY	3 cut(s)	368, 812, 2099
BsrI	ACTGG	7 cut(s)	305, 989, 1108, 1522, 2001, 2208, 2284
BssAI	RCCGGY	3 cut(s)	368, 812, 2099
BssMI	GATC	9 cut(s)	308, 342, 529, 775, 993, 1075, 1179, 1420, 1705
BssNI	GRCGYC	8 cut(s)	120, 201, 366, 453, 552, 608, 681, 1188
BssT1I	CCWWGG	7 cut(s)	567, 882, 898, 1354, 1786, 1857, 2273
Bst2UI	CCWGG	6 cut(s)	432, 615, 726, 1011, 1253, 1946
Bst4CI	ACNGT	6 cut(s)	667, 1047, 1337, 1600, 1889, 2129
Bst6I	CTCTTC	1 cut(s)	2241
BstACI	GRCGYC	8 cut(s)	120, 201, 366, 453, 552, 608, 681, 1188
BstBAI	YACGTR	3 cut(s)	226, 955, 961
BstC8I	GCNNGC	9 cut(s)	214, 242, 370, 374, 506, 833, 969, 1016, 1324
BstDEI	CTNAG	3 cut(s)	1968, 2080, 2193
BstDSI	CCRYGG	2 cut(s)	1083, 2273
BstEII	GGTNACC	1 cut(s)	1849
BstENI	CCTNNNNNAGG	2 cut(s)	329, 1019
BstFNI	CGCG	3 cut(s)	417, 678, 1689
BstHHI	GCGC	3 cut(s)	53, 419, 574
BstKTI	GATC	9 cut(s)	311, 345, 532, 778, 996, 1078, 1182, 1423, 1708
BstMAI	GTCTC	3 cut(s)	329, 1802, 2133
BstMBI	GATC	9 cut(s)	308, 342, 529, 775, 993, 1075, 1179, 1420, 1705
BstMCI	CGRYCG	2 cut(s)	319, 1381
BstMWI	GCNNNNNNNGC	7 cut(s)	209, 414, 736, 832, 1280, 1550, 1562
BstNI	CCWGG	6 cut(s)	432, 615, 726, 1011, 1253, 1946
BstNSI	RCATGY	2 cut(s)	1519, 2092
BstPI	GGTNACC	1 cut(s)	1849
BstSCI	CCNGG	8 cut(s)	178, 430, 613, 724, 1009, 1051, 1251, 1944
BstSLI	GKGCMC	6 cut(s)	234, 644, 672, 722, 1406, 2168
BstUI	CGCG	3 cut(s)	417, 678, 1689
BstV1I	GCAGC	4 cut(s)	228, 822, 1540, 1649
BstV2I	GAAGAC	1 cut(s)	611
BstX2I	RGATCY	5 cut(s)	308, 529, 993, 1075, 1705
BstYI	RGATCY	5 cut(s)	308, 529, 993, 1075, 1705
BstZI	CGGCCG	2 cut(s)	316, 1378
BtgI	CCRYGG	2 cut(s)	1083, 2273
BtrI	CACGTC	1 cut(s)	106
BveI	ACCTGC	1 cut(s)	469
Cac8I	GCNNGC	9 cut(s)	214, 242, 370, 374, 506, 833, 969, 1016, 1324
CciI	TCATGA	1 cut(s)	261
CfoI	GCGC	3 cut(s)	53, 419, 574
Cfr10I	RCCGGY	3 cut(s)	368, 812, 2099
Cfr13I	GGNCC	8 cut(s)	4, 291, 375, 799, 886, 999, 1117, 1577
CseI	GACGC	7 cut(s)	209, 374, 560, 616, 670, 1177, 2178
Csp6I	GTAC	6 cut(s)	958, 982, 1669, 1936, 2283, 2308
CviQI	GTAC	6 cut(s)	958, 982, 1669, 1936, 2283, 2308
DdeI	CTNAG	3 cut(s)	1968, 2080, 2193
DpnI	GATC	9 cut(s)	310, 344, 531, 777, 995, 1077, 1181, 1422, 1707
DpnII	GATC	9 cut(s)	308, 342, 529, 775, 993, 1075, 1179, 1420, 1705
DraIII	CACNNNGTG	2 cut(s)	229, 304
EaeI	YGGCCR	6 cut(s)	100, 238, 316, 1080, 1240, 1378
EagI	CGGCCG	2 cut(s)	316, 1378
Eam1104I	CTCTTC	1 cut(s)	2241
EarI	CTCTTC	1 cut(s)	2241
EclXI	CGGCCG	2 cut(s)	316, 1378
Eco130I	CCWWGG	7 cut(s)	567, 882, 898, 1354, 1786, 1857, 2273
Eco24I	GRGCYC	3 cut(s)	1155, 1805, 2004
Eco31I	GGTCTC	1 cut(s)	329
Eco47I	GGWCC	4 cut(s)	291, 886, 1117, 1577
Eco52I	CGGCCG	2 cut(s)	316, 1378
Eco57I	CTGAAG	3 cut(s)	266, 1187, 1269
Eco72I	CACGTG	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	326
Eco91I	GGTNACC	1 cut(s)	1849
EcoNI	CCTNNNNNAGG	2 cut(s)	329, 1019
EcoO109I	RGGNCCY	2 cut(s)	375, 886
EcoO65I	GGTNACC	1 cut(s)	1849
EcoRII	CCWGG	6 cut(s)	430, 613, 724, 1009, 1251, 1944
EcoT14I	CCWWGG	7 cut(s)	567, 882, 898, 1354, 1786, 1857, 2273
EcoT38I	GRGCYC	3 cut(s)	1155, 1805, 2004
ErhI	CCWWGG	7 cut(s)	567, 882, 898, 1354, 1786, 1857, 2273
FalI	AAGNNNNNCTT	4 cut(s)	560, 592, 1598, 1630
FaqI	GGGAC	4 cut(s)	107, 1103, 1526, 1563
FauI	CCCGC	1 cut(s)	1694
FblI	GTMKAC	3 cut(s)	42, 624, 1197
FriOI	GRGCYC	3 cut(s)	1155, 1805, 2004
FspBI	CTAG	9 cut(s)	704, 891, 1323, 1560, 1634, 1812, 1958, 2049, 2317
GlaI	GCGC	3 cut(s)	52, 418, 573
GsuI	CTGGAG	3 cut(s)	708, 1819, 2018
HgaI	GACGC	7 cut(s)	209, 374, 560, 616, 670, 1177, 2178
HhaI	GCGC	3 cut(s)	53, 419, 574
Hin1I	GRCGYC	8 cut(s)	120, 201, 366, 453, 552, 608, 681, 1188
Hin6I	GCGC	3 cut(s)	51, 417, 572
HinP1I	GCGC	3 cut(s)	51, 417, 572
HincII	GTYRAC	8 cut(s)	37, 43, 484, 625, 949, 1099, 1135, 1198
HindII	GTYRAC	8 cut(s)	37, 43, 484, 625, 949, 1099, 1135, 1198
HinfI	GANTC	4 cut(s)	495, 770, 1897, 2141
HpaI	GTTAAC	1 cut(s)	37
Hpy188I	TCNGA	5 cut(s)	118, 364, 439, 775, 2194
Hpy188III	TCNNGA	3 cut(s)	262, 940, 1177
HpyCH4III	ACNGT	6 cut(s)	667, 1047, 1337, 1600, 1889, 2129
HpyCH4V	TGCA	7 cut(s)	642, 670, 831, 1404, 1444, 1921, 2211
HpyF10VI	GCNNNNNNNGC	7 cut(s)	209, 414, 736, 832, 1280, 1550, 1562
HpyF3I	CTNAG	3 cut(s)	1968, 2080, 2193
Hsp92I	GRCGYC	8 cut(s)	120, 201, 366, 453, 552, 608, 681, 1188
HspAI	GCGC	3 cut(s)	51, 417, 572
KroI	GCCGGC	1 cut(s)	368
KroNI	GCCGGC	1 cut(s)	370
KspAI	GTTAAC	1 cut(s)	37
Kzo9I	GATC	9 cut(s)	308, 342, 529, 775, 993, 1075, 1179, 1420, 1705
LmnI	GCTCC	7 cut(s)	440, 884, 1158, 1330, 1772, 1800, 1999
Lsp1109I	GCAGC	4 cut(s)	228, 822, 1540, 1649
LweI	GCATC	4 cut(s)	276, 627, 640, 1261
MaeI	CTAG	9 cut(s)	704, 891, 1323, 1560, 1634, 1812, 1958, 2049, 2317
MalI	GATC	9 cut(s)	310, 344, 531, 777, 995, 1077, 1181, 1422, 1707
MboI	GATC	9 cut(s)	308, 342, 529, 775, 993, 1075, 1179, 1420, 1705
MboII	GAAGA	7 cut(s)	262, 506, 539, 616, 1072, 1085, 2258
MflI	RGATCY	5 cut(s)	308, 529, 993, 1075, 1705
MluCI	AATT	7 cut(s)	10, 1737, 1835, 1902, 2019, 2063, 2151
MlyI	GAGTC	3 cut(s)	764, 1906, 2135
MmeI	TCCRAC	6 cut(s)	108, 141, 336, 387, 576, 1194
MroNI	GCCGGC	1 cut(s)	368
MroXI	GAANNNNTTC	1 cut(s)	1298
MseI	TTAA	3 cut(s)	36, 1035, 1779
MslI	CAYNNNNRTG	3 cut(s)	542, 1536, 1586
MspA1I	CMGCKG	1 cut(s)	244
MspR9I	CCNGG	8 cut(s)	180, 432, 615, 726, 1011, 1053, 1253, 1946
MvaI	CCWGG	6 cut(s)	432, 615, 726, 1011, 1253, 1946
MvnI	CGCG	3 cut(s)	417, 678, 1689
MwoI	GCNNNNNNNGC	7 cut(s)	209, 414, 736, 832, 1280, 1550, 1562
NaeI	GCCGGC	1 cut(s)	370
NciI	CCSGG	2 cut(s)	180, 1053
NcoI	CCATGG	1 cut(s)	2273
NdeII	GATC	9 cut(s)	308, 342, 529, 775, 993, 1075, 1179, 1420, 1705
NgoMIV	GCCGGC	1 cut(s)	368
NheI	GCTAGC	1 cut(s)	1322
NmeAIII	GCCGAG	2 cut(s)	232, 1356
NmuCI	GTSAC	8 cut(s)	320, 1047, 1388, 1451, 1592, 1849, 1992, 2035
NspI	RCATGY	2 cut(s)	1519, 2092
OliI	CACNNNNGTG	1 cut(s)	542
PaeR7I	CTCGAG	1 cut(s)	326
PagI	TCATGA	1 cut(s)	261
PciI	ACATGT	1 cut(s)	1515
PcsI	WCGNNNNNNNCGW	5 cut(s)	39, 204, 231, 351, 360
PdiI	GCCGGC	1 cut(s)	370
PdmI	GAANNNNTTC	1 cut(s)	1298
PfeI	GAWTC	1 cut(s)	495
PflFI	GACNNNGTC	3 cut(s)	554, 872, 1187
PflMI	CCANNNNNTGG	4 cut(s)	300, 904, 1213, 2279
PleI	GAGTC	3 cut(s)	764, 1905, 2135
PmaCI	CACGTG	1 cut(s)	226
PmlI	CACGTG	1 cut(s)	226
PpsI	GAGTC	3 cut(s)	764, 1905, 2135
Ppu21I	YACGTR	3 cut(s)	226, 955, 961
PpuMI	RGGWCCY	1 cut(s)	886
PscI	ACATGT	1 cut(s)	1515
Psp1406I	AACGTT	1 cut(s)	584
Psp5II	RGGWCCY	1 cut(s)	886
Psp6I	CCWGG	6 cut(s)	430, 613, 724, 1009, 1251, 1944
PspCI	CACGTG	1 cut(s)	226
PspEI	GGTNACC	1 cut(s)	1849
PspGI	CCWGG	6 cut(s)	430, 613, 724, 1009, 1251, 1944
PspPI	GGNCC	8 cut(s)	4, 291, 375, 799, 886, 999, 1117, 1577
PspPPI	RGGWCCY	1 cut(s)	886
PspXI	VCTCGAGB	1 cut(s)	326
PsuI	RGATCY	5 cut(s)	308, 529, 993, 1075, 1705
PsyI	GACNNNGTC	3 cut(s)	554, 872, 1187
PvuII	CAGCTG	1 cut(s)	244
RsaI	GTAC	6 cut(s)	959, 983, 1670, 1937, 2284, 2309
RsaNI	GTAC	6 cut(s)	958, 982, 1669, 1936, 2283, 2308
RseI	CAYNNNNRTG	3 cut(s)	542, 1536, 1586
SalI	GTCGAC	3 cut(s)	41, 623, 1196
SaqAI	TTAA	3 cut(s)	36, 1035, 1779
Sau3AI	GATC	9 cut(s)	308, 342, 529, 775, 993, 1075, 1179, 1420, 1705
Sau96I	GGNCC	8 cut(s)	4, 291, 375, 799, 886, 999, 1117, 1577
ScaI	AGTACT	1 cut(s)	1670
SchI	GAGTC	3 cut(s)	764, 1906, 2135
ScrFI	CCNGG	8 cut(s)	180, 432, 615, 726, 1011, 1053, 1253, 1946
SfaNI	GCATC	4 cut(s)	276, 627, 640, 1261
Sfr274I	CTCGAG	1 cut(s)	326
SgrAI	CRCCGGYG	2 cut(s)	812, 2099
SinI	GGWCC	4 cut(s)	291, 886, 1117, 1577
SlaI	CTCGAG	1 cut(s)	326
SmiMI	CAYNNNNRTG	3 cut(s)	542, 1536, 1586
SmlI	CTYRAG	2 cut(s)	326, 839
SmoI	CTYRAG	2 cut(s)	326, 839
Sse9I	AATT	7 cut(s)	10, 1737, 1835, 1902, 2019, 2063, 2151
SspMI	CTAG	9 cut(s)	704, 891, 1323, 1560, 1634, 1812, 1958, 2049, 2317
StyD4I	CCNGG	8 cut(s)	178, 430, 613, 724, 1009, 1051, 1251, 1944
StyI	CCWWGG	7 cut(s)	567, 882, 898, 1354, 1786, 1857, 2273
TaaI	ACNGT	6 cut(s)	667, 1047, 1337, 1600, 1889, 2129
TaqI	TCGA	9 cut(s)	42, 198, 327, 354, 450, 624, 1182, 1197, 1302
TasI	AATT	7 cut(s)	10, 1737, 1835, 1902, 2019, 2063, 2151
TatI	WGTACW	3 cut(s)	1668, 1935, 2307
TauI	GCSGC	6 cut(s)	206, 222, 411, 681, 812, 1544
TfiI	GAWTC	1 cut(s)	495
Tru1I	TTAA	3 cut(s)	36, 1035, 1779
Tru9I	TTAA	3 cut(s)	36, 1035, 1779
TseFI	GTSAC	8 cut(s)	320, 1047, 1388, 1451, 1592, 1849, 1992, 2035
TseI	GCWGC	4 cut(s)	216, 835, 1553, 1662
Tsp45I	GTSAC	8 cut(s)	320, 1047, 1388, 1451, 1592, 1849, 1992, 2035
TspDTI	ATGAA	8 cut(s)	250, 853, 1161, 1336, 1451, 1486, 2255, 2259
TspGWI	ACGGA	1 cut(s)	1162
Tth111I	GACNNNGTC	3 cut(s)	554, 872, 1187
Van91I	CCANNNNNTGG	4 cut(s)	300, 904, 1213, 2279
VneI	GTGCAC	3 cut(s)	640, 668, 1402
VpaK11BI	GGWCC	4 cut(s)	291, 886, 1117, 1577
XagI	CCTNNNNNAGG	2 cut(s)	329, 1019
XapI	RAATTY	3 cut(s)	10, 1737, 1835
XceI	RCATGY	2 cut(s)	1519, 2092
XcmI	CCANNNNNNNNNTGG	3 cut(s)	301, 574, 793
XhoI	CTCGAG	1 cut(s)	326
XmiI	GTMKAC	3 cut(s)	42, 624, 1197
XmnI	GAANNNNTTC	1 cut(s)	1298
XspI	CTAG	9 cut(s)	704, 891, 1323, 1560, 1634, 1812, 1958, 2049, 2317
ZraI	GACGTC	2 cut(s)	121, 454
ZrmI	AGTACT	1 cut(s)	1670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.