Rorug07G0239700

May act early in the ethylene signal transduction pathway, possibly as an ethylene receptor, or as a regulator of the pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0003094
Physical Location & Seq
Forward (+)
22064613 .. 22064969
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0239700.1

Sequence Viewer

Length: 357 bp
ATGGTTCACAGGTATGAGGCCCGCTCGGGAATTAAAGGATTTTCACATAAAACATTGAAATTCAAAGTTTTCAAATTGAGTTCCGATAAGTGTGAGTGGATTGAGAAAGAAACACTAGGTAATGTTGCTCTCTTTGTGGGTGATAATTCGTCAATATCAGTGTTGACTTCAAATTTTCTGGGATGCAAACCAAATTGCATATACTTCAACCAAGATTATGATTGCGTAGACAACGGTTCCGAACCTATTACTGATTTTGGTGTCTATGACATCGAAAAACAGACAATTTCAAAGCCTTACAGTGCAGATGCCAAGGACCTAGTGGAGATGACTAAATTACCTTCTATTTGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0001101 GO:0002237 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009308 GO:0009408 GO:0009593 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009651 GO:0009690 GO:0009719 GO:0009720 GO:0009723 GO:0009725 GO:0009726 GO:0009727 GO:0009733 GO:0009737 GO:0009739 GO:0009743 GO:0009755 GO:0009756 GO:0009873 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010087 GO:0010104 GO:0010105 GO:0010119 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0016999 GO:0017000 GO:0017144 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0032502 GO:0032870 GO:0033036 GO:0033037 GO:0033554 GO:0033993 GO:0034754 GO:0035556 GO:0036211 GO:0038023 GO:0038199 GO:0042221 GO:0042445 GO:0042545 GO:0042562 GO:0042742 GO:0042743 GO:0042802 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046483 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048856 GO:0050665 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051239 GO:0051301 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0051740 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070727 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071369 GO:0071495 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0072328 GO:0072593 GO:0097305 GO:0098542 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:1903409 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
GAF HATPase_c HisKA Response_reg

Protein Analysis

118

Amino Acids

13.34

Weight (kDa)

5.63

Isoelectric Point (pI)

18.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 2 - 90 4.4e-18 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 24
AccI GTMKAC 1 cut(s) 228
AciI CCGC 1 cut(s) 22
AcsI RAATTY 2 cut(s) 59, 172
AgsI TTSAA 6 cut(s) 58, 64, 73, 171, 208, 291
Ama87I CYCGRG 1 cut(s) 25
AoxI GGCC 1 cut(s) 18
ApoI RAATTY 2 cut(s) 59, 172
AspS9I GGNCC 2 cut(s) 19, 316
AsuHPI GGTGA 1 cut(s) 152
AvaI CYCGRG 1 cut(s) 25
AvaII GGWCC 1 cut(s) 316
BfaI CTAG 2 cut(s) 116, 320
Bme18I GGWCC 1 cut(s) 316
BmeT110I CYCGRG 1 cut(s) 25
BmgT120I GGNCC 2 cut(s) 19, 316
BmiI GGNNCC 1 cut(s) 238
BmsI GCATC 2 cut(s) 173, 298
BplI GAGNNNNNCTC 2 cut(s) 8, 40
BsaJI CCNNGG 1 cut(s) 312
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 1 cut(s) 188
BsgI GTGCAG 1 cut(s) 324
BshFI GGCC 1 cut(s) 20
BsiHKCI CYCGRG 1 cut(s) 25
BsnI GGCC 1 cut(s) 20
BsoBI CYCGRG 1 cut(s) 25
BspACI CCGC 1 cut(s) 22
BspANI GGCC 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 238
BsrBI CCGCTC 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 312
Bst4CI ACNGT 2 cut(s) 236, 302
BstC8I GCNNGC 1 cut(s) 22
BstF5I GGATG 1 cut(s) 188
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 188
BtsIMutI CAGTG 2 cut(s) 165, 307
Cac8I GCNNGC 1 cut(s) 22
Cfr13I GGNCC 2 cut(s) 19, 316
CviJI RGCY 2 cut(s) 20, 295
CviKI_1 RGCY 2 cut(s) 20, 295
Eco130I CCWWGG 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 316
Eco88I CYCGRG 1 cut(s) 25
EcoO109I RGGNCCY 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 312
FaiI YATR 6 cut(s) 15, 48, 200, 202, 219, 267
FauI CCCGC 1 cut(s) 29
FblI GTMKAC 1 cut(s) 228
FokI GGATG 1 cut(s) 195
FspBI CTAG 2 cut(s) 116, 320
HaeIII GGCC 1 cut(s) 20
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 3 cut(s) 7, 165, 229
Hpy188I TCNGA 2 cut(s) 85, 241
Hpy188III TCNNGA 1 cut(s) 27
Hpy8I GTNNAC 3 cut(s) 7, 165, 229
HpyAV CCTTC 1 cut(s) 351
HpyCH4III ACNGT 2 cut(s) 236, 302
HpyCH4V TGCA 3 cut(s) 186, 198, 305
LpnPI CCDG 1 cut(s) 164
LweI GCATC 2 cut(s) 173, 298
MaeI CTAG 2 cut(s) 116, 320
MbiI CCGCTC 1 cut(s) 24
MluCI AATT 8 cut(s) 30, 59, 74, 145, 172, 193, 285, 335
MnlI CCTC 1 cut(s) 10
MseI TTAA 1 cut(s) 33
MslI CAYNNNNRTG 1 cut(s) 12
NlaIV GGNNCC 1 cut(s) 238
PpuMI RGGWCCY 1 cut(s) 316
Psp5II RGGWCCY 1 cut(s) 316
PspN4I GGNNCC 1 cut(s) 238
PspPI GGNCC 2 cut(s) 19, 316
PspPPI RGGWCCY 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 12
SaqAI TTAA 1 cut(s) 33
Sau96I GGNCC 2 cut(s) 19, 316
SetI ASST 5 cut(s) 14, 121, 247, 321, 343
SfaNI GCATC 2 cut(s) 173, 298
SgeI CNNG 9 cut(s) 22, 33, 37, 39, 128, 191, 224, 325, 332
SinI GGWCC 1 cut(s) 316
SmiMI CAYNNNNRTG 1 cut(s) 12
Sse9I AATT 8 cut(s) 30, 59, 74, 145, 172, 193, 285, 335
SsiI CCGC 1 cut(s) 22
SspMI CTAG 2 cut(s) 116, 320
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 2 cut(s) 236, 302
TaqI TCGA 1 cut(s) 273
TasI AATT 8 cut(s) 30, 59, 74, 145, 172, 193, 285, 335
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 2 cut(s) 165, 307
TspRI CASTG 2 cut(s) 165, 307
VpaK11BI GGWCC 1 cut(s) 316
XapI RAATTY 2 cut(s) 59, 172
XcmI CCANNNNNNNNNTGG 1 cut(s) 319
XmiI GTMKAC 1 cut(s) 228
XspI CTAG 2 cut(s) 116, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.