Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003094

Physical Location & Seq

Genomic Coordinates Forward (+)

22090755 .. 22097148

Gene Structure 6394 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0239800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGATGGTCAATGGAACTCTAGTGTGTGTCCTCATTCATACAGCTGTTACCAAGTACTTGTCCTTCAAAGCTGTCGATGGCGGTTTTGTCTATAATAAAGGAAAGGTTCACAAGGTTCCAGCAACTAACATGGAGGCACTTAAATCTCCACTCATGGGTCTATTTGAAAAGCGTCGTGCCCGCAAGTTCTTCATATATGTTCAAGATTATAATGAAAGTGATCCAAAAACACACGGGGGAATAGACTTTACGAGAGTGACAACTAGAGAATTGATTGAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002237 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009308 GO:0009408 GO:0009593 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009651 GO:0009690 GO:0009719 GO:0009720 GO:0009723 GO:0009725 GO:0009726 GO:0009727 GO:0009733 GO:0009737 GO:0009739 GO:0009743 GO:0009755 GO:0009756 GO:0009873 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010087 GO:0010104 GO:0010105 GO:0010119 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0016999 GO:0017000 GO:0017144 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0032502 GO:0032870 GO:0033036 GO:0033037 GO:0033554 GO:0033993 GO:0034754 GO:0035556 GO:0036211 GO:0038023 GO:0038199 GO:0042221 GO:0042445 GO:0042545 GO:0042562 GO:0042742 GO:0042743 GO:0042802 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046483 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048856 GO:0050665 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051239 GO:0051301 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0051740 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070727 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071369 GO:0071495 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0072328 GO:0072593 GO:0097305 GO:0098542 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:1903409 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

GAF HATPase_c HisKA Response_reg

Protein Analysis

94

Amino Acids

10.67

Weight (kDa)

9.39

Isoelectric Point (pI)

31.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDI	PF00996	1 - 92	2.8e-40	GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Orthologous Genes (Group: OG0003094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66340
fragaria_vesca	FvH4_1g23240 FvH4_1g23240 FvH4_1g23240 FvH4_1g23240 FvH4_1g23240
malus_domestica	MD02G1161700.v1.1 MD15G1275900.v1.1
prunus_persica	Prupe.1G556000_v2.0.a1 Prupe.1G556000_v2.0.a1 Prupe.1G556000_v2.0.a1
pyrus_communis	pycom02g12760 pycom15g23880
rosa_chinensis	RchiOBHm_Chr2g0118071 RchiOBHm_Chr7g0226881
rosa_laevigata	RLG00000001686 RLG00000018390
rosa_multiflora	Rmu_sc0000948.1_g000033 Rmu_sc0005962.1_g000010
rosa_roxburghii	Rroxscaffold_2G00125990 Rroxscaffold_3G00232470
rosa_rugosa	Rorug02G0215600 Rorug02G0215700 Rorug02G0215800 Rorug07G0239700 Rorug07G0239800 Rorug07G0239900 Rorug07G0239900
rosa_samantha	Rh2AG272800 Rh2BG284600 Rh2DG280700 Rh2DG298800 Rh7AG387500 Rh7BG373900 Rh7CG406900
rosa_wichuraiana	Rw2G021540 Rw7G032540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	210
AciI	CCGC	2 cut(s)	81, 181
AclWI	GGATC	1 cut(s)	215
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	4 cut(s)	67, 167, 203, 278
AluBI	AGCT	2 cut(s)	44, 71
AluI	AGCT	2 cut(s)	44, 71
AlwI	GGATC	1 cut(s)	215
BaeGI	GKGCMC	1 cut(s)	181
BarI	GAAGNNNNNNTAC	2 cut(s)	47, 79
BccI	CCATC	1 cut(s)	71
BfaI	CTAG	2 cut(s)	20, 264
BmcAI	AGTACT	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseSI	GKGCMC	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	220
BspACI	CCGC	2 cut(s)	81, 181
BspLI	GGNNCC	1 cut(s)	117
BspPI	GGATC	1 cut(s)	215
BssMI	GATC	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	181
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstSLI	GKGCMC	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	181
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	2 cut(s)	130, 154
CviJI	RGCY	2 cut(s)	44, 71
CviKI_1	RGCY	2 cut(s)	44, 71
CviQI	GTAC	1 cut(s)	55
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
FaeI	CATG	2 cut(s)	133, 157
FaiI	YATR	8 cut(s)	39, 93, 131, 155, 194, 196, 198, 210
FatI	CATG	2 cut(s)	129, 153
FauI	CCCGC	1 cut(s)	188
FspBI	CTAG	2 cut(s)	20, 264
HgaI	GACGC	1 cut(s)	161
Hin1II	CATG	2 cut(s)	133, 157
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	1 cut(s)	109
Hpy99I	CGWCG	1 cut(s)	177
HpyAV	CCTTC	1 cut(s)	73
Hsp92II	CATG	2 cut(s)	133, 157
Kzo9I	GATC	1 cut(s)	220
LpnPI	CCDG	1 cut(s)	132
MaeI	CTAG	2 cut(s)	20, 264
MaeIII	GTNAC	2 cut(s)	46, 256
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	1 cut(s)	269
MnlI	CCTC	2 cut(s)	41, 127
MseI	TTAA	1 cut(s)	141
MspA1I	CMGCKG	1 cut(s)	44
Mva1269I	GAATGC	1 cut(s)	284
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	2 cut(s)	133, 157
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	256
PctI	GAATGC	1 cut(s)	284
PsiI	TTATAA	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	117
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	220
ScaI	AGTACT	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	4 cut(s)	46, 73, 108, 117
Sse9I	AATT	1 cut(s)	269
SsiI	CCGC	2 cut(s)	81, 181
SspMI	CTAG	2 cut(s)	20, 264
TaqI	TCGA	1 cut(s)	75
TasI	AATT	1 cut(s)	269
TatI	WGTACW	1 cut(s)	54
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	256
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	3 cut(s)	26, 181, 228
XspI	CTAG	2 cut(s)	20, 264
ZrmI	AGTACT	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.