Rorug07G0239900

May act early in the ethylene signal transduction pathway, possibly as an ethylene receptor, or as a regulator of the pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0003094
Physical Location & Seq
Forward (+)
22101937 .. 22104442
2506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0239900.1

Sequence Viewer

Length: 282 bp
ATGCAAGAAACACTTTATCTCATGGTGACATTGTTAGACCAATATCTTTCTGAAGTCCCAATTAAGAAGAATGAAATGCAATTAATTGATCTTACTGCACTCTTGTTGGCATCAAAGTATGAGGACTTTTGGCATCCAAGGCATATGATTTGCTTTGGTTTGTTTTGCTCTGCAAAAATACCGGTCAAAGACTTGATTAGCATCTCAGCTGAGTCATACACTAGAGACCAGGTGCTTGGAATGGTATGTGTCTTTACTATTAAGGGATTTTCATTCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0001101 GO:0002237 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009308 GO:0009408 GO:0009593 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009651 GO:0009690 GO:0009719 GO:0009720 GO:0009723 GO:0009725 GO:0009726 GO:0009727 GO:0009733 GO:0009737 GO:0009739 GO:0009743 GO:0009755 GO:0009756 GO:0009873 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010087 GO:0010104 GO:0010105 GO:0010119 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0016999 GO:0017000 GO:0017144 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0032502 GO:0032870 GO:0033036 GO:0033037 GO:0033554 GO:0033993 GO:0034754 GO:0035556 GO:0036211 GO:0038023 GO:0038199 GO:0042221 GO:0042445 GO:0042545 GO:0042562 GO:0042742 GO:0042743 GO:0042802 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046483 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048856 GO:0050665 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051239 GO:0051301 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0051740 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070727 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071369 GO:0071495 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0072328 GO:0072593 GO:0097305 GO:0098542 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:1903409 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
GAF HATPase_c HisKA Response_reg

Protein Analysis

93

Amino Acids

10.74

Weight (kDa)

5.53

Isoelectric Point (pI)

14.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 2 - 81 1.2e-12 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 72
AgeI ACCGGT 1 cut(s) 181
AjnI CCWGG 1 cut(s) 228
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 219
AseI ATTAAT 1 cut(s) 83
AsiGI ACCGGT 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 1 cut(s) 222
Bme1390I CCNGG 1 cut(s) 230
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 3 cut(s) 119, 142, 210
BsaBI GATNNNNATC 1 cut(s) 200
BsaI GGTCTC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 137
BsaWI WCCGGW 1 cut(s) 181
Bse118I RCCGGY 1 cut(s) 181
Bse8I GATNNNNATC 1 cut(s) 200
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 1 cut(s) 137
BseGI GGATG 1 cut(s) 133
BseJI GATNNNNATC 1 cut(s) 200
BseMII CTCAG 2 cut(s) 201, 219
BsgI GTGCAG 1 cut(s) 81
BshTI ACCGGT 1 cut(s) 181
BsiSI CCGG 1 cut(s) 182
BslFI GGGAC 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 41
Bso31I GGTCTC 1 cut(s) 219
Bsp143I GATC 1 cut(s) 88
BspCNI CTCAG 2 cut(s) 202, 218
BspTNI GGTCTC 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 181
BssAI RCCGGY 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 137
Bst2UI CCWGG 1 cut(s) 230
BstDEI CTNAG 2 cut(s) 205, 210
BstF5I GGATG 1 cut(s) 133
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 139
BstNI CCWGG 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 228
BstXI CCANNNNNNTGG 1 cut(s) 236
BtsCI GGATG 1 cut(s) 133
Cfr10I RCCGGY 1 cut(s) 181
CsiI ACCWGGT 1 cut(s) 228
CspAI ACCGGT 1 cut(s) 181
CviAII CATG 1 cut(s) 22
CviJI RGCY 1 cut(s) 209
CviKI_1 RGCY 1 cut(s) 209
DdeI CTNAG 2 cut(s) 205, 210
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 137
Eco31I GGTCTC 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 228
EcoT14I CCWWGG 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 137
FaeI CATG 1 cut(s) 25
FaiI YATR 7 cut(s) 23, 120, 144, 146, 217, 247, 280
FalI AAGNNNNNCTT 1 cut(s) 29
FaqI GGGAC 1 cut(s) 41
FatI CATG 1 cut(s) 21
FauNDI CATATG 1 cut(s) 144
FokI GGATG 1 cut(s) 120
FspBI CTAG 1 cut(s) 222
HapII CCGG 1 cut(s) 182
Hin1II CATG 1 cut(s) 25
HinfI GANTC 1 cut(s) 212
HpaII CCGG 1 cut(s) 182
HphI GGTGA 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 52
HpyCH4V TGCA 4 cut(s) 4, 79, 98, 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
HpyF3I CTNAG 2 cut(s) 205, 210
Hsp92II CATG 1 cut(s) 25
Kzo9I GATC 1 cut(s) 88
LpnPI CCDG 3 cut(s) 195, 215, 242
LweI GCATC 3 cut(s) 119, 142, 210
MabI ACCWGGT 1 cut(s) 228
MaeI CTAG 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 25
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 1 cut(s) 79
MluCI AATT 3 cut(s) 60, 80, 84
MlyI GAGTC 1 cut(s) 221
MnlI CCTC 1 cut(s) 115
MseI TTAA 3 cut(s) 63, 83, 261
MslI CAYNNNNRTG 1 cut(s) 277
MspA1I CMGCKG 1 cut(s) 209
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 230
MvaI CCWGG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 139
NdeI CATATG 1 cut(s) 144
NdeII GATC 1 cut(s) 88
NlaIII CATG 1 cut(s) 25
NmuCI GTSAC 1 cut(s) 25
PinAI ACCGGT 1 cut(s) 181
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PshBI ATTAAT 1 cut(s) 83
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
PvuII CAGCTG 1 cut(s) 209
RseI CAYNNNNRTG 1 cut(s) 277
SaqAI TTAA 3 cut(s) 63, 83, 261
Sau3AI GATC 1 cut(s) 88
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 230
SetI ASST 2 cut(s) 211, 234
SexAI ACCWGGT 1 cut(s) 228
SfaNI GCATC 3 cut(s) 119, 142, 210
SmiMI CAYNNNNRTG 1 cut(s) 277
Sse9I AATT 3 cut(s) 60, 80, 84
SspMI CTAG 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 228
StyI CCWWGG 1 cut(s) 137
TasI AATT 3 cut(s) 60, 80, 84
Tru1I TTAA 3 cut(s) 63, 83, 261
Tru9I TTAA 3 cut(s) 63, 83, 261
TseFI GTSAC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 2 cut(s) 87, 261
VspI ATTAAT 1 cut(s) 83
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.