AT1G01090

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
47234 .. 49304
2071 bp
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UTR
Exon/CDS
Intron
AT1G01090.1

Sequence Viewer

Length: 1287 bp
ATGGCGACGGCTTTCGCTCCCACTAAGCTCACTGCCACGGTTCCTCTGCATGGATCCCATGAGAATCGTCTCTTGCTCCCGATCCGATTGGCTCCTCCTTCTTCTTTCCTCGGATCCACCCGTTCCCTCTCCCTTCGCAGACTCAATCACTCCAACGCCACCCGTCGATCTCCCGTCGTCTCTGTCCAGGAAGTTGTCAAGGAGAAGCAATCCACCAATAATACCAGCCTGTTGATAACCAAAGAGGAAGGATTGGAGTTGTATGAAGATATGATACTAGGTAGATCTTTCGAAGACATGTGTGCTCAAATGTATTACCGAGGCAAGATGTTTGGTTTTGTTCACTTGTACAATGGCCAAGAGGCTGTTTCTACTGGCTTTATCAAGCTCCTTACCAAGTCTGACTCTGTCGTTAGTACCTACCGTGACCATGTCCATGCCCTCAGCAAAGGTGTCTCTGCTCGTGCTGTTATGAGCGAGCTCTTCGGCAAGGTTACTGGATGCTGCAGAGGCCAAGGTGGATCCATGCACATGTTCTCCAAAGAACACAACATGCTTGGTGGCTTTGCTTTTATTGGTGAAGGCATTCCTGTCGCCACTGGTGCTGCCTTTAGCTCCAAGTACAGGAGGGAAGTCTTGAAACAGGATTGTGATGATGTCACTGTCGCCTTTTTCGGAGATGGAACTTGTAACAACGGACAGTTCTTCGAGTGTCTCAACATGGCTGCTCTCTATAAACTGCCTATTATCTTTGTTGTCGAGAATAACTTGTGGGCCATTGGGATGTCTCACTTGAGAGCCACTTCTGACCCCGAGATTTGGAAGAAAGGTCCTGCATTTGGGATGCCTGGTGTTCATGTTGACGGTATGGATGTCTTGAAGGTCAGGGAAGTCGCTAAAGAAGCTGTCACTAGAGCTAGAAGAGGAGAAGGTCCAACCTTGGTTGAATGTGAGACTTATAGATTCAGAGGACACTCCTTGGCTGATCCCGATGAGCTCCGTGATGCTGCTGAGAAAGCCAAATACGCGGCTAGAGACCCAATCGCAGCATTGAAGAAGTATTTGATAGAGAACAAGCTTGCAAAGGAAGCAGAGCTAAAGTCAATAGAGAAAAAGATAGACGAGTTGGTGGAGGAAGCGGTTGAGTTTGCAGACGCTAGTCCACAGCCCGGTCGCAGTCAGTTGCTAGAGAATGTGTTTGCTGATCCAAAAGGATTTGGAATTGGACCTGATGGACGGTACAGATGTGAGGACCCCAAGTTTACCGAAGGCACAGCTCAAGTCTGA

Protein Analysis

428

Amino Acids

47.17

Weight (kDa)

7.16

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1_dh PF00676 90 - 390 3.9e-84 Dehydrogenase E1 component
TPP_enzyme_C PF02775 167 - 317 1.3e-06 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1028
AciI CCGC 2 cut(s) 1028, 1139
AclWI GGATC 9 cut(s) 48, 61, 76, 108, 121, 516, 529, 980, 1199
AcoI YGGCCR 1 cut(s) 355
AfaI GTAC 4 cut(s) 350, 418, 623, 1241
AfiI CCNNNNNNNGG 5 cut(s) 50, 624, 819, 839, 1169
AflIII ACRYGT 2 cut(s) 297, 531
AgsI TTSAA 4 cut(s) 640, 880, 947, 1054
AjnI CCWGG 2 cut(s) 186, 847
Alw21I GWGCWC 3 cut(s) 307, 483, 999
Alw26I GTCTC 7 cut(s) 74, 184, 460, 719, 792, 947, 1029
AlwI GGATC 9 cut(s) 48, 61, 76, 108, 121, 516, 529, 980, 1199
Ama87I CYCGRG 1 cut(s) 812
AoxI GGCC 3 cut(s) 355, 511, 774
ApeKI GCWGC 5 cut(s) 504, 605, 725, 1007, 1046
Asp700I GAANNNNTTC 1 cut(s) 585
AspS9I GGNCC 5 cut(s) 774, 830, 932, 1226, 1252
AsuC2I CCSGG 1 cut(s) 1170
AsuHPI GGTGA 1 cut(s) 590
AsuII TTCGAA 1 cut(s) 291
AvaI CYCGRG 1 cut(s) 812
AvaII GGWCC 4 cut(s) 830, 932, 1226, 1252
BaeI ACNNNNGTAYC 2 cut(s) 1231, 1264
BalI TGGCCA 1 cut(s) 357
BamHI GGATCC 3 cut(s) 53, 113, 521
BanII GRGCYC 2 cut(s) 483, 999
BarI GAAGNNNNNNTAC 2 cut(s) 258, 290
BauI CACGAG 1 cut(s) 462
BbsI GAAGAC 1 cut(s) 300
Bbv12I GWGCWC 3 cut(s) 307, 483, 999
BbvCI CCTCAGC 1 cut(s) 443
BbvI GCAGC 5 cut(s) 491, 592, 712, 994, 1058
BccI CCATC 2 cut(s) 674, 1226
BceAI ACGGC 1 cut(s) 24
BcgI CGANNNNNNTGC 2 cut(s) 574, 608
BciT130I CCWGG 2 cut(s) 188, 849
BcnI CCSGG 1 cut(s) 1170
BcoDI GTCTC 7 cut(s) 74, 184, 460, 719, 792, 947, 1029
BfaI CTAG 6 cut(s) 278, 912, 918, 1032, 1158, 1187
BfmI CTRYAG 1 cut(s) 505
BglII AGATCT 1 cut(s) 284
BisI GCNGC 6 cut(s) 505, 606, 726, 1008, 1029, 1047
BlsI GCNGC 6 cut(s) 506, 607, 727, 1009, 1030, 1048
Bme1390I CCNGG 3 cut(s) 188, 849, 1170
Bme18I GGWCC 4 cut(s) 830, 932, 1226, 1252
BmeT110I CYCGRG 1 cut(s) 812
BmgT120I GGNCC 5 cut(s) 774, 830, 932, 1226, 1252
BmiI GGNNCC 6 cut(s) 42, 55, 93, 115, 523, 1254
BmrFI CCNGG 3 cut(s) 188, 849, 1170
BmsI GCATC 3 cut(s) 491, 834, 994
BoxI GACNNNNGTC 1 cut(s) 1158
BpiI GAAGAC 1 cut(s) 300
Bpu10I CCTNAGC 1 cut(s) 443
Bpu14I TTCGAA 1 cut(s) 291
BpuEI CTTGAG 2 cut(s) 814, 1263
BpuMI CCSGG 1 cut(s) 1170
BsaI GGTCTC 1 cut(s) 1029
BsaJI CCNNGG 6 cut(s) 36, 109, 319, 514, 939, 978
BsaXI ACNNNNNCTCC 2 cut(s) 521, 551
Bsc4I CCNNNNNNNGG 5 cut(s) 50, 624, 819, 839, 1169
Bse1I ACTGG 3 cut(s) 379, 502, 604
BseBI CCWGG 2 cut(s) 188, 849
BseDI CCNNGG 6 cut(s) 36, 109, 319, 514, 939, 978
BseGI GGATG 4 cut(s) 506, 789, 849, 877
BseLI CCNNNNNNNGG 5 cut(s) 50, 624, 819, 839, 1169
BseMII CTCAG 2 cut(s) 457, 1002
BseNI ACTGG 3 cut(s) 379, 502, 604
BseRI GAGGAG 2 cut(s) 84, 939
BseXI GCAGC 5 cut(s) 491, 592, 712, 994, 1058
Bsh1236I CGCG 1 cut(s) 1028
Bsh1285I CGRYCG 1 cut(s) 1174
BshFI GGCC 3 cut(s) 357, 513, 776
BsiEI CGRYCG 1 cut(s) 1174
BsiHKAI GWGCWC 3 cut(s) 307, 483, 999
BsiHKCI CYCGRG 1 cut(s) 812
BsiSI CCGG 1 cut(s) 1170
BslI CCNNNNNNNGG 5 cut(s) 50, 624, 819, 839, 1169
BsmAI GTCTC 7 cut(s) 74, 184, 460, 719, 792, 947, 1029
BsmBI CGTCTC 2 cut(s) 74, 184
BsmI GAATGC 1 cut(s) 585
BsnI GGCC 3 cut(s) 357, 513, 776
Bso31I GGTCTC 1 cut(s) 1029
BsoBI CYCGRG 1 cut(s) 812
Bsp119I TTCGAA 1 cut(s) 291
Bsp1286I GDGCHC 3 cut(s) 307, 483, 999
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 8 cut(s) 53, 81, 113, 167, 284, 521, 985, 1204
BspACI CCGC 2 cut(s) 1028, 1139
BspANI GGCC 3 cut(s) 357, 513, 776
BspCNI CTCAG 2 cut(s) 456, 1003
BspFNI CGCG 1 cut(s) 1028
BspLI GGNNCC 6 cut(s) 42, 55, 93, 115, 523, 1254
BspMAI CTGCAG 1 cut(s) 509
BspPI GGATC 9 cut(s) 48, 61, 76, 108, 121, 516, 529, 980, 1199
BspQI GCTCTTC 1 cut(s) 488
BspT104I TTCGAA 1 cut(s) 291
BspTNI GGTCTC 1 cut(s) 1029
BsrGI TGTACA 1 cut(s) 348
BsrI ACTGG 3 cut(s) 379, 502, 604
BssECI CCNNGG 6 cut(s) 36, 109, 319, 514, 939, 978
BssMI GATC 8 cut(s) 53, 81, 113, 167, 284, 521, 985, 1204
BssSI CACGAG 1 cut(s) 462
BssT1I CCWWGG 3 cut(s) 514, 939, 978
Bst2BI CACGAG 1 cut(s) 462
Bst2UI CCWGG 2 cut(s) 188, 849
Bst4CI ACNGT 6 cut(s) 40, 425, 664, 702, 866, 1239
Bst6I CTCTTC 2 cut(s) 488, 916
BstAUI TGTACA 1 cut(s) 348
BstBI TTCGAA 1 cut(s) 291
BstC8I GCNNGC 2 cut(s) 479, 1080
BstDEI CTNAG 3 cut(s) 24, 443, 1011
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 4 cut(s) 506, 789, 849, 877
BstFNI CGCG 1 cut(s) 1028
BstKTI GATC 8 cut(s) 56, 84, 116, 170, 287, 524, 988, 1207
BstMAI GTCTC 7 cut(s) 74, 184, 460, 719, 792, 947, 1029
BstMBI GATC 8 cut(s) 53, 81, 113, 167, 284, 521, 985, 1204
BstMCI CGRYCG 1 cut(s) 1174
BstMWI GCNNNNNNNGC 6 cut(s) 510, 602, 902, 1016, 1025, 1088
BstNI CCWGG 2 cut(s) 188, 849
BstNSI RCATGY 3 cut(s) 301, 535, 556
BstPAI GACNNNNGTC 1 cut(s) 1158
BstSCI CCNGG 3 cut(s) 186, 847, 1168
BstSFI CTRYAG 1 cut(s) 505
BstUI CGCG 1 cut(s) 1028
BstV1I GCAGC 5 cut(s) 491, 592, 712, 994, 1058
BstV2I GAAGAC 1 cut(s) 300
BstX2I RGATCY 4 cut(s) 53, 113, 284, 521
BstYI RGATCY 4 cut(s) 53, 113, 284, 521
BsuRI GGCC 3 cut(s) 357, 513, 776
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 4 cut(s) 506, 789, 849, 877
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 3 cut(s) 30, 597, 660
Cac8I GCNNGC 2 cut(s) 479, 1080
Cfr13I GGNCC 5 cut(s) 774, 830, 932, 1226, 1252
CseI GACGC 1 cut(s) 1163
Csp6I GTAC 4 cut(s) 349, 417, 622, 1240
CviQI GTAC 4 cut(s) 349, 417, 622, 1240
DdeI CTNAG 3 cut(s) 24, 443, 1011
DpnI GATC 8 cut(s) 55, 83, 115, 169, 286, 523, 987, 1206
DpnII GATC 8 cut(s) 53, 81, 113, 167, 284, 521, 985, 1204
EaeI YGGCCR 1 cut(s) 355
Eam1104I CTCTTC 2 cut(s) 488, 916
EarI CTCTTC 2 cut(s) 488, 916
Ecl136II GAGCTC 2 cut(s) 481, 997
Eco130I CCWWGG 3 cut(s) 514, 939, 978
Eco24I GRGCYC 2 cut(s) 483, 999
Eco31I GGTCTC 1 cut(s) 1029
Eco47I GGWCC 4 cut(s) 830, 932, 1226, 1252
Eco53kI GAGCTC 2 cut(s) 481, 997
Eco88I CYCGRG 1 cut(s) 812
EcoICRI GAGCTC 2 cut(s) 481, 997
EcoO109I RGGNCCY 2 cut(s) 830, 1252
EcoRII CCWGG 2 cut(s) 186, 847
EcoT14I CCWWGG 3 cut(s) 514, 939, 978
EcoT38I GRGCYC 2 cut(s) 483, 999
ErhI CCWWGG 3 cut(s) 514, 939, 978
Esp3I CGTCTC 2 cut(s) 74, 184
Fnu4HI GCNGC 6 cut(s) 505, 606, 726, 1008, 1029, 1047
FokI GGATG 4 cut(s) 513, 796, 856, 884
FriOI GRGCYC 2 cut(s) 483, 999
Fsp4HI GCNGC 6 cut(s) 505, 606, 726, 1008, 1029, 1047
FspBI CTAG 6 cut(s) 278, 912, 918, 1032, 1158, 1187
GluI GCNGC 6 cut(s) 505, 606, 726, 1008, 1029, 1047
HaeIII GGCC 3 cut(s) 357, 513, 776
HapII CCGG 1 cut(s) 1170
HgaI GACGC 1 cut(s) 1163
HincII GTYRAC 1 cut(s) 862
HindII GTYRAC 1 cut(s) 862
HindIII AAGCTT 1 cut(s) 1076
HinfI GANTC 4 cut(s) 64, 141, 404, 963
HpaII CCGG 1 cut(s) 1170
HphI GGTGA 1 cut(s) 590
Hpy166II GTNNAC 4 cut(s) 343, 862, 1163, 1263
Hpy188I TCNGA 7 cut(s) 86, 113, 403, 677, 808, 968, 1286
Hpy188III TCNNGA 5 cut(s) 79, 637, 760, 877, 989
Hpy8I GTNNAC 4 cut(s) 343, 862, 1163, 1263
Hpy99I CGWCG 3 cut(s) 10, 168, 179
HpyAV CCTTC 7 cut(s) 108, 143, 242, 575, 874, 923, 1262
HpyCH4III ACNGT 6 cut(s) 40, 425, 664, 702, 866, 1239
HpyCH4V TGCA 6 cut(s) 49, 507, 529, 836, 1082, 1151
HpyF10VI GCNNNNNNNGC 6 cut(s) 510, 602, 902, 1016, 1025, 1088
HpyF3I CTNAG 3 cut(s) 24, 443, 1011
Kzo9I GATC 8 cut(s) 53, 81, 113, 167, 284, 521, 985, 1204
LguI GCTCTTC 1 cut(s) 488
LmnI GCTCC 6 cut(s) 22, 81, 97, 393, 620, 1002
Lsp1109I GCAGC 5 cut(s) 491, 592, 712, 994, 1058
LweI GCATC 3 cut(s) 491, 834, 994
MaeI CTAG 6 cut(s) 278, 912, 918, 1032, 1158, 1187
MaeIII GTNAC 5 cut(s) 425, 493, 658, 689, 907
MalI GATC 8 cut(s) 55, 83, 115, 169, 286, 523, 987, 1206
MboI GATC 8 cut(s) 53, 81, 113, 167, 284, 521, 985, 1204
MboII GAAGA 8 cut(s) 93, 278, 305, 475, 697, 835, 933, 1066
MflI RGATCY 4 cut(s) 53, 113, 284, 521
MhlI GDGCHC 3 cut(s) 307, 483, 999
MlsI TGGCCA 1 cut(s) 357
MluCI AATT 1 cut(s) 1221
MluNI TGGCCA 1 cut(s) 357
MlyI GAGTC 2 cut(s) 135, 398
MmeI TCCRAC 2 cut(s) 177, 959
Mox20I TGGCCA 1 cut(s) 357
MroXI GAANNNNTTC 1 cut(s) 585
MscI TGGCCA 1 cut(s) 357
MslI CAYNNNNRTG 3 cut(s) 435, 530, 782
Msp20I TGGCCA 1 cut(s) 357
MspI CCGG 1 cut(s) 1170
MspR9I CCNGG 3 cut(s) 188, 849, 1170
Mva1269I GAATGC 1 cut(s) 585
MvaI CCWGG 2 cut(s) 188, 849
MvnI CGCG 1 cut(s) 1028
MwoI GCNNNNNNNGC 6 cut(s) 510, 602, 902, 1016, 1025, 1088
NciI CCSGG 1 cut(s) 1170
NdeII GATC 8 cut(s) 53, 81, 113, 167, 284, 521, 985, 1204
NlaIV GGNNCC 6 cut(s) 42, 55, 93, 115, 523, 1254
NmuCI GTSAC 3 cut(s) 425, 658, 907
NspI RCATGY 3 cut(s) 301, 535, 556
NspV TTCGAA 1 cut(s) 291
PciI ACATGT 2 cut(s) 297, 531
PciSI GCTCTTC 1 cut(s) 488
PctI GAATGC 1 cut(s) 585
PdmI GAANNNNTTC 1 cut(s) 585
PfeI GAWTC 2 cut(s) 64, 963
PflFI GACNNNGTC 2 cut(s) 407, 431
PfoI TCCNGGA 1 cut(s) 186
PkrI GCNGC 6 cut(s) 506, 607, 727, 1009, 1030, 1048
PleI GAGTC 2 cut(s) 135, 398
PpsI GAGTC 2 cut(s) 135, 398
PpuMI RGGWCCY 2 cut(s) 830, 1252
PscI ACATGT 2 cut(s) 297, 531
PshAI GACNNNNGTC 1 cut(s) 1158
Psp124BI GAGCTC 2 cut(s) 483, 999
Psp5II RGGWCCY 2 cut(s) 830, 1252
Psp6I CCWGG 2 cut(s) 186, 847
PspGI CCWGG 2 cut(s) 186, 847
PspN4I GGNNCC 6 cut(s) 42, 55, 93, 115, 523, 1254
PspPI GGNCC 5 cut(s) 774, 830, 932, 1226, 1252
PspPPI RGGWCCY 2 cut(s) 830, 1252
PstI CTGCAG 1 cut(s) 509
PsuI RGATCY 4 cut(s) 53, 113, 284, 521
PsyI GACNNNGTC 2 cut(s) 407, 431
RsaI GTAC 4 cut(s) 350, 418, 623, 1241
RsaNI GTAC 4 cut(s) 349, 417, 622, 1240
RseI CAYNNNNRTG 3 cut(s) 435, 530, 782
SacI GAGCTC 2 cut(s) 483, 999
SapI GCTCTTC 1 cut(s) 488
SatI GCNGC 6 cut(s) 505, 606, 726, 1008, 1029, 1047
Sau3AI GATC 8 cut(s) 53, 81, 113, 167, 284, 521, 985, 1204
Sau96I GGNCC 5 cut(s) 774, 830, 932, 1226, 1252
SchI GAGTC 2 cut(s) 135, 398
ScrFI CCNGG 3 cut(s) 188, 849, 1170
SduI GDGCHC 3 cut(s) 307, 483, 999
SfaNI GCATC 3 cut(s) 491, 834, 994
SfcI CTRYAG 1 cut(s) 505
SfuI TTCGAA 1 cut(s) 291
SinI GGWCC 4 cut(s) 830, 932, 1226, 1252
SmiMI CAYNNNNRTG 3 cut(s) 435, 530, 782
SmlI CTYRAG 2 cut(s) 793, 1278
SmoI CTYRAG 2 cut(s) 793, 1278
Sse9I AATT 1 cut(s) 1221
SsiI CCGC 2 cut(s) 1028, 1139
SspMI CTAG 6 cut(s) 278, 912, 918, 1032, 1158, 1187
SstI GAGCTC 2 cut(s) 483, 999
StyD4I CCNGG 3 cut(s) 186, 847, 1168
StyI CCWWGG 3 cut(s) 514, 939, 978
TaaI ACNGT 6 cut(s) 40, 425, 664, 702, 866, 1239
TaqI TCGA 4 cut(s) 166, 291, 708, 759
TasI AATT 1 cut(s) 1221
TatI WGTACW 2 cut(s) 348, 621
TauI GCSGC 1 cut(s) 1031
TfiI GAWTC 2 cut(s) 64, 963
TscAI CASTG 3 cut(s) 37, 604, 667
TseFI GTSAC 3 cut(s) 425, 658, 907
TseI GCWGC 5 cut(s) 504, 605, 725, 1007, 1046
Tsp45I GTSAC 3 cut(s) 425, 658, 907
TspDTI ATGAA 2 cut(s) 279, 845
TspGWI ACGGA 2 cut(s) 711, 989
TspRI CASTG 3 cut(s) 37, 604, 667
Tth111I GACNNNGTC 2 cut(s) 407, 431
VpaK11BI GGWCC 4 cut(s) 830, 932, 1226, 1252
XceI RCATGY 3 cut(s) 301, 535, 556
XmnI GAANNNNTTC 1 cut(s) 585
XspI CTAG 6 cut(s) 278, 912, 918, 1032, 1158, 1187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.