Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0007091

Physical Location & Seq

Genomic Coordinates Reverse (-)

30267245 .. 30268942

Gene Structure 1698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG143600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGATCTGCACTTCTTCCTTAAAGCCAAAGCTCCGACTGCTCCATAACCGACGATGGAGGTCGATCAAAGCTCCGAAGTGCTGTTCTGCCAGCCCCCGGCTCAAAGAAAATGGATCAACACGCAGAAACTGTCCACTACTACAAAAAGTTAATCTCACAACACTAATCAGGAGAGGAGAGGGACCAACCTTGGTGAAATGTGAAACATACAGGTTTAGAGGACACTCATTGGCTGATCCCGATGAGCTCCGTGACCCTGCTGAGAAGGCACACTATGCTGCCAGAGACCCCATCACAGCCTTGAAGAAATACATATTCGAGCACAACTTAGCCAGTGAACACGAGCAGAAGGCCATAGATAAGAAGATAGATGAGGTGCTTGAGGATGCCGTTGAGTTCGCCTATGAGAGCCCGCTCCCACCTTGCAGCCAGCTGCTCGAGAATGTGTTTGCCGATCCTATAGGCTTTGGAATAGGACCTGATGGCCGCTACAGATGTGAGGACCCTTTACTCAGGGCACTGCCGAAGTCTAGTCTTTGTTGGACCTATAGCAATCAACTTGTGCTATATCTCTGTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

E1_dh

Protein Analysis

193

Amino Acids

21.96

Weight (kDa)

8.84

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1_dh	PF00676	57 - 140	5.5e-16	Dehydrogenase E1 component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01090
fragaria_vesca	FvH4_7g17660
malus_domestica	MD07G1159600.v1.1
prunus_persica	Prupe.2G197700_v2.0.a1
pyrus_communis	pycom01g11280 pycom01g11290 pycom07g15610
rosa_chinensis	RchiOBHm_Chr1g0334521 RchiOBHm_Chr1g0361101
rosa_laevigata	RLG00000027748 RLG00000029447
rosa_multiflora	Rmu_sc0003333.1_g000006 Rmu_sc0034406.1_g000004 Rmu_ssc0000404.1_g000009
rosa_roxburghii	Rroxscaffold_4G00295430 Rroxscaffold_4G00316780
rosa_rugosa	Rorug01G0285600
rosa_samantha	Rh1AG296900 Rh1BG261200 Rh1CG278500 Rh1DG143600 Rh1DG291200
rosa_wichuraiana	Rw0G002890 Rw1G011520 Rw1G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	415
AciI	CCGC	2 cut(s)	413, 487
AclWI	GGATC	3 cut(s)	121, 230, 449
AcoI	YGGCCR	1 cut(s)	484
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	304
AluBI	AGCT	4 cut(s)	31, 71, 247, 433
AluI	AGCT	4 cut(s)	31, 71, 247, 433
Alw21I	GWGCWC	2 cut(s)	249, 324
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	3 cut(s)	121, 230, 449
AlwNI	CAGNNNCTG	1 cut(s)	129
Ama87I	CYCGRG	1 cut(s)	437
AoxI	GGCC	2 cut(s)	351, 484
ApeKI	GCWGC	3 cut(s)	278, 426, 433
AspS9I	GGNCC	4 cut(s)	182, 476, 502, 543
AsuC2I	CCSGG	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	205
AvaI	CYCGRG	1 cut(s)	437
AvaII	GGWCC	4 cut(s)	182, 476, 502, 543
BaeGI	GKGCMC	1 cut(s)	520
BanII	GRGCYC	2 cut(s)	249, 413
BauI	CACGAG	1 cut(s)	341
Bbv12I	GWGCWC	2 cut(s)	249, 324
BbvI	GCAGC	3 cut(s)	265, 420, 438
BccI	CCATC	3 cut(s)	48, 299, 476
BceAI	ACGGC	1 cut(s)	374
BcnI	CCSGG	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	279
BfaI	CTAG	2 cut(s)	531, 580
BfmI	CTRYAG	3 cut(s)	459, 490, 547
BisI	GCNGC	4 cut(s)	279, 427, 434, 487
BlsI	GCNGC	4 cut(s)	280, 428, 435, 488
Bme1390I	CCNGG	1 cut(s)	97
Bme18I	GGWCC	4 cut(s)	182, 476, 502, 543
BmeT110I	CYCGRG	1 cut(s)	437
BmgT120I	GGNCC	4 cut(s)	182, 476, 502, 543
BmiI	GGNNCC	2 cut(s)	183, 504
BmrFI	CCNGG	1 cut(s)	97
BmsI	GCATC	1 cut(s)	376
BpuEI	CTTGAG	1 cut(s)	401
BpuMI	CCSGG	1 cut(s)	97
BsaI	GGTCTC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	95, 189
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	333
BseDI	CCNNGG	2 cut(s)	95, 189
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMII	CTCAG	2 cut(s)	252, 526
BseNI	ACTGG	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	189
BseSI	GKGCMC	1 cut(s)	520
BseXI	GCAGC	3 cut(s)	265, 420, 438
BshFI	GGCC	2 cut(s)	353, 486
BsiHKAI	GWGCWC	2 cut(s)	249, 324
BsiHKCI	CYCGRG	1 cut(s)	437
BsiSI	CCGG	1 cut(s)	97
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmAI	GTCTC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	195
BsnI	GGCC	2 cut(s)	353, 486
Bso31I	GGTCTC	1 cut(s)	279
BsoBI	CYCGRG	1 cut(s)	437
Bsp1286I	GDGCHC	4 cut(s)	249, 324, 413, 520
Bsp143I	GATC	5 cut(s)	3, 63, 113, 235, 454
BspACI	CCGC	2 cut(s)	413, 487
BspANI	GGCC	2 cut(s)	353, 486
BspCNI	CTCAG	2 cut(s)	253, 525
BspLI	GGNNCC	2 cut(s)	183, 504
BspPI	GGATC	3 cut(s)	121, 230, 449
BspTNI	GGTCTC	1 cut(s)	279
BsrBI	CCGCTC	1 cut(s)	415
BsrI	ACTGG	1 cut(s)	333
BssECI	CCNNGG	2 cut(s)	95, 189
BssMI	GATC	5 cut(s)	3, 63, 113, 235, 454
BssSI	CACGAG	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	189
Bst2BI	CACGAG	1 cut(s)	341
Bst4CI	ACNGT	1 cut(s)	131
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstC8I	GCNNGC	3 cut(s)	91, 413, 431
BstDEI	CTNAG	3 cut(s)	261, 328, 512
BstF5I	GGATG	1 cut(s)	391
BstKTI	GATC	5 cut(s)	6, 66, 116, 238, 457
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	5 cut(s)	3, 63, 113, 235, 454
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 266, 275
BstSCI	CCNGG	1 cut(s)	95
BstSFI	CTRYAG	3 cut(s)	459, 490, 547
BstSLI	GKGCMC	1 cut(s)	520
BstV1I	GCAGC	3 cut(s)	265, 420, 438
BsuRI	GGCC	2 cut(s)	353, 486
BtsCI	GGATG	1 cut(s)	391
BtsI	GCAGTG	1 cut(s)	518
BtsIMutI	CAGTG	2 cut(s)	340, 518
Cac8I	GCNNGC	3 cut(s)	91, 413, 431
CaiI	CAGNNNCTG	1 cut(s)	129
Cfr13I	GGNCC	4 cut(s)	182, 476, 502, 543
DdeI	CTNAG	3 cut(s)	261, 328, 512
DpnI	GATC	5 cut(s)	5, 65, 115, 237, 456
DpnII	GATC	5 cut(s)	3, 63, 113, 235, 454
EaeI	YGGCCR	1 cut(s)	484
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	189
Eco24I	GRGCYC	2 cut(s)	249, 413
Eco31I	GGTCTC	1 cut(s)	279
Eco47I	GGWCC	4 cut(s)	182, 476, 502, 543
Eco53kI	GAGCTC	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	247
EcoO109I	RGGNCCY	2 cut(s)	476, 502
EcoT14I	CCWWGG	1 cut(s)	189
EcoT38I	GRGCYC	2 cut(s)	249, 413
ErhI	CCWWGG	1 cut(s)	189
FaiI	YATR	9 cut(s)	45, 208, 276, 314, 356, 405, 461, 549, 568
FaqI	GGGAC	1 cut(s)	195
FauI	CCCGC	1 cut(s)	420
Fnu4HI	GCNGC	4 cut(s)	279, 427, 434, 487
FokI	GGATG	1 cut(s)	398
FriOI	GRGCYC	2 cut(s)	249, 413
Fsp4HI	GCNGC	4 cut(s)	279, 427, 434, 487
FspBI	CTAG	2 cut(s)	531, 580
GluI	GCNGC	4 cut(s)	279, 427, 434, 487
HaeIII	GGCC	2 cut(s)	353, 486
HapII	CCGG	1 cut(s)	97
HpaII	CCGG	1 cut(s)	97
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	2 cut(s)	134, 338
Hpy188I	TCNGA	2 cut(s)	35, 75
Hpy188III	TCNNGA	3 cut(s)	169, 239, 439
Hpy8I	GTNNAC	2 cut(s)	134, 338
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	2 cut(s)	259, 343
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4V	TGCA	2 cut(s)	9, 426
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 266, 275
HpyF3I	CTNAG	3 cut(s)	261, 328, 512
Kzo9I	GATC	5 cut(s)	3, 63, 113, 235, 454
LmnI	GCTCC	5 cut(s)	36, 45, 76, 252, 420
Lsp1109I	GCAGC	3 cut(s)	265, 420, 438
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	2 cut(s)	531, 580
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	5 cut(s)	5, 65, 115, 237, 456
MbiI	CCGCTC	1 cut(s)	415
MboI	GATC	5 cut(s)	3, 63, 113, 235, 454
MboII	GAAGA	3 cut(s)	6, 316, 376
MhlI	GDGCHC	4 cut(s)	249, 324, 413, 520
MmeI	TCCRAC	2 cut(s)	58, 521
MnlI	CCTC	7 cut(s)	51, 167, 172, 212, 367, 376, 493
MseI	TTAA	2 cut(s)	20, 150
MspA1I	CMGCKG	1 cut(s)	433
MspI	CCGG	1 cut(s)	97
MspR9I	CCNGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	3 cut(s)	37, 266, 275
NciI	CCSGG	1 cut(s)	97
NdeII	GATC	5 cut(s)	3, 63, 113, 235, 454
NlaIV	GGNNCC	2 cut(s)	183, 504
NmuCI	GTSAC	1 cut(s)	251
PaeR7I	CTCGAG	1 cut(s)	437
PkrI	GCNGC	4 cut(s)	280, 428, 435, 488
PpuMI	RGGWCCY	2 cut(s)	476, 502
Psp124BI	GAGCTC	1 cut(s)	249
Psp5II	RGGWCCY	2 cut(s)	476, 502
PspN4I	GGNNCC	2 cut(s)	183, 504
PspPI	GGNCC	4 cut(s)	182, 476, 502, 543
PspPPI	RGGWCCY	2 cut(s)	476, 502
PstNI	CAGNNNCTG	1 cut(s)	129
PvuII	CAGCTG	1 cut(s)	433
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	20, 150
SatI	GCNGC	4 cut(s)	279, 427, 434, 487
Sau3AI	GATC	5 cut(s)	3, 63, 113, 235, 454
Sau96I	GGNCC	4 cut(s)	182, 476, 502, 543
ScrFI	CCNGG	1 cut(s)	97
SduI	GDGCHC	4 cut(s)	249, 324, 413, 520
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	3 cut(s)	459, 490, 547
Sfr274I	CTCGAG	1 cut(s)	437
SinI	GGWCC	4 cut(s)	182, 476, 502, 543
SlaI	CTCGAG	1 cut(s)	437
SmlI	CTYRAG	2 cut(s)	380, 437
SmoI	CTYRAG	2 cut(s)	380, 437
SsiI	CCGC	2 cut(s)	413, 487
SspMI	CTAG	2 cut(s)	531, 580
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	131
TaqI	TCGA	3 cut(s)	62, 318, 438
TauI	GCSGC	1 cut(s)	489
Tru1I	TTAA	2 cut(s)	20, 150
Tru9I	TTAA	2 cut(s)	20, 150
TscAI	CASTG	2 cut(s)	340, 525
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	3 cut(s)	278, 426, 433
Tsp45I	GTSAC	1 cut(s)	251
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	2 cut(s)	340, 525
VpaK11BI	GGWCC	4 cut(s)	182, 476, 502, 543
XhoI	CTCGAG	1 cut(s)	437
XspI	CTAG	2 cut(s)	531, 580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.