Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000404.1

Orthogroup ID

OG0007091

Physical Location & Seq

Genomic Coordinates Forward (+)

62322 .. 63178

Gene Structure 857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000404.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgatctgcacttcttccttaaagccaaagctccgactgctccataaccgacgatggagatcgatcaaagctccgaagtttagaggacactcattggctgatcccgatgagctccgtgaccctgctgagaaggcacactatgctgccagagaccccatcacagccttgaagaaatacatattcgagcacaacttagccagtgaacacgagcagaaggccatagataagaagatagatgaggtgccaactcgccgctcccaactcgccgccagctgctcgagaatgtgtttgccgatcctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

E1_dh

Protein Analysis

100

Amino Acids

11.53

Weight (kDa)

9.76

Isoelectric Point (pI)

68.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01090
fragaria_vesca	FvH4_7g17660
malus_domestica	MD07G1159600.v1.1
prunus_persica	Prupe.2G197700_v2.0.a1
pyrus_communis	pycom01g11280 pycom01g11290 pycom07g15610
rosa_chinensis	RchiOBHm_Chr1g0334521 RchiOBHm_Chr1g0361101
rosa_laevigata	RLG00000027748 RLG00000029447
rosa_multiflora	Rmu_sc0003333.1_g000006 Rmu_sc0034406.1_g000004 Rmu_ssc0000404.1_g000009
rosa_roxburghii	Rroxscaffold_4G00295430 Rroxscaffold_4G00316780
rosa_rugosa	Rorug01G0285600
rosa_samantha	Rh1AG296900 Rh1BG261200 Rh1CG278500 Rh1DG143600 Rh1DG291200
rosa_wichuraiana	Rw0G002890 Rw1G011520 Rw1G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	241
AccBSI	CCGCTC	1 cut(s)	255
AciI	CCGC	2 cut(s)	253, 267
AclWI	GGATC	2 cut(s)	95, 289
AgsI	TTSAA	1 cut(s)	169
AluBI	AGCT	4 cut(s)	31, 71, 112, 273
AluI	AGCT	4 cut(s)	31, 71, 112, 273
Alw21I	GWGCWC	2 cut(s)	114, 189
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	2 cut(s)	95, 289
Ama87I	CYCGRG	1 cut(s)	277
AoxI	GGCC	1 cut(s)	216
ApeKI	GCWGC	2 cut(s)	143, 273
AvaI	CYCGRG	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	241
BanII	GRGCYC	1 cut(s)	114
BauI	CACGAG	1 cut(s)	206
Bbv12I	GWGCWC	2 cut(s)	114, 189
BbvI	GCAGC	2 cut(s)	130, 260
BccI	CCATC	2 cut(s)	48, 164
BcoDI	GTCTC	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	299
BisI	GCNGC	4 cut(s)	144, 253, 267, 274
BlsI	GCNGC	4 cut(s)	145, 254, 268, 275
BmeT110I	CYCGRG	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	243
Bsa29I	ATCGAT	1 cut(s)	62
BsaBI	GATNNNNATC	1 cut(s)	58
BsaI	GGTCTC	1 cut(s)	144
Bse1I	ACTGG	1 cut(s)	198
Bse8I	GATNNNNATC	1 cut(s)	58
BseCI	ATCGAT	1 cut(s)	62
BseJI	GATNNNNATC	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	198
BseXI	GCAGC	2 cut(s)	130, 260
BshFI	GGCC	1 cut(s)	218
BshNI	GGYRCC	1 cut(s)	241
BshVI	ATCGAT	1 cut(s)	62
BsiHKAI	GWGCWC	2 cut(s)	114, 189
BsiHKCI	CYCGRG	1 cut(s)	277
BsmAI	GTCTC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	218
Bso31I	GGTCTC	1 cut(s)	144
BsoBI	CYCGRG	1 cut(s)	277
Bsp1286I	GDGCHC	2 cut(s)	114, 189
Bsp143I	GATC	5 cut(s)	3, 59, 63, 100, 294
BspACI	CCGC	2 cut(s)	253, 267
BspANI	GGCC	1 cut(s)	218
BspCNI	CTCAG	1 cut(s)	118
BspDI	ATCGAT	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	243
BspPI	GGATC	2 cut(s)	95, 289
BspT107I	GGYRCC	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	144
BsrBI	CCGCTC	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	198
BssMI	GATC	5 cut(s)	3, 59, 63, 100, 294
BssSI	CACGAG	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	206
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	2 cut(s)	126, 193
BstKTI	GATC	5 cut(s)	6, 62, 66, 103, 297
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	5 cut(s)	3, 59, 63, 100, 294
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 131, 140
BstSFI	CTRYAG	1 cut(s)	299
BstV1I	GCAGC	2 cut(s)	130, 260
Bsu15I	ATCGAT	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	218
BsuTUI	ATCGAT	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	271
ClaI	ATCGAT	1 cut(s)	62
CviJI	RGCY	9 cut(s)	25, 31, 71, 98, 112, 164, 197, 218, 273
CviKI_1	RGCY	9 cut(s)	25, 31, 71, 98, 112, 164, 197, 218, 273
DdeI	CTNAG	2 cut(s)	126, 193
DpnI	GATC	5 cut(s)	5, 61, 65, 102, 296
DpnII	GATC	5 cut(s)	3, 59, 63, 100, 294
Ecl136II	GAGCTC	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	144
Eco53kI	GAGCTC	1 cut(s)	112
Eco88I	CYCGRG	1 cut(s)	277
EcoICRI	GAGCTC	1 cut(s)	112
EcoT38I	GRGCYC	1 cut(s)	114
FaiI	YATR	5 cut(s)	45, 141, 179, 221, 301
Fnu4HI	GCNGC	4 cut(s)	144, 253, 267, 274
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	4 cut(s)	144, 253, 267, 274
GluI	GCNGC	4 cut(s)	144, 253, 267, 274
HaeIII	GGCC	1 cut(s)	218
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	2 cut(s)	35, 75
Hpy188III	TCNNGA	2 cut(s)	104, 279
Hpy8I	GTNNAC	1 cut(s)	203
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	2 cut(s)	124, 208
HpyCH4V	TGCA	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 131, 140
HpyF3I	CTNAG	2 cut(s)	126, 193
Kzo9I	GATC	5 cut(s)	3, 59, 63, 100, 294
LmnI	GCTCC	5 cut(s)	36, 45, 76, 117, 260
LpnPI	CCDG	4 cut(s)	135, 160, 211, 283
Lsp1109I	GCAGC	2 cut(s)	130, 260
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	5 cut(s)	5, 61, 65, 102, 296
MbiI	CCGCTC	1 cut(s)	255
MboI	GATC	5 cut(s)	3, 59, 63, 100, 294
MboII	GAAGA	3 cut(s)	6, 181, 241
MhlI	GDGCHC	2 cut(s)	114, 189
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	2 cut(s)	77, 232
MseI	TTAA	1 cut(s)	20
MspA1I	CMGCKG	1 cut(s)	273
MwoI	GCNNNNNNNGC	3 cut(s)	37, 131, 140
NdeII	GATC	5 cut(s)	3, 59, 63, 100, 294
NlaIV	GGNNCC	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	116
PaeR7I	CTCGAG	1 cut(s)	277
PkrI	GCNGC	4 cut(s)	145, 254, 268, 275
Psp124BI	GAGCTC	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	243
PvuII	CAGCTG	1 cut(s)	273
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	20
SatI	GCNGC	4 cut(s)	144, 253, 267, 274
Sau3AI	GATC	5 cut(s)	3, 59, 63, 100, 294
SduI	GDGCHC	2 cut(s)	114, 189
SetI	ASST	5 cut(s)	33, 73, 114, 243, 275
SfcI	CTRYAG	1 cut(s)	299
Sfr274I	CTCGAG	1 cut(s)	277
SlaI	CTCGAG	1 cut(s)	277
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
SsiI	CCGC	2 cut(s)	253, 267
SstI	GAGCTC	1 cut(s)	114
TaqI	TCGA	3 cut(s)	62, 183, 278
TauI	GCSGC	2 cut(s)	255, 269
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	2 cut(s)	143, 273
Tsp45I	GTSAC	1 cut(s)	116
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	1 cut(s)	205
XhoI	CTCGAG	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.