Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007091

Physical Location & Seq

Genomic Coordinates Forward (+)

23342133 .. 23344846

Gene Structure 2714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1159600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGTCCTTCACCTCCGCCACCAATTTGGCCCAGCCCCTCCAGCTCAATTCTGCCGCCGCCAGCCCCAGATCCAATGACAAGCCCTCCCTCCTGCTCCCCCCCAAGGCATCCTCTTTTCTCGGATCTACCCGCAAGTTCCGACCCGCTTCCCTCTCTCATTCCAGTGCTCACCGCCGATCCGCCGTCGTTGCCGTCTCCGAAGCTGTTAAGGAGAAGAAGGTCCAGGCTTCCTGCAATCTGCTAATAACAAAAGAGGAAGGATTGGAGCTGTATGAAGACATGGTATTGGGTCGCTCTTTCGAGGACATGTGTGCTCAGATGTATTACAGAGGCAAAATGTTCGGGTTCGTTCACCTTTACAATGGCCAAGAAGCCGTGTCAACTGGGTTTATCAAGCTTACAAAGAAGGAGGATTCTGTGGTGAGCACATACCGTGATCACGTGCACTCGTTGAGTAAGGGTGTCCCTGCTCGTGAGGTGATGAGTGAGCTCTTTGGAAAGGCTACTGGTTGTTGCCGAGGCCAAGGTGGTTCTATGCACATGTTTTCGAAAGAGTACAATGTGCTTGGTGGGTTCGCATTTATTGGTGAAGGTATACCAGTGGCAACAGGTGCAGCATTCTCCTCTAAGTACAGGAGGGAAGTGATGAAACAGGCAGACTGTGATCACGTGACTTTGGCATTTTTTGGAGATGGAACTGCTAATAACGGCCAGTTCTTTGAGTGTTTGAACATGGCAGCGTTGTGGAAATTGCCGATTATTTTCGTTGTGGAGAACAATTTGTGGGCCATTGGAATGTCGCATTTGAGGGCTACTTCTGATCCCGAAATTTGGAAGAAGGGGCCTGCATTTGGTATGCCAGGTGTTCATGTGGATGGTATGGATGTGTTGAAGGTGAGGGAGGTGGCAAAGGAGGCGATTGGAAGGGCCAGGAGAGGAGAAGGGCCAACTTTGGTAGAATGTGAAACATACAGGTTCAGAGGACACTCATTGGCAGATCCTGATGAGCTTCGTGACCCTGCTGAGAAGGCACACTACGCTGCCAGAGATCCCATCACTGCCCTCAAGGAATACTTACTTGAGAACAATTTGGCGACTGAACAAGACTTGAAGGCCATCCATAAGAAGATCGATGAGTTGGTTGAGGATGCCGTTGAGTTTGCAGATGAGAGCCCCCTTCCACCTCGCAGCCAGCTGCTCGAGAACGTGTTTGCCGATCCCAAGGGTTTTGGAATCGGGCCTGATGGCAGTTACAGATGCGAGGATCCTAAATTCACTCAGGGCACTGCTCATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

E1_dh

Protein Analysis

433

Amino Acids

47.47

Weight (kDa)

6.38

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1_dh	PF00676	93 - 394	5.6e-84	Dehydrogenase E1 component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01090
fragaria_vesca	FvH4_7g17660
malus_domestica	MD07G1159600.v1.1
prunus_persica	Prupe.2G197700_v2.0.a1
pyrus_communis	pycom01g11280 pycom01g11290 pycom07g15610
rosa_chinensis	RchiOBHm_Chr1g0334521 RchiOBHm_Chr1g0361101
rosa_laevigata	RLG00000027748 RLG00000029447
rosa_multiflora	Rmu_sc0003333.1_g000006 Rmu_sc0034406.1_g000004 Rmu_ssc0000404.1_g000009
rosa_roxburghii	Rroxscaffold_4G00295430 Rroxscaffold_4G00316780
rosa_rugosa	Rorug01G0285600
rosa_samantha	Rh1AG296900 Rh1BG261200 Rh1CG278500 Rh1DG143600 Rh1DG291200
rosa_wichuraiana	Rw0G002890 Rw1G011520 Rw1G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	595
AciI	CCGC	7 cut(s)	15, 54, 57, 130, 144, 172, 180
AclWI	GGATC	9 cut(s)	63, 130, 171, 815, 992, 1043, 1211, 1259, 1272
AcoI	YGGCCR	2 cut(s)	364, 709
AcsI	RAATTY	2 cut(s)	828, 1271
AcvI	CACGTG	2 cut(s)	442, 670
AfaI	GTAC	2 cut(s)	557, 632
AfiI	CCNNNNNNNGG	3 cut(s)	103, 831, 851
AflIII	ACRYGT	3 cut(s)	306, 540, 1206
AgsI	TTSAA	3 cut(s)	730, 892, 1111
AjnI	CCWGG	3 cut(s)	222, 859, 929
AluBI	AGCT	7 cut(s)	43, 203, 268, 397, 490, 1009, 1195
AluI	AGCT	7 cut(s)	43, 203, 268, 397, 490, 1009, 1195
Alw21I	GWGCWC	5 cut(s)	169, 316, 428, 447, 492
Alw26I	GTCTC	1 cut(s)	199
Alw44I	GTGCAC	1 cut(s)	443
AlwI	GGATC	9 cut(s)	63, 130, 171, 815, 992, 1043, 1211, 1259, 1272
AlwNI	CAGNNNCTG	1 cut(s)	1001
Ama87I	CYCGRG	1 cut(s)	1199
ApaLI	GTGCAC	1 cut(s)	443
ApeKI	GCWGC	5 cut(s)	614, 737, 1040, 1188, 1195
ApoI	RAATTY	2 cut(s)	828, 1271
AspS9I	GGNCC	7 cut(s)	28, 220, 786, 842, 927, 944, 1238
AsuHPI	GGTGA	6 cut(s)	161, 344, 433, 490, 599, 907
AsuII	TTCGAA	1 cut(s)	548
AvaI	CYCGRG	1 cut(s)	1199
AvaII	GGWCC	1 cut(s)	220
BaeGI	GKGCMC	2 cut(s)	447, 1286
BalI	TGGCCA	1 cut(s)	366
BamHI	GGATCC	1 cut(s)	1264
BanII	GRGCYC	2 cut(s)	492, 1175
BarI	GAAGNNNNNNTAC	2 cut(s)	1019, 1051
BauI	CACGAG	1 cut(s)	471
BbrPI	CACGTG	2 cut(s)	442, 670
BbsI	GAAGAC	1 cut(s)	282
Bbv12I	GWGCWC	5 cut(s)	169, 316, 428, 447, 492
BbvI	GCAGC	5 cut(s)	626, 749, 1027, 1182, 1200
BccI	CCATC	5 cut(s)	686, 869, 1061, 1124, 1238
BceAI	ACGGC	5 cut(s)	167, 176, 359, 724, 1136
BcgI	CGANNNNNNTGC	2 cut(s)	322, 356
BciT130I	CCWGG	3 cut(s)	224, 861, 931
BclI	TGATCA	2 cut(s)	436, 664
BcoDI	GTCTC	1 cut(s)	199
BisI	GCNGC	7 cut(s)	54, 57, 615, 738, 1041, 1189, 1196
BlsI	GCNGC	7 cut(s)	55, 58, 616, 739, 1042, 1190, 1197
Bme1390I	CCNGG	3 cut(s)	224, 861, 931
Bme18I	GGWCC	1 cut(s)	220
BmeT110I	CYCGRG	1 cut(s)	1199
BmgT120I	GGNCC	7 cut(s)	28, 220, 786, 842, 927, 944, 1238
BmiI	GGNNCC	2 cut(s)	843, 1266
BmrFI	CCNGG	3 cut(s)	224, 861, 931
BmrI	ACTGGG	1 cut(s)	393
BmsI	GCATC	3 cut(s)	116, 1138, 1247
BmuI	ACTGGG	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	23
Bpu14I	TTCGAA	1 cut(s)	548
BpuEI	CTTGAG	2 cut(s)	1049, 1100
Bsa29I	ATCGAT	1 cut(s)	1131
BsaAI	YACGTR	2 cut(s)	442, 670
BsaJI	CCNNGG	4 cut(s)	102, 517, 523, 1221
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 831, 851
Bse1I	ACTGG	5 cut(s)	162, 388, 511, 599, 712
BseBI	CCWGG	3 cut(s)	224, 861, 931
BseCI	ATCGAT	1 cut(s)	1131
BseDI	CCNNGG	4 cut(s)	102, 517, 523, 1221
BseGI	GGATG	5 cut(s)	107, 880, 889, 1116, 1153
BseLI	CCNNNNNNNGG	3 cut(s)	103, 831, 851
BseMII	CTCAG	3 cut(s)	329, 1014, 1292
BseNI	ACTGG	5 cut(s)	162, 388, 511, 599, 712
BseRI	GAGGAG	2 cut(s)	613, 951
BseSI	GKGCMC	2 cut(s)	447, 1286
BseXI	GCAGC	5 cut(s)	626, 749, 1027, 1182, 1200
BseYI	CCCAGC	1 cut(s)	30
BsgI	GTGCAG	1 cut(s)	633
BshVI	ATCGAT	1 cut(s)	1131
BsiHKAI	GWGCWC	5 cut(s)	169, 316, 428, 447, 492
BsiHKCI	CYCGRG	1 cut(s)	1199
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	3 cut(s)	103, 831, 851
BsmAI	GTCTC	1 cut(s)	199
BsmBI	CGTCTC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	449
BsmI	GAATGC	1 cut(s)	617
BsoBI	CYCGRG	1 cut(s)	1199
Bsp119I	TTCGAA	1 cut(s)	548
Bsp1286I	GDGCHC	7 cut(s)	169, 316, 428, 447, 492, 1175, 1286
BspACI	CCGC	7 cut(s)	15, 54, 57, 130, 144, 172, 180
BspCNI	CTCAG	3 cut(s)	328, 1015, 1291
BspDI	ATCGAT	1 cut(s)	1131
BspLI	GGNNCC	2 cut(s)	843, 1266
BspPI	GGATC	9 cut(s)	63, 130, 171, 815, 992, 1043, 1211, 1259, 1272
BspT104I	TTCGAA	1 cut(s)	548
BsrI	ACTGG	5 cut(s)	162, 388, 511, 599, 712
BssECI	CCNNGG	4 cut(s)	102, 517, 523, 1221
BssNAI	GTATAC	1 cut(s)	596
BssSI	CACGAG	1 cut(s)	471
BssT1I	CCWWGG	3 cut(s)	102, 523, 1221
Bst1107I	GTATAC	1 cut(s)	596
Bst2BI	CACGAG	1 cut(s)	471
Bst2UI	CCWGG	3 cut(s)	224, 861, 931
Bst4CI	ACNGT	2 cut(s)	434, 662
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstBAI	YACGTR	2 cut(s)	442, 670
BstBI	TTCGAA	1 cut(s)	548
BstC8I	GCNNGC	3 cut(s)	61, 846, 1193
BstDEI	CTNAG	4 cut(s)	315, 627, 1023, 1278
BstF5I	GGATG	5 cut(s)	107, 880, 889, 1116, 1153
BstMAI	GTCTC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	6 cut(s)	40, 188, 611, 914, 1028, 1037
BstNI	CCWGG	3 cut(s)	224, 861, 931
BstNSI	RCATGY	2 cut(s)	310, 544
BstSCI	CCNGG	3 cut(s)	222, 859, 929
BstSLI	GKGCMC	2 cut(s)	447, 1286
BstV1I	GCAGC	5 cut(s)	626, 749, 1027, 1182, 1200
BstV2I	GAAGAC	1 cut(s)	282
BstX2I	RGATCY	5 cut(s)	68, 122, 997, 1048, 1264
BstXI	CCANNNNNNTGG	1 cut(s)	25
BstYI	RGATCY	5 cut(s)	68, 122, 997, 1048, 1264
BstZ17I	GTATAC	1 cut(s)	596
Bsu15I	ATCGAT	1 cut(s)	1131
BsuTUI	ATCGAT	1 cut(s)	1131
BtsCI	GGATG	5 cut(s)	107, 880, 889, 1116, 1153
BtsI	GCAGTG	2 cut(s)	1056, 1284
BtsIMutI	CAGTG	4 cut(s)	169, 606, 1056, 1284
Cac8I	GCNNGC	3 cut(s)	61, 846, 1193
CaiI	CAGNNNCTG	1 cut(s)	1001
Cfr13I	GGNCC	7 cut(s)	28, 220, 786, 842, 927, 944, 1238
ClaI	ATCGAT	1 cut(s)	1131
Csp6I	GTAC	2 cut(s)	556, 631
CviAII	CATG	6 cut(s)	280, 307, 541, 733, 869, 1292
CviQI	GTAC	2 cut(s)	556, 631
DdeI	CTNAG	4 cut(s)	315, 627, 1023, 1278
EaeI	YGGCCR	2 cut(s)	364, 709
EciI	GGCGGA	2 cut(s)	4, 169
Ecl136II	GAGCTC	1 cut(s)	490
Eco130I	CCWWGG	3 cut(s)	102, 523, 1221
Eco24I	GRGCYC	2 cut(s)	492, 1175
Eco47I	GGWCC	1 cut(s)	220
Eco53kI	GAGCTC	1 cut(s)	490
Eco72I	CACGTG	2 cut(s)	442, 670
Eco88I	CYCGRG	1 cut(s)	1199
EcoICRI	GAGCTC	1 cut(s)	490
EcoO109I	RGGNCCY	1 cut(s)	842
EcoRII	CCWGG	3 cut(s)	222, 859, 929
EcoT14I	CCWWGG	3 cut(s)	102, 523, 1221
EcoT38I	GRGCYC	2 cut(s)	492, 1175
ErhI	CCWWGG	3 cut(s)	102, 523, 1221
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	6 cut(s)	283, 310, 544, 736, 872, 1295
FalI	AAGNNNNNCTT	2 cut(s)	1058, 1090
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	6 cut(s)	279, 306, 540, 732, 868, 1291
FauI	CCCGC	2 cut(s)	137, 151
FbaI	TGATCA	2 cut(s)	436, 664
FblI	GTMKAC	1 cut(s)	595
Fnu4HI	GCNGC	7 cut(s)	54, 57, 615, 738, 1041, 1189, 1196
FokI	GGATG	5 cut(s)	94, 887, 896, 1103, 1160
FriOI	GRGCYC	2 cut(s)	492, 1175
Fsp4HI	GCNGC	7 cut(s)	54, 57, 615, 738, 1041, 1189, 1196
GluI	GCNGC	7 cut(s)	54, 57, 615, 738, 1041, 1189, 1196
GsaI	CCCAGC	1 cut(s)	34
GsuI	CTGGAG	1 cut(s)	23
Hin1II	CATG	6 cut(s)	283, 310, 544, 736, 872, 1295
HincII	GTYRAC	1 cut(s)	381
HindII	GTYRAC	1 cut(s)	381
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	2 cut(s)	413, 1233
HphI	GGTGA	6 cut(s)	161, 344, 433, 490, 599, 907
Hpy166II	GTNNAC	4 cut(s)	352, 381, 445, 596
Hpy188I	TCNGA	6 cut(s)	122, 140, 199, 318, 820, 980
Hpy188III	TCNNGA	5 cut(s)	473, 824, 1001, 1013, 1201
Hpy8I	GTNNAC	4 cut(s)	352, 381, 445, 596
Hpy99I	CGWCG	1 cut(s)	188
HpyCH4III	ACNGT	2 cut(s)	434, 662
HpyCH4IV	ACGT	3 cut(s)	441, 669, 1206
HpyCH4V	TGCA	6 cut(s)	234, 445, 538, 614, 848, 1163
HpyF10VI	GCNNNNNNNGC	6 cut(s)	40, 188, 611, 914, 1028, 1037
HpyF3I	CTNAG	4 cut(s)	315, 627, 1023, 1278
HpySE526I	ACGT	3 cut(s)	441, 669, 1206
Hsp92II	CATG	6 cut(s)	283, 310, 544, 736, 872, 1295
Ksp22I	TGATCA	2 cut(s)	436, 664
LmnI	GCTCC	2 cut(s)	99, 265
Lsp1109I	GCAGC	5 cut(s)	626, 749, 1027, 1182, 1200
LweI	GCATC	3 cut(s)	116, 1138, 1247
MaeII	ACGT	3 cut(s)	441, 669, 1206
MaeIII	GTNAC	3 cut(s)	670, 1013, 1250
MboII	GAAGA	4 cut(s)	226, 287, 847, 1138
MflI	RGATCY	5 cut(s)	68, 122, 997, 1048, 1264
MhlI	GDGCHC	7 cut(s)	169, 316, 428, 447, 492, 1175, 1286
MlsI	TGGCCA	1 cut(s)	366
MluCI	AATT	7 cut(s)	22, 46, 749, 778, 828, 1087, 1271
MluNI	TGGCCA	1 cut(s)	366
MmeI	TCCRAC	1 cut(s)	163
Mox20I	TGGCCA	1 cut(s)	366
MscI	TGGCCA	1 cut(s)	366
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	3 cut(s)	162, 794, 873
Msp20I	TGGCCA	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	1195
MspR9I	CCNGG	3 cut(s)	224, 861, 931
Mva1269I	GAATGC	1 cut(s)	617
MvaI	CCWGG	3 cut(s)	224, 861, 931
MwoI	GCNNNNNNNGC	6 cut(s)	40, 188, 611, 914, 1028, 1037
NlaIII	CATG	6 cut(s)	283, 310, 544, 736, 872, 1295
NlaIV	GGNNCC	2 cut(s)	843, 1266
NmeAIII	GCCGAG	1 cut(s)	542
NmuCI	GTSAC	2 cut(s)	670, 1013
NspI	RCATGY	2 cut(s)	310, 544
NspV	TTCGAA	1 cut(s)	548
PaeR7I	CTCGAG	1 cut(s)	1199
PciI	ACATGT	2 cut(s)	306, 540
PcsI	WCGNNNNNNNCGW	1 cut(s)	1212
PctI	GAATGC	1 cut(s)	617
PfeI	GAWTC	2 cut(s)	413, 1233
PkrI	GCNGC	7 cut(s)	55, 58, 616, 739, 1042, 1190, 1197
PmaCI	CACGTG	2 cut(s)	442, 670
PmlI	CACGTG	2 cut(s)	442, 670
Ppu21I	YACGTR	2 cut(s)	442, 670
PscI	ACATGT	2 cut(s)	306, 540
Psp124BI	GAGCTC	1 cut(s)	492
Psp6I	CCWGG	3 cut(s)	222, 859, 929
PspCI	CACGTG	2 cut(s)	442, 670
PspFI	CCCAGC	1 cut(s)	30
PspGI	CCWGG	3 cut(s)	222, 859, 929
PspN4I	GGNNCC	2 cut(s)	843, 1266
PspPI	GGNCC	7 cut(s)	28, 220, 786, 842, 927, 944, 1238
PstNI	CAGNNNCTG	1 cut(s)	1001
PsuI	RGATCY	5 cut(s)	68, 122, 997, 1048, 1264
PvuII	CAGCTG	1 cut(s)	1195
RsaI	GTAC	2 cut(s)	557, 632
RsaNI	GTAC	2 cut(s)	556, 631
RseI	CAYNNNNRTG	3 cut(s)	162, 794, 873
SacI	GAGCTC	1 cut(s)	492
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	7 cut(s)	54, 57, 615, 738, 1041, 1189, 1196
Sau96I	GGNCC	7 cut(s)	28, 220, 786, 842, 927, 944, 1238
ScrFI	CCNGG	3 cut(s)	224, 861, 931
SduI	GDGCHC	7 cut(s)	169, 316, 428, 447, 492, 1175, 1286
SfaNI	GCATC	3 cut(s)	116, 1138, 1247
Sfr274I	CTCGAG	1 cut(s)	1199
SfuI	TTCGAA	1 cut(s)	548
SinI	GGWCC	1 cut(s)	220
SlaI	CTCGAG	1 cut(s)	1199
SmiMI	CAYNNNNRTG	3 cut(s)	162, 794, 873
SmlI	CTYRAG	3 cut(s)	1064, 1079, 1199
SmoI	CTYRAG	3 cut(s)	1064, 1079, 1199
Sse9I	AATT	7 cut(s)	22, 46, 749, 778, 828, 1087, 1271
SsiI	CCGC	7 cut(s)	15, 54, 57, 130, 144, 172, 180
SstI	GAGCTC	1 cut(s)	492
StyD4I	CCNGG	3 cut(s)	222, 859, 929
StyI	CCWWGG	3 cut(s)	102, 523, 1221
TaaI	ACNGT	2 cut(s)	434, 662
TaiI	ACGT	3 cut(s)	444, 672, 1209
TaqI	TCGA	4 cut(s)	300, 548, 1131, 1200
TasI	AATT	7 cut(s)	22, 46, 749, 778, 828, 1087, 1271
TatI	WGTACW	2 cut(s)	555, 630
TauI	GCSGC	2 cut(s)	56, 59
TfiI	GAWTC	2 cut(s)	413, 1233
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	4 cut(s)	169, 606, 1063, 1291
TseFI	GTSAC	2 cut(s)	670, 1013
TseI	GCWGC	5 cut(s)	614, 737, 1040, 1188, 1195
Tsp45I	GTSAC	2 cut(s)	670, 1013
TspDTI	ATGAA	3 cut(s)	288, 662, 857
TspRI	CASTG	4 cut(s)	169, 606, 1063, 1291
VneI	GTGCAC	1 cut(s)	443
VpaK11BI	GGWCC	1 cut(s)	220
XapI	RAATTY	2 cut(s)	828, 1271
XceI	RCATGY	2 cut(s)	310, 544
XhoI	CTCGAG	1 cut(s)	1199
XmiI	GTMKAC	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.