Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007091

Physical Location & Seq

Genomic Coordinates Forward (+)

41712008 .. 41715806

Gene Structure 3799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00316780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCTGCAGTGAGATACTTTAACCTGTCCCTTACTCTTTACCGGAGAAGAAACTTGACTACGGCTAGACACTGGAAGCTGCAGCAATATATTTGCATGGGGAGCCAACAAAATAAGTGTATGAATCATGCAGCTGAGAAGGCACACTATGCTGCCAGAGACCCAATCACAGCCTTGAAGAAATACATATTCGAGCACAACTTAGCCAGTGAACACGAGCTGAAGGCCATAGATAAGAAGATAGATGAGGTGTTTGAGGATGCTGCTGAGTTCGCCTATGAGAGTCCGCTCCCAACTCGCAGCCAGCTGCTCGAGAATGTGTTTGCCGATCCTAAAGGCTTTGGAATAGGGCCTGATGGCCGCTACAGATGTGAGGACCCTAAGTTTACTCGGGCACTGCCGAAGTCTAGTCTTTGTTGGACCTATATCTCTGTTCCTAGATGCATGCCGTTAAATTTTAGTTACTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

E1_dh

Protein Analysis

156

Amino Acids

18.09

Weight (kDa)

8.88

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1_dh	PF00676	50 - 98	6.2e-06	Dehydrogenase E1 component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01090
fragaria_vesca	FvH4_7g17660
malus_domestica	MD07G1159600.v1.1
prunus_persica	Prupe.2G197700_v2.0.a1
pyrus_communis	pycom01g11280 pycom01g11290 pycom07g15610
rosa_chinensis	RchiOBHm_Chr1g0334521 RchiOBHm_Chr1g0361101
rosa_laevigata	RLG00000027748 RLG00000029447
rosa_multiflora	Rmu_sc0003333.1_g000006 Rmu_sc0034406.1_g000004 Rmu_ssc0000404.1_g000009
rosa_roxburghii	Rroxscaffold_4G00295430 Rroxscaffold_4G00316780
rosa_rugosa	Rorug01G0285600
rosa_samantha	Rh1AG296900 Rh1BG261200 Rh1CG278500 Rh1DG143600 Rh1DG291200
rosa_wichuraiana	Rw0G002890 Rw1G011520 Rw1G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	289
AciI	CCGC	2 cut(s)	287, 361
AclWI	GGATC	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	358
AcsI	RAATTY	1 cut(s)	454
AcuI	CTGAAG	1 cut(s)	242
AgsI	TTSAA	1 cut(s)	178
AluBI	AGCT	4 cut(s)	79, 134, 220, 307
AluI	AGCT	4 cut(s)	79, 134, 220, 307
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	1 cut(s)	323
Ama87I	CYCGRG	2 cut(s)	311, 390
AoxI	GGCC	3 cut(s)	225, 350, 358
ApeKI	GCWGC	8 cut(s)	5, 79, 82, 131, 152, 263, 300, 307
ApoI	RAATTY	1 cut(s)	454
AspS9I	GGNCC	3 cut(s)	350, 376, 420
AvaI	CYCGRG	2 cut(s)	311, 390
AvaII	GGWCC	2 cut(s)	376, 420
BaeGI	GKGCMC	1 cut(s)	397
BauI	CACGAG	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	7 cut(s)	66, 94, 139, 143, 250, 294, 312
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	2 cut(s)	78, 433
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	4 cut(s)	66, 408, 438, 469
BfmI	CTRYAG	3 cut(s)	6, 80, 364
BisI	GCNGC	9 cut(s)	6, 80, 83, 132, 153, 264, 301, 308, 361
BlsI	GCNGC	9 cut(s)	7, 81, 84, 133, 154, 265, 302, 309, 362
Bme18I	GGWCC	2 cut(s)	376, 420
BmeT110I	CYCGRG	2 cut(s)	311, 390
BmgT120I	GGNCC	3 cut(s)	350, 376, 420
BmiI	GGNNCC	2 cut(s)	104, 378
BmsI	GCATC	2 cut(s)	250, 431
BsaI	GGTCTC	1 cut(s)	153
BsaWI	WCCGGW	1 cut(s)	42
Bse1I	ACTGG	2 cut(s)	77, 207
BseGI	GGATG	1 cut(s)	265
BseMII	CTCAG	2 cut(s)	126, 258
BseNI	ACTGG	2 cut(s)	77, 207
BseSI	GKGCMC	1 cut(s)	397
BseXI	GCAGC	7 cut(s)	66, 94, 139, 143, 250, 294, 312
BshFI	GGCC	3 cut(s)	227, 352, 360
BsiHKAI	GWGCWC	1 cut(s)	198
BsiHKCI	CYCGRG	2 cut(s)	311, 390
BsiSI	CCGG	1 cut(s)	43
BslFI	GGGAC	1 cut(s)	13
BsmAI	GTCTC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	13
BsnI	GGCC	3 cut(s)	227, 352, 360
Bso31I	GGTCTC	1 cut(s)	153
BsoBI	CYCGRG	2 cut(s)	311, 390
Bsp1286I	GDGCHC	2 cut(s)	198, 397
Bsp143I	GATC	1 cut(s)	328
BspACI	CCGC	2 cut(s)	287, 361
BspANI	GGCC	3 cut(s)	227, 352, 360
BspCNI	CTCAG	2 cut(s)	127, 259
BspLI	GGNNCC	2 cut(s)	104, 378
BspMAI	CTGCAG	2 cut(s)	10, 84
BspPI	GGATC	1 cut(s)	323
BspTNI	GGTCTC	1 cut(s)	153
BsrBI	CCGCTC	1 cut(s)	289
BsrI	ACTGG	2 cut(s)	77, 207
BssMI	GATC	1 cut(s)	328
BssSI	CACGAG	1 cut(s)	215
Bst2BI	CACGAG	1 cut(s)	215
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	305, 446
BstDEI	CTNAG	4 cut(s)	135, 202, 267, 381
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 140, 149, 272
BstNSI	RCATGY	1 cut(s)	448
BstSFI	CTRYAG	3 cut(s)	6, 80, 364
BstSLI	GKGCMC	1 cut(s)	397
BstV1I	GCAGC	7 cut(s)	66, 94, 139, 143, 250, 294, 312
BsuRI	GGCC	3 cut(s)	227, 352, 360
BtsCI	GGATG	1 cut(s)	265
BtsI	GCAGTG	2 cut(s)	15, 395
BtsIMutI	CAGTG	4 cut(s)	15, 70, 214, 395
Cac8I	GCNNGC	2 cut(s)	305, 446
Cfr13I	GGNCC	3 cut(s)	350, 376, 420
CviAII	CATG	3 cut(s)	97, 128, 445
DdeI	CTNAG	4 cut(s)	135, 202, 267, 381
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	358
Eco31I	GGTCTC	1 cut(s)	153
Eco47I	GGWCC	2 cut(s)	376, 420
Eco57I	CTGAAG	1 cut(s)	242
Eco88I	CYCGRG	2 cut(s)	311, 390
EcoO109I	RGGNCCY	2 cut(s)	350, 376
EcoT22I	ATGCAT	1 cut(s)	446
FaeI	CATG	3 cut(s)	100, 131, 448
FaqI	GGGAC	1 cut(s)	13
FatI	CATG	3 cut(s)	96, 127, 444
Fnu4HI	GCNGC	9 cut(s)	6, 80, 83, 132, 153, 264, 301, 308, 361
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	9 cut(s)	6, 80, 83, 132, 153, 264, 301, 308, 361
FspBI	CTAG	4 cut(s)	66, 408, 438, 469
GluI	GCNGC	9 cut(s)	6, 80, 83, 132, 153, 264, 301, 308, 361
HaeIII	GGCC	3 cut(s)	227, 352, 360
HapII	CCGG	1 cut(s)	43
Hin1II	CATG	3 cut(s)	100, 131, 448
HinfI	GANTC	2 cut(s)	124, 283
HpaII	CCGG	1 cut(s)	43
Hpy166II	GTNNAC	2 cut(s)	212, 387
Hpy188III	TCNNGA	1 cut(s)	313
Hpy8I	GTNNAC	2 cut(s)	212, 387
HpyAV	CCTTC	2 cut(s)	133, 217
HpyCH4V	TGCA	5 cut(s)	8, 82, 96, 131, 444
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 140, 149, 272
HpyF3I	CTNAG	4 cut(s)	135, 202, 267, 381
Hsp92II	CATG	3 cut(s)	100, 131, 448
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	2 cut(s)	102, 294
LpnPI	CCDG	7 cut(s)	38, 56, 58, 169, 220, 317, 366
Lsp1109I	GCAGC	7 cut(s)	66, 94, 139, 143, 250, 294, 312
LweI	GCATC	2 cut(s)	250, 431
MaeI	CTAG	4 cut(s)	66, 408, 438, 469
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	1 cut(s)	330
MbiI	CCGCTC	1 cut(s)	289
MboI	GATC	1 cut(s)	328
MboII	GAAGA	3 cut(s)	60, 190, 250
MhlI	GDGCHC	2 cut(s)	198, 397
MluCI	AATT	1 cut(s)	454
MlyI	GAGTC	1 cut(s)	292
MmeI	TCCRAC	1 cut(s)	398
MnlI	CCTC	3 cut(s)	241, 250, 367
Mph1103I	ATGCAT	1 cut(s)	446
MseI	TTAA	2 cut(s)	21, 452
MspA1I	CMGCKG	2 cut(s)	134, 307
MspI	CCGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	4 cut(s)	102, 140, 149, 272
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	3 cut(s)	100, 131, 448
NlaIV	GGNNCC	2 cut(s)	104, 378
NsiI	ATGCAT	1 cut(s)	446
NspI	RCATGY	1 cut(s)	448
PaeI	GCATGC	1 cut(s)	448
PaeR7I	CTCGAG	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	124
PkrI	GCNGC	9 cut(s)	7, 81, 84, 133, 154, 265, 302, 309, 362
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
PpuMI	RGGWCCY	1 cut(s)	376
Psp5II	RGGWCCY	1 cut(s)	376
PspN4I	GGNNCC	2 cut(s)	104, 378
PspPI	GGNCC	3 cut(s)	350, 376, 420
PspPPI	RGGWCCY	1 cut(s)	376
PstI	CTGCAG	2 cut(s)	10, 84
PvuII	CAGCTG	2 cut(s)	134, 307
SaqAI	TTAA	2 cut(s)	21, 452
SatI	GCNGC	9 cut(s)	6, 80, 83, 132, 153, 264, 301, 308, 361
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	3 cut(s)	350, 376, 420
SchI	GAGTC	1 cut(s)	292
SduI	GDGCHC	2 cut(s)	198, 397
SetI	ASST	7 cut(s)	27, 81, 136, 222, 252, 309, 425
SfaNI	GCATC	2 cut(s)	250, 431
SfcI	CTRYAG	3 cut(s)	6, 80, 364
Sfr274I	CTCGAG	1 cut(s)	311
SinI	GGWCC	2 cut(s)	376, 420
SlaI	CTCGAG	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SphI	GCATGC	1 cut(s)	448
Sse9I	AATT	1 cut(s)	454
SsiI	CCGC	2 cut(s)	287, 361
SspMI	CTAG	4 cut(s)	66, 408, 438, 469
TaqI	TCGA	2 cut(s)	192, 312
TasI	AATT	1 cut(s)	454
TauI	GCSGC	1 cut(s)	363
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	2 cut(s)	21, 452
Tru9I	TTAA	2 cut(s)	21, 452
TscAI	CASTG	4 cut(s)	15, 77, 214, 402
TseI	GCWGC	8 cut(s)	5, 79, 82, 131, 152, 263, 300, 307
TspDTI	ATGAA	1 cut(s)	137
TspRI	CASTG	4 cut(s)	15, 77, 214, 402
VpaK11BI	GGWCC	2 cut(s)	376, 420
XapI	RAATTY	1 cut(s)	454
XceI	RCATGY	1 cut(s)	448
XhoI	CTCGAG	1 cut(s)	311
XspI	CTAG	4 cut(s)	66, 408, 438, 469
Zsp2I	ATGCAT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.